FvH4_6g45420

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014438
Physical Location & Seq
Forward (+)
34876801 .. 34878768
1968 bp
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UTR
Exon/CDS
Intron
FvH4_6g45420.t1

Sequence Viewer

Length: 420 bp
ATGGAGGCACCCAAGAACATTGAGCACCAAATCGGAGGGATCCAGAACGATACGCTCCGTTTTGGTCTCAACAGCGTCAAGAGCAACCTCGTTGGGGCTCACCCAGTCGAATCTGCTCACCAATCGACGAAGAAGATGCAAGAGGAGATGGATAGGAGAATCTTGACCAACACTTATGGTTCTGCGTTTCCGATGAGGATGGATTTCGAAAGGCAAATGCTTTCTCGATTTCAGAGGCCTACTGGAGCCATACCTTCTTCAATGCTAGGTTTGGAGTCTCTGACAGGAGACTTGGATTCTTTTGGTTTTGAAGACTACATGAATGATCCCCGTGAATCTGAGACTGTCCGGCCATTAGACGCTCATCATGCAATGGAAGTTCGTCTTGGACTTTCCAAGGGTCCAGTTGCCTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

140

Amino Acids

15.65

Weight (kDa)

5.7

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMP1 PF05348 15 - 129 1.1e-34 Proteasome maturation factor UMP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AclWI GGATC 3 cut(s) 34, 47, 320
AcoI YGGCCR 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 2 cut(s) 261, 311
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 4 cut(s) 71, 282, 282, 335
AlwI GGATC 3 cut(s) 34, 47, 320
AoxI GGCC 2 cut(s) 236, 350
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 92, 110
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 401
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 2 cut(s) 142, 193
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcoDI GTCTC 4 cut(s) 71, 282, 282, 335
BfaI CTAG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 4 cut(s) 9, 41, 247, 402
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 396
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 104, 247, 404
Bse3DI GCAATG 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 3 cut(s) 104, 247, 404
BseRI GAGGAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 238, 352
BshNI GGYRCC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 4 cut(s) 71, 282, 282, 335
BsnI GGCC 2 cut(s) 238, 352
Bso31I GGTCTC 1 cut(s) 71
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 27, 100
Bsp143I GATC 2 cut(s) 39, 325
BspANI GGCC 2 cut(s) 238, 352
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 4 cut(s) 9, 41, 247, 402
BspPI GGATC 3 cut(s) 34, 47, 320
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 3 cut(s) 104, 247, 404
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 2 cut(s) 39, 325
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 2 cut(s) 42, 328
BstMAI GTCTC 4 cut(s) 71, 282, 282, 335
BstMBI GATC 2 cut(s) 39, 325
BstMWI GCNNNNNNNGC 2 cut(s) 81, 368
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 2 cut(s) 238, 352
BtsCI GGATG 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 2 cut(s) 64, 368
CviAII CATG 2 cut(s) 319, 368
CviJI RGCY 4 cut(s) 98, 238, 248, 352
CviKI_1 RGCY 4 cut(s) 98, 238, 248, 352
DdeI CTNAG 1 cut(s) 339
DpnI GATC 2 cut(s) 41, 327
DpnII GATC 2 cut(s) 39, 325
EaeI YGGCCR 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 100
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 2 cut(s) 322, 371
FaiI YATR 4 cut(s) 177, 251, 320, 369
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 2 cut(s) 318, 367
FokI GGATG 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 100
FspBI CTAG 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 238, 352
HapII CCGG 1 cut(s) 349
HgaI GACGC 2 cut(s) 64, 368
Hin1II CATG 2 cut(s) 322, 371
HinfI GANTC 5 cut(s) 110, 159, 275, 296, 335
HpaII CCGG 1 cut(s) 349
HphI GGTGA 2 cut(s) 92, 110
Hpy188I TCNGA 5 cut(s) 35, 192, 234, 282, 340
Hpy188III TCNNGA 4 cut(s) 43, 79, 163, 225
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 264
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4V TGCA 2 cut(s) 139, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 368
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 2 cut(s) 322, 371
Kzo9I GATC 2 cut(s) 39, 325
LmnI GCTCC 2 cut(s) 60, 245
LpnPI CCDG 5 cut(s) 56, 117, 228, 270, 362
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 266
MalI GATC 2 cut(s) 41, 327
MboI GATC 2 cut(s) 39, 325
MboII GAAGA 4 cut(s) 142, 145, 249, 323
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 2 cut(s) 27, 100
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 5 cut(s) 29, 98, 136, 189, 228
MspI CCGG 1 cut(s) 349
MwoI GCNNNNNNNGC 2 cut(s) 81, 368
NdeII GATC 2 cut(s) 39, 325
NlaIII CATG 2 cut(s) 322, 371
NlaIV GGNNCC 4 cut(s) 9, 41, 247, 402
NspV TTCGAA 1 cut(s) 207
PceI AGGCCT 1 cut(s) 238
PfeI GAWTC 4 cut(s) 110, 159, 296, 335
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PspN4I GGNNCC 4 cut(s) 9, 41, 247, 402
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 1 cut(s) 39
Sau3AI GATC 2 cut(s) 39, 325
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 2 cut(s) 27, 100
SetI ASST 3 cut(s) 90, 256, 271
SfaNI GCATC 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 401
SseBI AGGCCT 1 cut(s) 238
SspMI CTAG 1 cut(s) 266
StuI AGGCCT 1 cut(s) 238
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 1 cut(s) 346
TaqI TCGA 4 cut(s) 108, 125, 207, 226
TfiI GAWTC 4 cut(s) 110, 159, 296, 335
TspDTI ATGAA 1 cut(s) 335
TspGWI ACGGA 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 401
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.