Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0014438

Physical Location & Seq

Genomic Coordinates Reverse (-)

706994 .. 708841

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00960.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGGCACCGAAGACAATCGAGCACCAAATCGGAGGAATCCAGAACGACGCCCTTCGATTCGGACTTCACGGCGTCAAGAGCGACCTCGTCGGCGCTCACCCTCTCGAATCTGCTTTGGAATCGGAGCAGATAAATAGGAAAATCTTGGGGTACACTTATGGAAGTGCGTTTCCACTGAAGATCGATCTCGAAAGGCAAATCCTTTCTCGATTTCAGAGGCCTGCTGGCCCAATTCCTTCCTCCATGCTGGGTTTGGAGGCAATGACTGGAAAATTGGATGATTTCGGCTTTGAGGATTATCTGAATGACCCCCGTGAATCTGAAACATTCCGGCCTGTGGACACACATCATGCAATGGAAGTTCGCCTTGGGCTGTCAAAGGGTCCAGTCGCCCCAAGCTTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

UMP1

Protein Analysis

137

Amino Acids

15.05

Weight (kDa)

5.48

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67250 AT5G38650
fragaria_vesca	FvH4_6g45420
malus_domestica	MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica	Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis	pycom09g00960 pycom17g07440
rosa_chinensis	RchiOBHm_Chr2g0163251
rosa_roxburghii	Rroxscaffold_2G00087440
rosa_rugosa	Rorug02G0501600
rosa_samantha	Rh2BG580600 Rh2DG590500
rosa_wichuraiana	Rw2G047030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	2 cut(s)	51, 75
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	1 cut(s)	402
AluI	AGCT	1 cut(s)	402
Alw21I	GWGCWC	1 cut(s)	27
AoxI	GGCC	3 cut(s)	221, 229, 335
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	230, 386
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	88
BfoI	RGCGCY	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	230, 386
BmiI	GGNNCC	2 cut(s)	9, 387
BpiI	GAAGAC	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	2 cut(s)	51, 75
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	274, 389
Bse3DI	GCAATG	2 cut(s)	270, 363
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	2 cut(s)	270, 363
BseNI	ACTGG	2 cut(s)	274, 389
BseYI	CCCAGC	1 cut(s)	250
BshFI	GGCC	3 cut(s)	223, 231, 337
BshNI	GGYRCC	1 cut(s)	7
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	340
BsnI	GGCC	3 cut(s)	223, 231, 337
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	183, 187
BspANI	GGCC	3 cut(s)	223, 231, 337
BspDI	ATCGAT	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	9, 387
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	2 cut(s)	270, 363
BsrI	ACTGG	2 cut(s)	274, 389
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	2 cut(s)	183, 187
BssNI	GRCGYC	2 cut(s)	51, 75
BssT1I	CCWWGG	1 cut(s)	370
BstACI	GRCGYC	2 cut(s)	51, 75
BstC8I	GCNNGC	2 cut(s)	225, 229
BstF5I	GGATG	1 cut(s)	286
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	186, 190
BstMBI	GATC	2 cut(s)	183, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstV2I	GAAGAC	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	3 cut(s)	223, 231, 337
BsuTUI	ATCGAT	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	2 cut(s)	225, 229
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	230, 386
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	2 cut(s)	59, 64
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	247, 353
CviJI	RGCY	6 cut(s)	223, 231, 291, 337, 376, 402
CviKI_1	RGCY	6 cut(s)	223, 231, 291, 337, 376, 402
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	2 cut(s)	185, 189
DpnII	GATC	2 cut(s)	183, 187
Eco130I	CCWWGG	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	2 cut(s)	250, 356
FaiI	YATR	4 cut(s)	162, 248, 354, 407
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	2 cut(s)	246, 352
FokI	GGATG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	97
GsaI	CCCAGC	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	223, 231, 337
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	2 cut(s)	59, 64
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	2 cut(s)	51, 75
Hin1II	CATG	2 cut(s)	250, 356
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	5 cut(s)	39, 60, 110, 122, 320
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	156, 343
Hpy188I	TCNGA	6 cut(s)	35, 65, 127, 219, 306, 325
Hpy188III	TCNNGA	5 cut(s)	43, 79, 107, 191, 210
Hpy8I	GTNNAC	2 cut(s)	156, 343
Hpy99I	CGWCG	2 cut(s)	53, 95
HpyAV	CCTTC	2 cut(s)	65, 249
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
Hsp92I	GRCGYC	2 cut(s)	51, 75
Hsp92II	CATG	2 cut(s)	250, 356
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	183, 187
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	8 cut(s)	56, 213, 236, 237, 255, 347, 351, 402
MalI	GATC	2 cut(s)	185, 189
MboI	GATC	2 cut(s)	183, 187
MboII	GAAGA	2 cut(s)	25, 193
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	2 cut(s)	234, 275
MnlI	CCTC	7 cut(s)	29, 98, 114, 213, 253, 253, 289
MspI	CCGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	2 cut(s)	183, 187
NlaIII	CATG	2 cut(s)	250, 356
NlaIV	GGNNCC	2 cut(s)	9, 387
PceI	AGGCCT	1 cut(s)	223
PfeI	GAWTC	5 cut(s)	39, 60, 110, 122, 320
PflFI	GACNNNGTC	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	9, 387
PspPI	GGNCC	2 cut(s)	230, 386
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
Sau3AI	GATC	2 cut(s)	183, 187
Sau96I	GGNCC	2 cut(s)	230, 386
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	2 cut(s)	90, 404
SinI	GGWCC	1 cut(s)	386
Sse9I	AATT	2 cut(s)	234, 275
SseBI	AGGCCT	1 cut(s)	223
StuI	AGGCCT	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	370
TaqI	TCGA	6 cut(s)	21, 58, 108, 186, 192, 211
TasI	AATT	2 cut(s)	234, 275
TfiI	GAWTC	5 cut(s)	39, 60, 110, 122, 320
TscAI	CASTG	1 cut(s)	183
TspRI	CASTG	1 cut(s)	183
Tth111I	GACNNNGTC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.