Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8070298.1

Orthogroup ID

OG0007434

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 576

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8070298.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 502 bp

gtcagctccatacccattgagctctaatgaggatatctttgaggatctgtgccctaagaaatgctccaaaaacttggagaaaaaggactgggaggatgcaacatgttctgtgtgcatggaataccctcacaatgccgttcttctcctatgttcctctcatgacaaaggttgtcgtccttacatgtgtgggactagttttcgacattccaactgtcttgaccagtacaagaaagcttacacaaaaatagtgtcatgtgatcatggacaatcattgcatggctctgccactaatccaattgtggtaccagattctggattgccagttgagaagtgtgaaatcacagagcttgcatgccccctctgtaggggccaggtgaaaggctggactgttcttgaaccagcacgagaatatctggatgcaaaacagagaagctgcatgcaagaaaactgctcatttgttggaaattacaaggagcttaggaagcatgttaaggcagagcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

167

Amino Acids

18.79

Weight (kDa)

6.63

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68140 AT1G68140 AT1G68140 AT1G68140
fragaria_vesca	FvH4_5g29920 FvH4_5g29920
malus_domestica	MD08G1226800.v1.1 MD15G1419100.v1.1
prunus_persica	Prupe.1G563900_v2.0.a1
pyrus_communis	pycom08g19780 pycom15g37200
rosa_chinensis	RchiOBHm_Chr7g0223751
rosa_laevigata	RLG00000001952
rosa_multiflora	Rmu_co8070298.1_g000001 Rmu_sc0008835.1_g000021
rosa_roxburghii	Rroxscaffold_3G00235400
rosa_rugosa	Rorug07G0219300 Rorug07G0219400 Rorug07G0219500 Rorug07G0219600
rosa_samantha	Rh7AG362200 Rh7BG353600 Rh7CG380800 Rh7DG357500
rosa_wichuraiana	Rw7G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	312
AclWI	GGATC	1 cut(s)	52
AfaI	GTAC	2 cut(s)	225, 304
AfiI	CCNNNNNNNGG	3 cut(s)	312, 364, 365
AflIII	ACRYGT	2 cut(s)	102, 181
AgsI	TTSAA	1 cut(s)	396
AhlI	ACTAGT	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	6 cut(s)	6, 22, 234, 347, 433, 476
AluI	AGCT	6 cut(s)	6, 22, 234, 347, 433, 476
Alw21I	GWGCWC	2 cut(s)	24, 502
AlwI	GGATC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	312
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	433
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
Asp718I	GGTACC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	403
Bbv12I	GWGCWC	2 cut(s)	24, 502
BbvI	GCAGC	1 cut(s)	420
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	1 cut(s)	257
BcuI	ACTAGT	1 cut(s)	192
BfaI	CTAG	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	362
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
Bme1390I	CCNGG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	2 cut(s)	304, 369
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	86, 407
BmuI	ACTGGG	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 364, 365
Bse1I	ACTGG	3 cut(s)	93, 221, 321
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	101, 422
BseLI	CCNNNNNNNGG	3 cut(s)	312, 364, 365
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	3 cut(s)	93, 221, 321
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	420
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	302
BsiHKAI	GWGCWC	2 cut(s)	24, 502
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	3 cut(s)	312, 364, 365
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	370
Bsp1286I	GDGCHC	3 cut(s)	24, 54, 502
Bsp143I	GATC	2 cut(s)	44, 257
BspANI	GGCC	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	304, 369
BspPI	GGATC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	93, 221, 321
BssMI	GATC	2 cut(s)	44, 257
BssSI	CACGAG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	213, 389
BstC8I	GCNNGC	3 cut(s)	349, 353, 438
BstDEI	CTNAG	2 cut(s)	55, 477
BstF5I	GGATG	2 cut(s)	101, 422
BstKTI	GATC	2 cut(s)	47, 260
BstMBI	GATC	2 cut(s)	44, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	5 cut(s)	106, 185, 355, 440, 489
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	101, 422
Cac8I	GCNNGC	3 cut(s)	349, 353, 438
CaiI	CAGNNNCTG	1 cut(s)	312
CciI	TCATGA	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	224, 303
CviJI	RGCY	9 cut(s)	6, 22, 234, 280, 347, 370, 382, 433, 476
CviKI_1	RGCY	9 cut(s)	6, 22, 234, 280, 347, 370, 382, 433, 476
CviQI	GTAC	2 cut(s)	224, 303
DdeI	CTNAG	2 cut(s)	55, 477
DpnI	GATC	2 cut(s)	46, 259
DpnII	GATC	2 cut(s)	44, 257
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	24
FaqI	GGGAC	1 cut(s)	203
FbaI	TGATCA	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	2 cut(s)	108, 429
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	1 cut(s)	193
GluI	GCNGC	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	1 cut(s)	309
HphI	GGTGA	1 cut(s)	386
Hpy188III	TCNNGA	5 cut(s)	159, 216, 313, 393, 414
HpyCH4III	ACNGT	2 cut(s)	213, 389
HpyCH4V	TGCA	7 cut(s)	99, 115, 275, 351, 420, 436, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	2 cut(s)	55, 477
KpnI	GGTACC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	44, 257
LmnI	GCTCC	3 cut(s)	11, 69, 473
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	2 cut(s)	86, 407
MaeI	CTAG	1 cut(s)	193
MalI	GATC	2 cut(s)	46, 259
MboI	GATC	2 cut(s)	44, 257
MboII	GAAGA	1 cut(s)	132
MfeI	CAATTG	1 cut(s)	295
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	3 cut(s)	24, 54, 502
MluCI	AATT	2 cut(s)	295, 464
MmeI	TCCRAC	2 cut(s)	232, 440
MnlI	CCTC	6 cut(s)	23, 35, 86, 136, 164, 369
MseI	TTAA	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	372
MunI	CAATTG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	2 cut(s)	44, 257
NlaIV	GGNNCC	2 cut(s)	304, 369
NspI	RCATGY	5 cut(s)	106, 185, 355, 440, 489
PaeI	GCATGC	2 cut(s)	355, 440
PagI	TCATGA	1 cut(s)	158
PciI	ACATGT	2 cut(s)	102, 181
PfeI	GAWTC	1 cut(s)	309
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	435
PscI	ACATGT	2 cut(s)	102, 181
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	304, 369
PspPI	GGNCC	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	2 cut(s)	225, 304
RsaNI	GTAC	2 cut(s)	224, 303
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	2 cut(s)	44, 257
Sau96I	GGNCC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	3 cut(s)	24, 54, 502
SetI	ASST	8 cut(s)	8, 24, 170, 236, 349, 376, 435, 478
SfaNI	GCATC	2 cut(s)	86, 407
SfcI	CTRYAG	1 cut(s)	362
SpeI	ACTAGT	1 cut(s)	192
SphI	GCATGC	2 cut(s)	355, 440
Sse9I	AATT	2 cut(s)	295, 464
SspMI	CTAG	1 cut(s)	193
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	213, 389
TaqI	TCGA	1 cut(s)	200
TasI	AATT	2 cut(s)	295, 464
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TseI	GCWGC	1 cut(s)	433
Van91I	CCANNNNNTGG	1 cut(s)	312
XceI	RCATGY	5 cut(s)	106, 185, 355, 440, 489
XspI	CTAG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.