AT1G68140

BEST Arabidopsis thaliana protein match is Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007434
Physical Location & Seq
Reverse (-)
25538924 .. 25541823
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68140.4

Sequence Viewer

Length: 1005 bp
ATGGCCAAAGCTAGGAAGGCAGGACGTAGGGTTCCTTCACGACGCTTCAGGGCAAGAGCAAAACCATACAAATTTCCATCTTCTAAAAGACTTGTGGCGAGAAACATGTTTGCGGAAGATTGTTCAAAGTGTCTAGAGAAGAGGGATTGGGAGAATGTTATATGTTCGGTTTGCATGGAGTGTCCACACAACGCTGTCCTTCTTCTCTGCTCATCTCATGACAAGGGATGTCGTCCTTACATGTGTGGAACCAGTTTCCGGTATTCTAATTGCTTAGATCAGTACAAGAAAGCGTCAGCTAAGCTGAAGACATCGGGCCATCAACAGATCAATAAGTCTGAGCTTGGAAATCTCACATGCCCACTTTGTAGAGGACAGGTGAAAGGTTGGACAATCGTACAGCCTGCTCGTGACTTTTTGAATCTTAAGAAGAGGATCTGTATGCAGGAGAACTGTGTTTATGCTGGAACCTTCAAAGAGCTGAGGAAACACATGAAAGTGGACCACCCTAGTGCGAAGCCGCGTGAAGTGGATCCTGATGTGGAGCAGAATTGGAGAAGGCTTGAGATCGAGCATGACCGGGACGATGTTATGAGCACGATTAGGTCGACAATGCCTGGTACAGTGGTGTATGGTGATTACGTAATTGAAAGGAACAATGCCAACGGTTCAGATTCAGACGAGGGTGGTGATGATGATGGGATCGATGCTGCATTTGGTAGGAATCTTGTGAATGTTTTCCTTCTGTTACATGCTTTTGGGGCATCAGGTAATCAGATCAGACGCTCTGATTCAGATTCGAATGACTCGACAACAATCAACCGAGGAACAAGTGAGCTGAATTTCTCTGAAGAAGAAGAGGAAGAGGAGGAGGAGGAGAGGCATAGTAACAGTAACTCTTTGGCAAGTCGAATGAGGCGACAAGGACGCGTTCTGCTGGGACGTTCAGGTAGGAGACGTAGAGATAGAGAAGCTAACCAGAACACAGGTCCTCCTCCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

334

Amino Acids

38.04

Weight (kDa)

9.08

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 51 - 199 2.9e-61 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 608
AccII CGCG 2 cut(s) 523, 930
AciI CCGC 2 cut(s) 113, 521
AclWI GGATC 4 cut(s) 443, 527, 540, 710
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 71, 841
AcuI CTGAAG 3 cut(s) 31, 326, 870
AfaI GTAC 3 cut(s) 284, 399, 622
AfiI CCNNNNNNNGG 2 cut(s) 12, 258
AflII CTTAAG 1 cut(s) 425
AflIII ACRYGT 3 cut(s) 105, 240, 928
AgsI TTSAA 4 cut(s) 126, 421, 475, 650
AjnI CCWGG 1 cut(s) 616
AleI CACNNNNGTG 1 cut(s) 510
AloI GAACNNNNNNTCC 2 cut(s) 15, 47
AluBI AGCT 7 cut(s) 11, 299, 304, 343, 481, 838, 974
AluI AGCT 7 cut(s) 11, 299, 304, 343, 481, 838, 974
Alw21I GWGCWC 1 cut(s) 599
Alw26I GTCTC 1 cut(s) 949
AlwI GGATC 4 cut(s) 443, 527, 540, 710
AoxI GGCC 2 cut(s) 3, 316
ApeKI GCWGC 1 cut(s) 710
ApoI RAATTY 2 cut(s) 71, 841
Asp700I GAANNNNTTC 1 cut(s) 737
AspS9I GGNCC 3 cut(s) 316, 502, 989
AsuC2I CCSGG 1 cut(s) 581
AsuHPI GGTGA 3 cut(s) 391, 647, 701
AsuII TTCGAA 1 cut(s) 800
AvaII GGWCC 2 cut(s) 502, 989
BaeI ACNNNNGTAYC 2 cut(s) 612, 645
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 532
BarI GAAGNNNNNNTAC 2 cut(s) 19, 51
BauI CACGAG 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 599
BbvCI CCTCAGC 1 cut(s) 482
BbvI GCAGC 1 cut(s) 697
BccI CCATC 3 cut(s) 85, 327, 692
BciT130I CCWGG 1 cut(s) 618
BcnI CCSGG 1 cut(s) 581
BcoDI GTCTC 1 cut(s) 949
BfaI CTAG 4 cut(s) 12, 134, 510, 999
BfrI CTTAAG 1 cut(s) 425
BisI GCNGC 2 cut(s) 521, 711
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 2 cut(s) 522, 712
Bme1390I CCNGG 2 cut(s) 581, 618
Bme18I GGWCC 2 cut(s) 502, 989
BmgT120I GGNCC 3 cut(s) 316, 502, 989
BmiI GGNNCC 4 cut(s) 33, 250, 469, 534
BmrFI CCNGG 2 cut(s) 581, 618
BmsI GCATC 2 cut(s) 697, 773
BpiI GAAGAC 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 482
Bpu1102I GCTNAGC 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 800
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 581
Bsa29I ATCGAT 1 cut(s) 705
BsaAI YACGTR 1 cut(s) 643
BsaJI CCNNGG 1 cut(s) 823
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 1 cut(s) 976
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 258
Bse1I ACTGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 618
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 1 cut(s) 823
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 12, 258
BseMII CTCAG 2 cut(s) 330, 473
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 5 cut(s) 881, 884, 887, 890, 984
BseXI GCAGC 1 cut(s) 697
BseYI CCCAGC 1 cut(s) 937
Bsh1236I CGCG 2 cut(s) 523, 930
BshFI GGCC 2 cut(s) 5, 318
BshVI ATCGAT 1 cut(s) 705
BsiHKAI GWGCWC 1 cut(s) 599
BsiSI CCGG 2 cut(s) 259, 580
BslFI GGGAC 2 cut(s) 596, 954
BslI CCNNNNNNNGG 2 cut(s) 12, 258
BsmAI GTCTC 1 cut(s) 949
BsmBI CGTCTC 1 cut(s) 949
BsmFI GGGAC 2 cut(s) 596, 954
BsnI GGCC 2 cut(s) 5, 318
Bsp119I TTCGAA 1 cut(s) 800
Bsp1286I GDGCHC 1 cut(s) 599
Bsp143I GATC 7 cut(s) 277, 327, 435, 532, 567, 702, 777
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 2 cut(s) 113, 521
BspANI GGCC 2 cut(s) 5, 318
BspCNI CTCAG 2 cut(s) 331, 474
BspDI ATCGAT 1 cut(s) 705
BspFNI CGCG 2 cut(s) 523, 930
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 4 cut(s) 33, 250, 469, 534
BspPI GGATC 4 cut(s) 443, 527, 540, 710
BspT104I TTCGAA 1 cut(s) 800
BspTI CTTAAG 1 cut(s) 425
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 823
BssMI GATC 7 cut(s) 277, 327, 435, 532, 567, 702, 777
BssSI CACGAG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 4 cut(s) 455, 625, 668, 893
Bst6I CTCTTC 4 cut(s) 134, 425, 852, 858
BstAFI CTTAAG 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 800
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 4 cut(s) 274, 300, 339, 482
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 2 cut(s) 523, 930
BstKTI GATC 7 cut(s) 280, 330, 438, 535, 570, 705, 780
BstMAI GTCTC 1 cut(s) 949
BstMBI GATC 7 cut(s) 277, 327, 435, 532, 567, 702, 777
BstMWI GCNNNNNNNGC 2 cut(s) 17, 761
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 4 cut(s) 109, 244, 360, 755
BstSCI CCNGG 2 cut(s) 579, 616
BstSNI TACGTA 1 cut(s) 643
BstUI CGCG 2 cut(s) 523, 930
BstV1I GCAGC 1 cut(s) 697
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 2 cut(s) 435, 532
BstYI RGATCY 2 cut(s) 435, 532
Bsu15I ATCGAT 1 cut(s) 705
BsuRI GGCC 2 cut(s) 5, 318
BsuTUI ATCGAT 1 cut(s) 705
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 1 cut(s) 405
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 3 cut(s) 316, 502, 989
ClaI ATCGAT 1 cut(s) 705
CseI GACGC 4 cut(s) 51, 282, 792, 936
Csp6I GTAC 3 cut(s) 283, 398, 621
CviAII CATG 8 cut(s) 106, 175, 218, 241, 357, 493, 575, 752
CviQI GTAC 3 cut(s) 283, 398, 621
DdeI CTNAG 4 cut(s) 274, 300, 339, 482
DpnI GATC 7 cut(s) 279, 329, 437, 534, 569, 704, 779
DpnII GATC 7 cut(s) 277, 327, 435, 532, 567, 702, 777
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 134, 425, 852, 858
EarI CTCTTC 4 cut(s) 134, 425, 852, 858
Eco105I TACGTA 1 cut(s) 643
Eco47I GGWCC 2 cut(s) 502, 989
Eco57I CTGAAG 3 cut(s) 31, 326, 870
EcoO109I RGGNCCY 1 cut(s) 989
EcoRII CCWGG 1 cut(s) 616
Esp3I CGTCTC 1 cut(s) 949
FaeI CATG 8 cut(s) 109, 178, 221, 244, 360, 496, 578, 755
FaqI GGGAC 2 cut(s) 596, 954
FatI CATG 8 cut(s) 105, 174, 217, 240, 356, 492, 574, 751
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 2 cut(s) 521, 711
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 2 cut(s) 521, 711
FspBI CTAG 4 cut(s) 12, 134, 510, 999
GluI GCNGC 2 cut(s) 521, 711
GsaI CCCAGC 1 cut(s) 941
HaeIII GGCC 2 cut(s) 5, 318
HapII CCGG 2 cut(s) 259, 580
HgaI GACGC 4 cut(s) 51, 282, 792, 936
Hin1II CATG 8 cut(s) 109, 178, 221, 244, 360, 496, 578, 755
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HinfI GANTC 6 cut(s) 421, 674, 724, 791, 797, 806
HpaII CCGG 2 cut(s) 259, 580
HphI GGTGA 3 cut(s) 391, 647, 701
Hpy166II GTNNAC 3 cut(s) 185, 502, 609
Hpy188I TCNGA 8 cut(s) 340, 673, 679, 777, 782, 790, 796, 850
Hpy188III TCNNGA 5 cut(s) 39, 134, 218, 410, 536
Hpy8I GTNNAC 3 cut(s) 185, 502, 609
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 6 cut(s) 10, 45, 209, 481, 552, 752
HpyCH4III ACNGT 4 cut(s) 455, 625, 668, 893
HpyCH4IV ACGT 4 cut(s) 25, 642, 943, 958
HpyCH4V TGCA 3 cut(s) 174, 445, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 761
HpyF3I CTNAG 4 cut(s) 274, 300, 339, 482
HpySE526I ACGT 4 cut(s) 25, 642, 943, 958
Hsp92II CATG 8 cut(s) 109, 178, 221, 244, 360, 496, 578, 755
Kzo9I GATC 7 cut(s) 277, 327, 435, 532, 567, 702, 777
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 2 cut(s) 697, 773
MaeI CTAG 4 cut(s) 12, 134, 510, 999
MaeII ACGT 4 cut(s) 25, 642, 943, 958
MaeIII GTNAC 4 cut(s) 410, 747, 887, 893
MalI GATC 7 cut(s) 279, 329, 437, 534, 569, 704, 779
MboI GATC 7 cut(s) 277, 327, 435, 532, 567, 702, 777
MflI RGATCY 2 cut(s) 435, 532
MhlI GDGCHC 1 cut(s) 599
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 71, 268, 550, 645, 841
MluI ACGCGT 1 cut(s) 928
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 1 cut(s) 368
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 737
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 2 cut(s) 497, 510
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 2 cut(s) 259, 580
MspR9I CCNGG 2 cut(s) 581, 618
MvaI CCWGG 1 cut(s) 618
MvnI CGCG 2 cut(s) 523, 930
MwoI GCNNNNNNNGC 2 cut(s) 17, 761
NciI CCSGG 1 cut(s) 581
NdeII GATC 7 cut(s) 277, 327, 435, 532, 567, 702, 777
NlaIII CATG 8 cut(s) 109, 178, 221, 244, 360, 496, 578, 755
NlaIV GGNNCC 4 cut(s) 33, 250, 469, 534
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 4 cut(s) 109, 244, 360, 755
NspV TTCGAA 1 cut(s) 800
OliI CACNNNNGTG 1 cut(s) 510
PagI TCATGA 1 cut(s) 217
PciI ACATGT 2 cut(s) 105, 240
PcsI WCGNNNNNNNCGW 3 cut(s) 605, 806, 916
PdmI GAANNNNTTC 1 cut(s) 737
PfeI GAWTC 5 cut(s) 421, 674, 724, 791, 797
PkrI GCNGC 2 cut(s) 522, 712
PleI GAGTC 1 cut(s) 800
PpsI GAGTC 1 cut(s) 800
Ppu21I YACGTR 1 cut(s) 643
PpuMI RGGWCCY 1 cut(s) 989
PscI ACATGT 2 cut(s) 105, 240
Psp5II RGGWCCY 1 cut(s) 989
Psp6I CCWGG 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 937
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 4 cut(s) 33, 250, 469, 534
PspPI GGNCC 3 cut(s) 316, 502, 989
PspPPI RGGWCCY 1 cut(s) 989
PsuI RGATCY 2 cut(s) 435, 532
RsaI GTAC 3 cut(s) 284, 399, 622
RsaNI GTAC 3 cut(s) 283, 398, 621
RseI CAYNNNNRTG 2 cut(s) 497, 510
SalI GTCGAC 1 cut(s) 607
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 2 cut(s) 521, 711
Sau3AI GATC 7 cut(s) 277, 327, 435, 532, 567, 702, 777
Sau96I GGNCC 3 cut(s) 316, 502, 989
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 2 cut(s) 581, 618
SduI GDGCHC 1 cut(s) 599
SfaNI GCATC 2 cut(s) 697, 773
SfuI TTCGAA 1 cut(s) 800
SinI GGWCC 2 cut(s) 502, 989
SmiMI CAYNNNNRTG 2 cut(s) 497, 510
SmlI CTYRAG 2 cut(s) 425, 563
SmoI CTYRAG 2 cut(s) 425, 563
SnaBI TACGTA 1 cut(s) 643
Sse9I AATT 5 cut(s) 71, 268, 550, 645, 841
SsiI CCGC 2 cut(s) 113, 521
SspMI CTAG 4 cut(s) 12, 134, 510, 999
StyD4I CCNGG 2 cut(s) 579, 616
TaaI ACNGT 4 cut(s) 455, 625, 668, 893
TaiI ACGT 4 cut(s) 28, 645, 946, 961
TaqI TCGA 6 cut(s) 570, 608, 705, 800, 809, 910
TasI AATT 5 cut(s) 71, 268, 550, 645, 841
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 523
TfiI GAWTC 5 cut(s) 421, 674, 724, 791, 797
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 630
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 1 cut(s) 710
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 1 cut(s) 509
TspRI CASTG 1 cut(s) 630
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 2 cut(s) 502, 989
XapI RAATTY 2 cut(s) 71, 841
XbaI TCTAGA 1 cut(s) 133
XceI RCATGY 4 cut(s) 109, 244, 360, 755
XmiI GTMKAC 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 737
XspI CTAG 4 cut(s) 12, 134, 510, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.