Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008835.1

Orthogroup ID

OG0007434

Physical Location & Seq

Genomic Coordinates Reverse (-)

79741 .. 80320

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008835.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgcaagaaaactgctcatttgttggaaattacaaggagcttaggaagcatgttaaggcagagcacccgtcagcccggccacgggaagtggatcctgtagttgaacagaaatggagaagccttgaacgtgagagggaacaggatgatatgctagctgcaggaaggaatacagggttcgggttgggtttggatgtggttcttctttggcatgcatttgtgtccaacagacggatgaggcagcatgagagggcattccaccaggcatcagagggtagtgttgccatccggcacacgactcctattggtggtttggattcttctgaccaagatgacgacaatgacagtaacggtgatgatgatggcggcatgtcattggtgagcctgctccgacgtcatggcagggtcttgctgggacgctccgggtggagacgtagacgtagagaagcaaatagtgaggaacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

154

Amino Acids

17.63

Weight (kDa)

6.66

Isoelectric Point (pI)

65.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68140 AT1G68140 AT1G68140 AT1G68140
fragaria_vesca	FvH4_5g29920 FvH4_5g29920
malus_domestica	MD08G1226800.v1.1 MD15G1419100.v1.1
prunus_persica	Prupe.1G563900_v2.0.a1
pyrus_communis	pycom08g19780 pycom15g37200
rosa_chinensis	RchiOBHm_Chr7g0223751
rosa_laevigata	RLG00000001952
rosa_multiflora	Rmu_co8070298.1_g000001 Rmu_sc0008835.1_g000021
rosa_roxburghii	Rroxscaffold_3G00235400
rosa_rugosa	Rorug07G0219300 Rorug07G0219400 Rorug07G0219500 Rorug07G0219600
rosa_samantha	Rh7AG362200 Rh7BG353600 Rh7CG380800 Rh7DG357500
rosa_wichuraiana	Rw7G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	433
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	2 cut(s)	86, 99
AcoI	YGGCCR	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	391
AfiI	CCNNNNNNNGG	4 cut(s)	81, 82, 228, 305
AgsI	TTSAA	2 cut(s)	104, 125
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	40, 155
AluI	AGCT	2 cut(s)	40, 155
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	2 cut(s)	86, 99
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	155, 238
AsuC2I	CCSGG	2 cut(s)	76, 421
AsuHPI	GGTGA	2 cut(s)	362, 388
AsuNHI	GCTAGC	1 cut(s)	151
BamHI	GGATCC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	142, 250
BccI	CCATC	2 cut(s)	290, 353
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	2 cut(s)	76, 421
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	2 cut(s)	96, 156
BisI	GCNGC	3 cut(s)	156, 239, 364
BlsI	GCNGC	3 cut(s)	157, 240, 365
Bme1390I	CCNGG	3 cut(s)	76, 260, 421
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	3 cut(s)	76, 260, 421
BmsI	GCATC	1 cut(s)	272
BmtI	GCTAGC	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	76, 421
BsaHI	GRCGYC	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 82, 228, 305
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	4 cut(s)	148, 196, 237, 282
BseLI	CCNNNNNNNGG	4 cut(s)	81, 82, 228, 305
BseXI	GCAGC	2 cut(s)	142, 250
BseYI	CCCAGC	1 cut(s)	409
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	76, 286, 420
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	4 cut(s)	81, 82, 228, 305
BsmAI	GTCTC	1 cut(s)	421
BsmBI	CGTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	160
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	86, 99
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	91
BssNI	GRCGYC	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	344, 350
BstACI	GRCGYC	1 cut(s)	391
BstC8I	GCNNGC	3 cut(s)	153, 210, 383
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	4 cut(s)	148, 196, 237, 282
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	3 cut(s)	53, 212, 370
BstSCI	CCNGG	3 cut(s)	74, 258, 419
BstSFI	CTRYAG	2 cut(s)	96, 156
BstV1I	GCAGC	2 cut(s)	142, 250
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	4 cut(s)	148, 196, 237, 282
Cac8I	GCNNGC	3 cut(s)	153, 210, 383
CseI	GACGC	1 cut(s)	423
CviAII	CATG	5 cut(s)	50, 209, 242, 367, 395
CviJI	RGCY	6 cut(s)	40, 74, 79, 120, 155, 381
CviKI_1	RGCY	6 cut(s)	40, 74, 79, 120, 155, 381
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	5 cut(s)	53, 212, 245, 370, 398
FaiI	YATR	6 cut(s)	51, 149, 210, 243, 368, 396
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	5 cut(s)	49, 208, 241, 366, 394
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	3 cut(s)	156, 239, 364
FokI	GGATG	4 cut(s)	155, 203, 244, 269
Fsp4HI	GCNGC	3 cut(s)	156, 239, 364
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	3 cut(s)	156, 239, 364
GsaI	CCCAGC	1 cut(s)	413
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	3 cut(s)	76, 286, 420
HgaI	GACGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	5 cut(s)	53, 212, 245, 370, 398
HinfI	GANTC	2 cut(s)	295, 314
HpaII	CCGG	3 cut(s)	76, 286, 420
HphI	GGTGA	2 cut(s)	362, 388
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	3 cut(s)	268, 322, 389
Hpy8I	GTNNAC	1 cut(s)	434
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	1 cut(s)	156
HpyCH4III	ACNGT	2 cut(s)	344, 350
HpyCH4IV	ACGT	4 cut(s)	127, 391, 430, 436
HpyCH4V	TGCA	3 cut(s)	4, 158, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	4 cut(s)	127, 391, 430, 436
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	5 cut(s)	53, 212, 245, 370, 398
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	3 cut(s)	37, 390, 422
Lsp1109I	GCAGC	2 cut(s)	142, 250
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	4 cut(s)	127, 391, 430, 436
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	191, 309
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	289
MmeI	TCCRAC	3 cut(s)	4, 246, 412
MnlI	CCTC	5 cut(s)	126, 228, 240, 262, 448
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	1 cut(s)	54
MspI	CCGG	3 cut(s)	76, 286, 420
MspR9I	CCNGG	3 cut(s)	76, 260, 421
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	46
NciI	CCSGG	2 cut(s)	76, 421
NdeII	GATC	1 cut(s)	91
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	5 cut(s)	53, 212, 245, 370, 398
NlaIV	GGNNCC	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	3 cut(s)	53, 212, 370
PaeI	GCATGC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	157, 240, 365
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	3 cut(s)	156, 239, 364
Sau3AI	GATC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	76, 260, 421
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	6 cut(s)	42, 130, 157, 394, 433, 439
SfaNI	GCATC	1 cut(s)	272
SfcI	CTRYAG	2 cut(s)	96, 156
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	363
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	3 cut(s)	74, 258, 419
TaaI	ACNGT	2 cut(s)	344, 350
TaiI	ACGT	4 cut(s)	130, 394, 433, 439
TasI	AATT	1 cut(s)	28
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseI	GCWGC	2 cut(s)	155, 238
TspGWI	ACGGA	1 cut(s)	244
XceI	RCATGY	3 cut(s)	53, 212, 370
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	1 cut(s)	152
ZraI	GACGTC	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.