RchiOBHm_Chr7g0223751

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007434
Physical Location & Seq
Forward (+)
45613585 .. 45618410
4826 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20034

Sequence Viewer

Length: 1062 bp
ATGGCAAAAGGTAGCAGGGGACGACGCAGGATTGCTTCTCGACAATACAGGTCAGCTCCATACCCATTGAGCTCTAATGAAGATATCTTTGAGGATCTGTGCCCTAAGAAATGCTCCAAAAACTTGGAGAAAAAGGACTGGGAGGATGCAACATGTTCTGTGTGCATGGAATACCCTCACAATGCCGTTCTTCTCCTATGTTCCTCGCATGACAAAGGTTGTCGTCCTTACATGTGTGGGACTAGTTTTCGACATTCCAACTGTCTTGACCAGTACAAGAAAGCTTACACGAAAATAGTGTCATGTGATCATGGACAATCATTGCATGGCTCTGCCACTAATCCAATTGTGGTACCAGATTCTGGATTGCCAGTTGAGAAGTGTGAAATCACAGAGCTTGCATGCCCCCTCTGTAGGGGCCAGGTGAAAGGCTGGACTGTTCTTGAACCAGCACGAGAATATCTGGATGCAAAACAGAGAAGCTGCATGCAAGAAAACTGCTCATTTGTTGGAAATTACAAGGAGCTTAGGAAGCATGTTAAGGCAGAGCACCCGTCAGCCCGGCCACGGGAAGTGGATCCTGTAGTTGAACAGAAATGGAGAAGCCTTGAACGTGAGAGGGAACAGGATGATGTGATTAGCACAATACAGTCGTCCATGCCAGGAGCAATGTTTTTCGGAGATTATGTAATAGAAGGAAATAATTATGGATTTGATTCGGACGAAGAGGATGGTGGTTTTGATGCAGATGCTGCAGGAAGGAATGCAGGGTTCGGGTTGGGTTTGGATGTGGTTCTTCTTTGGCATGCATTTGGGTCCAACAGACGGATGAGGCAGCATGAGAGGGCATTCCACCAGGCATCAGAGGGTAGTGTTGCCATCCGGCACACGACTCCTATTGGTGGTTTGGATTCCTCTGACCAAGATGACGACAATGACAGTAACGGTGATGATGATGGCGGCATGTCATTGGTGAGCCGGCTCCGGCGTCATGGCAGGGTCTTGCTGGGACGCTCCGGGAGGAGACGTAGACGTAGAGAAGCAAATAGTGAGGAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

353

Amino Acids

39.68

Weight (kDa)

6.47

Isoelectric Point (pI)

65.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 48 - 214 4.8e-71 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 352
AccB1I GGYRCC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 362
AccI GTMKAC 1 cut(s) 1030
AciI CCGC 1 cut(s) 960
AclWI GGATC 3 cut(s) 102, 572, 585
AcoI YGGCCR 1 cut(s) 563
AcyI GRCGYC 1 cut(s) 988
AfaI GTAC 2 cut(s) 275, 354
AfiI CCNNNNNNNGG 7 cut(s) 362, 414, 415, 567, 568, 825, 902
AflIII ACRYGT 2 cut(s) 152, 231
AgsI TTSAA 3 cut(s) 446, 590, 611
AhlI ACTAGT 1 cut(s) 242
AjnI CCWGG 3 cut(s) 420, 661, 855
AluBI AGCT 6 cut(s) 56, 72, 284, 397, 483, 526
AluI AGCT 6 cut(s) 56, 72, 284, 397, 483, 526
Alw21I GWGCWC 2 cut(s) 74, 552
Alw26I GTCTC 1 cut(s) 1018
AlwI GGATC 3 cut(s) 102, 572, 585
AlwNI CAGNNNCTG 2 cut(s) 362, 752
AoxI GGCC 2 cut(s) 418, 563
ApeKI GCWGC 3 cut(s) 483, 752, 835
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp718I GGTACC 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 418, 816
AsuC2I CCSGG 2 cut(s) 562, 1018
AsuHPI GGTGA 3 cut(s) 436, 959, 985
AvaII GGWCC 1 cut(s) 816
BaeGI GKGCMC 1 cut(s) 104
BamHI GGATCC 1 cut(s) 577
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 74
BauI CACGAG 1 cut(s) 453
Bbv12I GWGCWC 2 cut(s) 74, 552
BbvI GCAGC 3 cut(s) 470, 739, 847
BccI CCATC 3 cut(s) 725, 887, 950
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 3 cut(s) 422, 663, 857
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 2 cut(s) 562, 1018
BcoDI GTCTC 1 cut(s) 1018
BcuI ACTAGT 1 cut(s) 242
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 3 cut(s) 412, 582, 753
BisI GCNGC 4 cut(s) 484, 753, 836, 961
BlsI GCNGC 4 cut(s) 485, 754, 837, 962
Bme1390I CCNGG 5 cut(s) 422, 562, 663, 857, 1018
Bme18I GGWCC 1 cut(s) 816
BmgT120I GGNCC 2 cut(s) 418, 816
BmiI GGNNCC 5 cut(s) 354, 419, 579, 817, 983
BmrFI CCNGG 5 cut(s) 422, 562, 663, 857, 1018
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 5 cut(s) 136, 457, 733, 739, 869
BmuI ACTGGG 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 527
BpuMI CCSGG 2 cut(s) 562, 1018
BsaHI GRCGYC 1 cut(s) 988
BsaJI CCNNGG 1 cut(s) 566
BsaXI ACNNNNNCTCC 4 cut(s) 672, 702, 1012, 1042
Bsc4I CCNNNNNNNGG 7 cut(s) 362, 414, 415, 567, 568, 825, 902
Bse118I RCCGGY 1 cut(s) 978
Bse1I ACTGG 3 cut(s) 143, 271, 371
Bse3DI GCAATG 2 cut(s) 320, 675
BseBI CCWGG 3 cut(s) 422, 663, 857
BseDI CCNNGG 1 cut(s) 566
BseGI GGATG 7 cut(s) 151, 472, 634, 736, 793, 834, 879
BseLI CCNNNNNNNGG 7 cut(s) 362, 414, 415, 567, 568, 825, 902
BseMI GCAATG 2 cut(s) 320, 675
BseNI ACTGG 3 cut(s) 143, 271, 371
BseRI GAGGAG 1 cut(s) 1036
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 3 cut(s) 470, 739, 847
BseYI CCCAGC 1 cut(s) 1006
BshFI GGCC 2 cut(s) 420, 565
BshNI GGYRCC 1 cut(s) 352
BsiHKAI GWGCWC 2 cut(s) 74, 552
BsiSI CCGG 5 cut(s) 562, 883, 979, 985, 1017
BslFI GGGAC 3 cut(s) 33, 253, 1023
BslI CCNNNNNNNGG 7 cut(s) 362, 414, 415, 567, 568, 825, 902
BsmAI GTCTC 1 cut(s) 1018
BsmBI CGTCTC 1 cut(s) 1018
BsmFI GGGAC 3 cut(s) 33, 253, 1023
BsmI GAATGC 2 cut(s) 769, 848
BsnI GGCC 2 cut(s) 420, 565
Bsp1286I GDGCHC 3 cut(s) 74, 104, 552
Bsp143I GATC 3 cut(s) 94, 307, 577
BspACI CCGC 1 cut(s) 960
BspANI GGCC 2 cut(s) 420, 565
BspLI GGNNCC 5 cut(s) 354, 419, 579, 817, 983
BspMAI CTGCAG 1 cut(s) 757
BspPI GGATC 3 cut(s) 102, 572, 585
BspT107I GGYRCC 1 cut(s) 352
BsrDI GCAATG 2 cut(s) 320, 675
BsrFI RCCGGY 1 cut(s) 978
BsrI ACTGG 3 cut(s) 143, 271, 371
BssAI RCCGGY 1 cut(s) 978
BssECI CCNNGG 1 cut(s) 566
BssMI GATC 3 cut(s) 94, 307, 577
BssNI GRCGYC 1 cut(s) 988
BssSI CACGAG 1 cut(s) 453
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 3 cut(s) 422, 663, 857
Bst4CI ACNGT 5 cut(s) 263, 439, 651, 941, 947
Bst6I CTCTTC 1 cut(s) 720
BstACI GRCGYC 1 cut(s) 988
BstAPI GCANNNNNTGC 1 cut(s) 752
BstC8I GCNNGC 5 cut(s) 399, 403, 488, 807, 980
BstDEI CTNAG 2 cut(s) 105, 527
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 7 cut(s) 151, 472, 634, 736, 793, 834, 879
BstKTI GATC 3 cut(s) 97, 310, 580
BstMAI GTCTC 1 cut(s) 1018
BstMBI GATC 3 cut(s) 94, 307, 577
BstMWI GCNNNNNNNGC 2 cut(s) 532, 752
BstNI CCWGG 3 cut(s) 422, 663, 857
BstNSI RCATGY 7 cut(s) 156, 235, 405, 490, 539, 809, 967
BstSCI CCNGG 5 cut(s) 420, 560, 661, 855, 1016
BstSFI CTRYAG 3 cut(s) 412, 582, 753
BstSLI GKGCMC 1 cut(s) 104
BstV1I GCAGC 3 cut(s) 470, 739, 847
BstX2I RGATCY 2 cut(s) 94, 577
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 2 cut(s) 94, 577
BsuRI GGCC 2 cut(s) 420, 565
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 7 cut(s) 151, 472, 634, 736, 793, 834, 879
Cac8I GCNNGC 5 cut(s) 399, 403, 488, 807, 980
CaiI CAGNNNCTG 2 cut(s) 362, 752
Cfr10I RCCGGY 1 cut(s) 978
Cfr13I GGNCC 2 cut(s) 418, 816
CseI GACGC 3 cut(s) 33, 977, 1020
Csp6I GTAC 2 cut(s) 274, 353
CviQI GTAC 2 cut(s) 274, 353
DdeI CTNAG 2 cut(s) 105, 527
DpnI GATC 3 cut(s) 96, 309, 579
DpnII GATC 3 cut(s) 94, 307, 577
EaeI YGGCCR 1 cut(s) 563
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
Ecl136II GAGCTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 74
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 816
Eco53kI GAGCTC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 72
EcoRII CCWGG 3 cut(s) 420, 661, 855
EcoRV GATATC 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 811
EcoT38I GRGCYC 1 cut(s) 74
Esp3I CGTCTC 1 cut(s) 1018
FaqI GGGAC 3 cut(s) 33, 253, 1023
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 1030
Fnu4HI GCNGC 4 cut(s) 484, 753, 836, 961
FokI GGATG 7 cut(s) 158, 479, 641, 743, 800, 841, 866
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 4 cut(s) 484, 753, 836, 961
FspBI CTAG 1 cut(s) 243
GluI GCNGC 4 cut(s) 484, 753, 836, 961
GsaI CCCAGC 1 cut(s) 1010
HaeIII GGCC 2 cut(s) 420, 565
HapII CCGG 5 cut(s) 562, 883, 979, 985, 1017
HgaI GACGC 3 cut(s) 33, 977, 1020
Hin1I GRCGYC 1 cut(s) 988
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 4 cut(s) 359, 716, 892, 911
HpaII CCGG 5 cut(s) 562, 883, 979, 985, 1017
HphI GGTGA 3 cut(s) 436, 959, 985
Hpy166II GTNNAC 1 cut(s) 1031
Hpy188I TCNGA 4 cut(s) 680, 721, 865, 919
Hpy188III TCNNGA 5 cut(s) 39, 266, 363, 443, 464
Hpy8I GTNNAC 1 cut(s) 1031
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 689, 753
HpyCH4III ACNGT 5 cut(s) 263, 439, 651, 941, 947
HpyCH4IV ACGT 3 cut(s) 613, 1027, 1033
HpyF10VI GCNNNNNNNGC 2 cut(s) 532, 752
HpyF3I CTNAG 2 cut(s) 105, 527
HpySE526I ACGT 3 cut(s) 613, 1027, 1033
Hsp92I GRCGYC 1 cut(s) 988
KpnI GGTACC 1 cut(s) 356
KroI GCCGGC 1 cut(s) 978
KroNI GCCGGC 1 cut(s) 980
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 94, 307, 577
LmnI GCTCC 6 cut(s) 61, 119, 523, 665, 987, 1019
Lsp1109I GCAGC 3 cut(s) 470, 739, 847
LweI GCATC 5 cut(s) 136, 457, 733, 739, 869
MaeI CTAG 1 cut(s) 243
MaeII ACGT 3 cut(s) 613, 1027, 1033
MaeIII GTNAC 1 cut(s) 941
MalI GATC 3 cut(s) 96, 309, 579
MboI GATC 3 cut(s) 94, 307, 577
MboII GAAGA 4 cut(s) 92, 182, 737, 788
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 2 cut(s) 94, 577
MhlI GDGCHC 3 cut(s) 74, 104, 552
MluCI AATT 3 cut(s) 345, 514, 703
MlyI GAGTC 1 cut(s) 886
MmeI TCCRAC 3 cut(s) 282, 490, 843
Mph1103I ATGCAT 1 cut(s) 811
MroNI GCCGGC 1 cut(s) 978
MseI TTAA 1 cut(s) 540
MspI CCGG 5 cut(s) 562, 883, 979, 985, 1017
MspR9I CCNGG 5 cut(s) 422, 562, 663, 857, 1018
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 2 cut(s) 769, 848
MvaI CCWGG 3 cut(s) 422, 663, 857
MwoI GCNNNNNNNGC 2 cut(s) 532, 752
NaeI GCCGGC 1 cut(s) 980
NciI CCSGG 2 cut(s) 562, 1018
NdeII GATC 3 cut(s) 94, 307, 577
NgoMIV GCCGGC 1 cut(s) 978
NlaIV GGNNCC 5 cut(s) 354, 419, 579, 817, 983
NsiI ATGCAT 1 cut(s) 811
NspI RCATGY 7 cut(s) 156, 235, 405, 490, 539, 809, 967
PaeI GCATGC 3 cut(s) 405, 490, 809
PciI ACATGT 2 cut(s) 152, 231
PctI GAATGC 2 cut(s) 769, 848
PdiI GCCGGC 1 cut(s) 980
PfeI GAWTC 3 cut(s) 359, 716, 911
PflMI CCANNNNNTGG 1 cut(s) 362
PfoI TCCNGGA 1 cut(s) 1016
PkrI GCNGC 4 cut(s) 485, 754, 837, 962
PleI GAGTC 1 cut(s) 886
PpsI GAGTC 1 cut(s) 886
PscI ACATGT 2 cut(s) 152, 231
Psp124BI GAGCTC 1 cut(s) 74
Psp6I CCWGG 3 cut(s) 420, 661, 855
PspFI CCCAGC 1 cut(s) 1006
PspGI CCWGG 3 cut(s) 420, 661, 855
PspN4I GGNNCC 5 cut(s) 354, 419, 579, 817, 983
PspPI GGNCC 2 cut(s) 418, 816
PstI CTGCAG 1 cut(s) 757
PstNI CAGNNNCTG 2 cut(s) 362, 752
PsuI RGATCY 2 cut(s) 94, 577
RsaI GTAC 2 cut(s) 275, 354
RsaNI GTAC 2 cut(s) 274, 353
SacI GAGCTC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 4 cut(s) 484, 753, 836, 961
Sau3AI GATC 3 cut(s) 94, 307, 577
Sau96I GGNCC 2 cut(s) 418, 816
SchI GAGTC 1 cut(s) 886
ScrFI CCNGG 5 cut(s) 422, 562, 663, 857, 1018
SduI GDGCHC 3 cut(s) 74, 104, 552
SfaNI GCATC 5 cut(s) 136, 457, 733, 739, 869
SfcI CTRYAG 3 cut(s) 412, 582, 753
SinI GGWCC 1 cut(s) 816
SpeI ACTAGT 1 cut(s) 242
SphI GCATGC 3 cut(s) 405, 490, 809
Sse9I AATT 3 cut(s) 345, 514, 703
SsiI CCGC 1 cut(s) 960
SspMI CTAG 1 cut(s) 243
SstI GAGCTC 1 cut(s) 74
StyD4I CCNGG 5 cut(s) 420, 560, 661, 855, 1016
TaaI ACNGT 5 cut(s) 263, 439, 651, 941, 947
TaiI ACGT 3 cut(s) 616, 1030, 1036
TaqI TCGA 2 cut(s) 40, 250
TasI AATT 3 cut(s) 345, 514, 703
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 963
TfiI GAWTC 3 cut(s) 359, 716, 911
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TseI GCWGC 3 cut(s) 483, 752, 835
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 1 cut(s) 841
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 816
XceI RCATGY 7 cut(s) 156, 235, 405, 490, 539, 809, 967
XmiI GTMKAC 1 cut(s) 1030
XspI CTAG 1 cut(s) 243
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.