Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007434

Physical Location & Seq

Genomic Coordinates Reverse (-)

46052573 .. 46057496

Gene Structure 4924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G563900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCAAAAGGTAGCAGGGGACGACGCAGGATTGCTTCCCGAAGATACAGACCAACGCCATACCCATTGCGCTCTAATCAAGATATATTGGAGGATCTGTGCCCGAAGAAATGCTCCAGAGATTTGGAGAAAAAAGACTGGGATGATGCAACATGTTCTGTGTGCATGGAGTATCCTCACAATGCCGTTCTTCTCCTATGTTCCTCTCATGACAAGGGTTGCCGACCCTACATGTGTGGAACTAGTTTCCGGCATTCCAACTGTCTTGGCCAGTACAAGAAAGCTTATACCAAAATGGTGTCATCTGATCATGGACAACCATTGCTTGGTTCCGATAACAATCCAATTGTGCTACCAGATTCTGAATGGCCAGCACAGAAGTGTGAAGTCTCAGAGCTTGCATGCCCCCTCTGTAGGGGAAAGGTGAAGGGCTGGACTGTTCTTGAACCAGCACGAGATTATCTAAATGCAAAAAAGAGAAGCTGCATGCAAGAGAATTGCTCATTTGTTGGAAATTACAAGGAGCTTAAGAGGCATGTGAGGGCAGAACACCCCTCTGCACGGCCGCGTGAAGTGGATCCAGTACTCGAACAGAAATGGAGAAGGCTTGAACATGAGCGGGAGACGGATGATGTGATCAGCACAATACAGTCTTCCATGCCAGGGGCAATGGTTTTTGGAGATTACGTAATAGAAGGAAATAATTATGGATTTGATACGGACGAAGAGGATGGTGGTTTCGATGCGGAAGCTGGGGAAAGGAATGGAGGATTTGGGTTGGGCTTTGATGGTAATCTGGTGAATGTCTTTTTCCTATTGCATGCATTTGGGTCATCAGGGACTGGGCGACTGAGGCAGCCTGAGAGGGCATTGCACCACCCATCGGACGGTAGTGCAGTTGGCATCCGGCACAGCACTCCTATTGGTGGTTCGGATTCCTCAGATCAAGATGATGAGAATGACAGTAATGGTGATAATGCTGGTGGTGGTATGTCATTGGTGAGTCGACTCCGTCGTCATGGCAGGGTGTTGTTGGGACGCTCTGGGAGGAGACGAAGGCGTAGAGAAGGAAATAGTGATCAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

363

Amino Acids

40.45

Weight (kDa)

8.19

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68140 AT1G68140 AT1G68140 AT1G68140
fragaria_vesca	FvH4_5g29920 FvH4_5g29920
malus_domestica	MD08G1226800.v1.1 MD15G1419100.v1.1
prunus_persica	Prupe.1G563900_v2.0.a1
pyrus_communis	pycom08g19780 pycom15g37200
rosa_chinensis	RchiOBHm_Chr7g0223751
rosa_laevigata	RLG00000001952
rosa_multiflora	Rmu_co8070298.1_g000001 Rmu_sc0008835.1_g000021
rosa_roxburghii	Rroxscaffold_3G00235400
rosa_rugosa	Rorug07G0219300 Rorug07G0219400 Rorug07G0219500 Rorug07G0219600
rosa_samantha	Rh7AG362200 Rh7BG353600 Rh7CG380800 Rh7DG357500
rosa_wichuraiana	Rw7G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1014
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	1006
AccII	CGCG	1 cut(s)	568
AciI	CCGC	3 cut(s)	566, 619, 746
AclWI	GGATC	3 cut(s)	102, 572, 585
AcoI	YGGCCR	3 cut(s)	268, 368, 563
AfaI	GTAC	2 cut(s)	275, 585
AfiI	CCNNNNNNNGG	8 cut(s)	326, 414, 415, 561, 663, 883, 887, 926
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	2 cut(s)	152, 231
AgsI	TTSAA	2 cut(s)	446, 611
AhlI	ACTAGT	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	661
AleI	CACNNNNGTG	1 cut(s)	379
AluBI	AGCT	5 cut(s)	284, 397, 483, 526, 752
AluI	AGCT	5 cut(s)	284, 397, 483, 526, 752
Alw26I	GTCTC	3 cut(s)	394, 617, 1045
AlwI	GGATC	3 cut(s)	102, 572, 585
AlwNI	CAGNNNCTG	2 cut(s)	362, 842
AoxI	GGCC	3 cut(s)	268, 368, 563
ApeKI	GCWGC	2 cut(s)	483, 856
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	4 cut(s)	436, 811, 983, 1012
BaeGI	GKGCMC	1 cut(s)	104
BalI	TGGCCA	2 cut(s)	270, 370
BamHI	GGATCC	1 cut(s)	577
BauI	CACGAG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	645
BbvI	GCAGC	2 cut(s)	470, 868
BccI	CCATC	3 cut(s)	725, 782, 889
BceAI	ACGGC	2 cut(s)	170, 578
BciT130I	CCWGG	1 cut(s)	663
BciVI	GTATCC	1 cut(s)	183
BclI	TGATCA	3 cut(s)	307, 636, 1078
BcoDI	GTCTC	3 cut(s)	394, 617, 1045
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	412
BfrI	CTTAAG	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	3 cut(s)	484, 566, 857
BlsI	GCNGC	3 cut(s)	485, 567, 858
BmcAI	AGTACT	1 cut(s)	585
Bme1390I	CCNGG	1 cut(s)	663
BmiI	GGNNCC	2 cut(s)	331, 579
BmrFI	CCNGG	1 cut(s)	663
BmrI	ACTGGG	2 cut(s)	148, 852
BmsI	GCATC	3 cut(s)	136, 733, 912
BmuI	ACTGGG	2 cut(s)	148, 852
BpiI	GAAGAC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	688
BsaBI	GATNNNNATC	2 cut(s)	339, 792
BsaJI	CCNNGG	1 cut(s)	662
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 672, 702
Bsc4I	CCNNNNNNNGG	8 cut(s)	326, 414, 415, 561, 663, 883, 887, 926
Bse1I	ACTGG	4 cut(s)	143, 271, 581, 847
Bse3DI	GCAATG	4 cut(s)	65, 320, 675, 869
Bse8I	GATNNNNATC	2 cut(s)	339, 792
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	662
BseGI	GGATG	4 cut(s)	148, 634, 736, 903
BseJI	GATNNNNATC	2 cut(s)	339, 792
BseLI	CCNNNNNNNGG	8 cut(s)	326, 414, 415, 561, 663, 883, 887, 926
BseMI	GCAATG	4 cut(s)	65, 320, 675, 869
BseMII	CTCAG	4 cut(s)	405, 842, 852, 954
BseNI	ACTGG	4 cut(s)	143, 271, 581, 847
BseRI	GAGGAG	1 cut(s)	1063
BseSI	GKGCMC	1 cut(s)	104
BseX3I	CGGCCG	1 cut(s)	563
BseXI	GCAGC	2 cut(s)	470, 868
BseYI	CCCAGC	1 cut(s)	752
BsgI	GTGCAG	2 cut(s)	543, 915
Bsh1236I	CGCG	1 cut(s)	568
Bsh1285I	CGRYCG	1 cut(s)	566
BshFI	GGCC	3 cut(s)	270, 370, 565
BsiEI	CGRYCG	1 cut(s)	566
BsiSI	CCGG	2 cut(s)	250, 907
BslFI	GGGAC	3 cut(s)	33, 853, 1050
BslI	CCNNNNNNNGG	8 cut(s)	326, 414, 415, 561, 663, 883, 887, 926
BsmAI	GTCTC	3 cut(s)	394, 617, 1045
BsmBI	CGTCTC	2 cut(s)	617, 1045
BsmFI	GGGAC	3 cut(s)	33, 853, 1050
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	270, 370, 565
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	6 cut(s)	94, 307, 577, 636, 943, 1078
BspACI	CCGC	3 cut(s)	566, 619, 746
BspANI	GGCC	3 cut(s)	270, 370, 565
BspCNI	CTCAG	4 cut(s)	404, 843, 853, 953
BspFNI	CGCG	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	331, 579
BspPI	GGATC	3 cut(s)	102, 572, 585
BspTI	CTTAAG	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	619
BsrDI	GCAATG	4 cut(s)	65, 320, 675, 869
BsrI	ACTGG	4 cut(s)	143, 271, 581, 847
BssECI	CCNNGG	1 cut(s)	662
BssMI	GATC	6 cut(s)	94, 307, 577, 636, 943, 1078
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	5 cut(s)	263, 439, 651, 890, 965
Bst6I	CTCTTC	1 cut(s)	720
BstAFI	CTTAAG	1 cut(s)	527
BstBAI	YACGTR	1 cut(s)	688
BstC8I	GCNNGC	5 cut(s)	372, 399, 403, 488, 822
BstDEI	CTNAG	4 cut(s)	391, 851, 861, 940
BstF5I	GGATG	4 cut(s)	148, 634, 736, 903
BstFNI	CGCG	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	6 cut(s)	97, 310, 580, 639, 946, 1081
BstMAI	GTCTC	3 cut(s)	394, 617, 1045
BstMBI	GATC	6 cut(s)	94, 307, 577, 636, 943, 1078
BstMCI	CGRYCG	1 cut(s)	566
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 853
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	6 cut(s)	156, 235, 405, 490, 539, 824
BstSCI	CCNGG	1 cut(s)	661
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	104
BstSNI	TACGTA	1 cut(s)	688
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	2 cut(s)	470, 868
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	2 cut(s)	94, 577
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	2 cut(s)	94, 577
BstZI	CGGCCG	1 cut(s)	563
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	270, 370, 565
BtsCI	GGATG	4 cut(s)	148, 634, 736, 903
Cac8I	GCNNGC	5 cut(s)	372, 399, 403, 488, 822
CaiI	CAGNNNCTG	2 cut(s)	362, 842
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	72
CseI	GACGC	2 cut(s)	33, 1047
Csp6I	GTAC	2 cut(s)	274, 584
CviQI	GTAC	2 cut(s)	274, 584
DdeI	CTNAG	4 cut(s)	391, 851, 861, 940
DpnI	GATC	6 cut(s)	96, 309, 579, 638, 945, 1080
DpnII	GATC	6 cut(s)	94, 307, 577, 636, 943, 1078
DrdI	GACNNNNNNGTC	1 cut(s)	1014
DseDI	GACNNNNNNGTC	1 cut(s)	1014
EaeI	YGGCCR	3 cut(s)	268, 368, 563
EagI	CGGCCG	1 cut(s)	563
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
EclXI	CGGCCG	1 cut(s)	563
Eco105I	TACGTA	1 cut(s)	688
Eco52I	CGGCCG	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	661
EcoT22I	ATGCAT	1 cut(s)	826
Esp3I	CGTCTC	2 cut(s)	617, 1045
FaqI	GGGAC	3 cut(s)	33, 853, 1050
FauI	CCCGC	1 cut(s)	612
FbaI	TGATCA	3 cut(s)	307, 636, 1078
FblI	GTMKAC	1 cut(s)	1006
Fnu4HI	GCNGC	3 cut(s)	484, 566, 857
FokI	GGATG	4 cut(s)	155, 641, 743, 890
Fsp4HI	GCNGC	3 cut(s)	484, 566, 857
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	3 cut(s)	484, 566, 857
GsaI	CCCAGC	1 cut(s)	756
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	270, 370, 565
HapII	CCGG	2 cut(s)	250, 907
HgaI	GACGC	2 cut(s)	33, 1047
HhaI	GCGC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	1007
HindII	GTYRAC	1 cut(s)	1007
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	4 cut(s)	359, 935, 1003, 1008
HpaII	CCGG	2 cut(s)	250, 907
HphI	GGTGA	4 cut(s)	436, 811, 983, 1012
Hpy166II	GTNNAC	1 cut(s)	1007
Hpy188I	TCNGA	7 cut(s)	307, 334, 364, 394, 886, 934, 943
Hpy188III	TCNNGA	6 cut(s)	39, 80, 117, 209, 443, 947
Hpy8I	GTNNAC	1 cut(s)	1007
Hpy99I	CGWCG	2 cut(s)	27, 1017
HpyAV	CCTTC	5 cut(s)	421, 597, 689, 1050, 1061
HpyCH4III	ACNGT	5 cut(s)	263, 439, 651, 890, 965
HpyCH4IV	ACGT	1 cut(s)	687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 853
HpyF3I	CTNAG	4 cut(s)	391, 851, 861, 940
HpySE526I	ACGT	1 cut(s)	687
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	3 cut(s)	307, 636, 1078
Kzo9I	GATC	6 cut(s)	94, 307, 577, 636, 943, 1078
LmnI	GCTCC	2 cut(s)	119, 523
Lsp1109I	GCAGC	2 cut(s)	470, 868
LweI	GCATC	3 cut(s)	136, 733, 912
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	687
MalI	GATC	6 cut(s)	96, 309, 579, 638, 945, 1080
MbiI	CCGCTC	1 cut(s)	619
MboI	GATC	6 cut(s)	94, 307, 577, 636, 943, 1078
MboII	GAAGA	5 cut(s)	54, 118, 182, 645, 737
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	2 cut(s)	94, 577
MhlI	GDGCHC	1 cut(s)	104
MlsI	TGGCCA	2 cut(s)	270, 370
MluCI	AATT	4 cut(s)	345, 496, 514, 703
MluNI	TGGCCA	2 cut(s)	270, 370
MlyI	GAGTC	2 cut(s)	1002, 1012
MmeI	TCCRAC	2 cut(s)	282, 490
Mox20I	TGGCCA	2 cut(s)	270, 370
Mph1103I	ATGCAT	1 cut(s)	826
MscI	TGGCCA	2 cut(s)	270, 370
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	379
Msp20I	TGGCCA	2 cut(s)	270, 370
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	2 cut(s)	250, 907
MspR9I	CCNGG	1 cut(s)	663
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	663
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	2 cut(s)	532, 853
NdeII	GATC	6 cut(s)	94, 307, 577, 636, 943, 1078
NlaIV	GGNNCC	2 cut(s)	331, 579
NsiI	ATGCAT	1 cut(s)	826
NspI	RCATGY	6 cut(s)	156, 235, 405, 490, 539, 824
OliI	CACNNNNGTG	1 cut(s)	379
PaeI	GCATGC	3 cut(s)	405, 490, 824
PagI	TCATGA	1 cut(s)	208
PciI	ACATGT	2 cut(s)	152, 231
PcsI	WCGNNNNNNNCGW	1 cut(s)	1012
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	359, 935
PflFI	GACNNNGTC	1 cut(s)	1011
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	485, 567, 858
PleI	GAGTC	2 cut(s)	1002, 1011
PpsI	GAGTC	2 cut(s)	1002, 1011
Ppu21I	YACGTR	1 cut(s)	688
PscI	ACATGT	2 cut(s)	152, 231
Psp6I	CCWGG	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	752
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	331, 579
PstNI	CAGNNNCTG	2 cut(s)	362, 842
PsuI	RGATCY	2 cut(s)	94, 577
PsyI	GACNNNGTC	1 cut(s)	1011
RsaI	GTAC	2 cut(s)	275, 585
RsaNI	GTAC	2 cut(s)	274, 584
RseI	CAYNNNNRTG	1 cut(s)	379
SalI	GTCGAC	1 cut(s)	1005
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	3 cut(s)	484, 566, 857
Sau3AI	GATC	6 cut(s)	94, 307, 577, 636, 943, 1078
ScaI	AGTACT	1 cut(s)	585
SchI	GAGTC	2 cut(s)	1002, 1012
ScrFI	CCNGG	1 cut(s)	663
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	8 cut(s)	13, 286, 399, 426, 485, 528, 690, 754
SfaNI	GCATC	3 cut(s)	136, 733, 912
SfcI	CTRYAG	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
SnaBI	TACGTA	1 cut(s)	688
SpeI	ACTAGT	1 cut(s)	242
SphI	GCATGC	3 cut(s)	405, 490, 824
Sse9I	AATT	4 cut(s)	345, 496, 514, 703
SsiI	CCGC	3 cut(s)	566, 619, 746
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	661
TaaI	ACNGT	5 cut(s)	263, 439, 651, 890, 965
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	3 cut(s)	588, 741, 1006
TasI	AATT	4 cut(s)	345, 496, 514, 703
TatI	WGTACW	2 cut(s)	273, 583
TauI	GCSGC	1 cut(s)	568
TfiI	GAWTC	2 cut(s)	359, 935
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseI	GCWGC	2 cut(s)	483, 856
TspGWI	ACGGA	3 cut(s)	641, 734, 1001
Tth111I	GACNNNGTC	1 cut(s)	1011
Van91I	CCANNNNNTGG	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	527
XceI	RCATGY	6 cut(s)	156, 235, 405, 490, 539, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	1006
XspI	CTAG	1 cut(s)	243
ZrmI	AGTACT	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.