Rroxscaffold_3G00235400

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007434
Physical Location & Seq
Reverse (-)
22352791 .. 22357404
4614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00235400.1

Sequence Viewer

Length: 1107 bp
ATGTCCCCTGGTTGTGGTCAGGTAACACTTAAGTATACCCGGAAAATGGCAAAAGGTAGCAGGGGACGACGCAGGATTGCTTCTCGACAATACAGGTCAGCTCCATACCCATTGAGCTCTAATCAAGATATCTTTGAGGATCTGTGCCCTAAGAAATGCTCCAAAAACTTGGAGAAAAAGGACTGGGAGGATGCAACATGTTCTGTGTGCATGGAATACCCTCACAATGCTGTTCTTCTCCTATGTTCCTCTCATGACAAAGGTTGTCGTCCTTACATGTGTGGGACTAGTTTTCGACATTCCAACTGTCTTGACCAGTACAAGAAAGCTTACACAAAAATAGTGTCATGTGATCATGGACAATCATTGCATGGCTCTGCGACAAATCCAATTGTGGTACCAGATTCTGGATTGCCAGTTGAGAAGTGTGAAATCACAGAGCTTGCATGCCCCCTCTGTAGGGGCCAGGTGAAAGGCTGGACTGTTCTTGAACCAGCACGAGAATATCTGGATGCAAAACAGAGAAGCTGCATGCAAGAAAACTGCTCATTTGTTGGAAATTACAAGGAGCTTAGGAAGCATGTTAAGGCAGAGCACCCATCAGCCCGGCCACGGGAAGTGGATCCTGTAGTTGAACAGAAATGGAGAAGCCTTGAACGTGAGAGGGAACAGGATGATGTGATTAGCACAATACAGTCGTCCATGCCAGGAGCAATGTTTTTCGGAGATTATGTTATAGAAGGAAATAATTATGGATTTGATTCGGACGAAGAGGATGGTGGTTTTGATGCAGATGCTGCAGGAAGGAATGCAGGGTTTGGGTTGGGTTTGGATGTGGTTCTTCTTTGGCATGCATTTGGGCCCAACAGACGGATGAGGCAGCATGAGAGGGCATTCCACCAGGCATCAGACGGTAGCGTTGGCATCCGCCACACGACTCCTATTGGTGGTTTGGATTCCTCTGATCAAGATGACGACAATGACAGTAACGGTGATGATGACGGCGGCATGTCATTGGTGAGCCGGCTCCGGCGTCATGGCAGGGTCTTGCTGGGACGCTCCGGGAGGAGACGTAGACGTAGAGAAGCAAATAGTGAGGAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

368

Amino Acids

41.31

Weight (kDa)

7.53

Isoelectric Point (pI)

64.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 63 - 229 5.3e-71 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 397
AccB1I GGYRCC 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 407
AccI GTMKAC 2 cut(s) 35, 1075
AciI CCGC 2 cut(s) 928, 1005
AclWI GGATC 3 cut(s) 147, 617, 630
AcoI YGGCCR 1 cut(s) 608
AcyI GRCGYC 1 cut(s) 1033
AfaI GTAC 2 cut(s) 320, 399
AfiI CCNNNNNNNGG 9 cut(s) 14, 46, 407, 459, 460, 612, 613, 870, 947
AflII CTTAAG 1 cut(s) 29
AflIII ACRYGT 2 cut(s) 197, 276
AgsI TTSAA 3 cut(s) 491, 635, 656
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 4 cut(s) 7, 465, 706, 900
AluBI AGCT 6 cut(s) 101, 117, 329, 442, 528, 571
AluI AGCT 6 cut(s) 101, 117, 329, 442, 528, 571
Alw21I GWGCWC 2 cut(s) 119, 597
Alw26I GTCTC 1 cut(s) 1063
AlwI GGATC 3 cut(s) 147, 617, 630
AlwNI CAGNNNCTG 2 cut(s) 407, 797
AoxI GGCC 3 cut(s) 463, 608, 860
ApaI GGGCCC 1 cut(s) 864
ApeKI GCWGC 3 cut(s) 528, 797, 880
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp718I GGTACC 1 cut(s) 397
AspS9I GGNCC 3 cut(s) 463, 860, 861
AsuC2I CCSGG 3 cut(s) 40, 607, 1063
AsuHPI GGTGA 3 cut(s) 481, 1004, 1030
BaeGI GKGCMC 2 cut(s) 149, 864
BamHI GGATCC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 397
BanII GRGCYC 2 cut(s) 119, 864
BauI CACGAG 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 119, 597
BbvI GCAGC 3 cut(s) 515, 784, 892
BccI CCATC 2 cut(s) 607, 770
BceAI ACGGC 1 cut(s) 1018
BciT130I CCWGG 4 cut(s) 9, 467, 708, 902
BclI TGATCA 2 cut(s) 352, 964
BcnI CCSGG 3 cut(s) 40, 607, 1063
BcoDI GTCTC 1 cut(s) 1063
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 3 cut(s) 457, 627, 798
BfrI CTTAAG 1 cut(s) 29
BisI GCNGC 4 cut(s) 529, 798, 881, 1006
BlsI GCNGC 4 cut(s) 530, 799, 882, 1007
Bme1390I CCNGG 7 cut(s) 9, 40, 467, 607, 708, 902, 1063
BmgT120I GGNCC 3 cut(s) 463, 860, 861
BmiI GGNNCC 5 cut(s) 399, 464, 624, 862, 1028
BmrFI CCNGG 7 cut(s) 9, 40, 467, 607, 708, 902, 1063
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 6 cut(s) 181, 502, 778, 784, 914, 933
BmuI ACTGGG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 572
BpuMI CCSGG 3 cut(s) 40, 607, 1063
BsaHI GRCGYC 1 cut(s) 1033
BsaJI CCNNGG 2 cut(s) 7, 611
BsaXI ACNNNNNCTCC 4 cut(s) 717, 747, 1057, 1087
Bsc4I CCNNNNNNNGG 9 cut(s) 14, 46, 407, 459, 460, 612, 613, 870, 947
Bse118I RCCGGY 1 cut(s) 1023
Bse1I ACTGG 3 cut(s) 188, 316, 416
Bse3DI GCAATG 2 cut(s) 365, 720
BseBI CCWGG 4 cut(s) 9, 467, 708, 902
BseDI CCNNGG 2 cut(s) 7, 611
BseGI GGATG 7 cut(s) 196, 517, 679, 781, 838, 879, 924
BseLI CCNNNNNNNGG 9 cut(s) 14, 46, 407, 459, 460, 612, 613, 870, 947
BseMI GCAATG 2 cut(s) 365, 720
BseNI ACTGG 3 cut(s) 188, 316, 416
BseRI GAGGAG 1 cut(s) 1081
BseSI GKGCMC 2 cut(s) 149, 864
BseXI GCAGC 3 cut(s) 515, 784, 892
BseYI CCCAGC 1 cut(s) 1051
BshFI GGCC 3 cut(s) 465, 610, 862
BshNI GGYRCC 1 cut(s) 397
BsiHKAI GWGCWC 2 cut(s) 119, 597
BsiSI CCGG 5 cut(s) 40, 607, 1024, 1030, 1062
BslFI GGGAC 3 cut(s) 78, 298, 1068
BslI CCNNNNNNNGG 9 cut(s) 14, 46, 407, 459, 460, 612, 613, 870, 947
BsmAI GTCTC 1 cut(s) 1063
BsmBI CGTCTC 1 cut(s) 1063
BsmFI GGGAC 3 cut(s) 78, 298, 1068
BsmI GAATGC 2 cut(s) 814, 893
BsnI GGCC 3 cut(s) 465, 610, 862
Bsp120I GGGCCC 1 cut(s) 860
Bsp1286I GDGCHC 4 cut(s) 119, 149, 597, 864
Bsp143I GATC 4 cut(s) 139, 352, 622, 964
BspACI CCGC 2 cut(s) 928, 1005
BspANI GGCC 3 cut(s) 465, 610, 862
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 5 cut(s) 399, 464, 624, 862, 1028
BspMAI CTGCAG 1 cut(s) 802
BspPI GGATC 3 cut(s) 147, 617, 630
BspT107I GGYRCC 1 cut(s) 397
BspTI CTTAAG 1 cut(s) 29
BsrDI GCAATG 2 cut(s) 365, 720
BsrFI RCCGGY 1 cut(s) 1023
BsrI ACTGG 3 cut(s) 188, 316, 416
BssAI RCCGGY 1 cut(s) 1023
BssECI CCNNGG 2 cut(s) 7, 611
BssMI GATC 4 cut(s) 139, 352, 622, 964
BssNAI GTATAC 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 1033
BssSI CACGAG 1 cut(s) 498
Bst1107I GTATAC 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 498
Bst2UI CCWGG 4 cut(s) 9, 467, 708, 902
Bst4CI ACNGT 6 cut(s) 308, 484, 696, 914, 986, 992
Bst6I CTCTTC 1 cut(s) 765
BstACI GRCGYC 1 cut(s) 1033
BstAFI CTTAAG 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 797
BstC8I GCNNGC 5 cut(s) 444, 448, 533, 852, 1025
BstDEI CTNAG 2 cut(s) 150, 572
BstDSI CCRYGG 1 cut(s) 611
BstF5I GGATG 7 cut(s) 196, 517, 679, 781, 838, 879, 924
BstKTI GATC 4 cut(s) 142, 355, 625, 967
BstMAI GTCTC 1 cut(s) 1063
BstMBI GATC 4 cut(s) 139, 352, 622, 964
BstMWI GCNNNNNNNGC 2 cut(s) 577, 797
BstNI CCWGG 4 cut(s) 9, 467, 708, 902
BstNSI RCATGY 7 cut(s) 201, 280, 450, 535, 584, 854, 1012
BstSCI CCNGG 7 cut(s) 7, 38, 465, 605, 706, 900, 1061
BstSFI CTRYAG 3 cut(s) 457, 627, 798
BstSLI GKGCMC 2 cut(s) 149, 864
BstV1I GCAGC 3 cut(s) 515, 784, 892
BstX2I RGATCY 2 cut(s) 139, 622
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 2 cut(s) 139, 622
BstZ17I GTATAC 1 cut(s) 36
BsuRI GGCC 3 cut(s) 465, 610, 862
BtgI CCRYGG 1 cut(s) 611
BtsCI GGATG 7 cut(s) 196, 517, 679, 781, 838, 879, 924
Cac8I GCNNGC 5 cut(s) 444, 448, 533, 852, 1025
CaiI CAGNNNCTG 2 cut(s) 407, 797
CciI TCATGA 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 1023
Cfr13I GGNCC 3 cut(s) 463, 860, 861
CseI GACGC 3 cut(s) 78, 1022, 1065
Csp6I GTAC 2 cut(s) 319, 398
CviQI GTAC 2 cut(s) 319, 398
DdeI CTNAG 2 cut(s) 150, 572
DpnI GATC 4 cut(s) 141, 354, 624, 966
DpnII GATC 4 cut(s) 139, 352, 622, 964
EaeI YGGCCR 1 cut(s) 608
Eam1104I CTCTTC 1 cut(s) 765
EarI CTCTTC 1 cut(s) 765
EciI GGCGGA 1 cut(s) 917
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 119, 864
Eco32I GATATC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 117
EcoRII CCWGG 4 cut(s) 7, 465, 706, 900
EcoRV GATATC 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 856
EcoT38I GRGCYC 2 cut(s) 119, 864
Esp3I CGTCTC 1 cut(s) 1063
FaqI GGGAC 3 cut(s) 78, 298, 1068
FbaI TGATCA 2 cut(s) 352, 964
FblI GTMKAC 2 cut(s) 35, 1075
Fnu4HI GCNGC 4 cut(s) 529, 798, 881, 1006
FokI GGATG 7 cut(s) 203, 524, 686, 788, 845, 886, 911
FriOI GRGCYC 2 cut(s) 119, 864
Fsp4HI GCNGC 4 cut(s) 529, 798, 881, 1006
FspBI CTAG 1 cut(s) 288
GluI GCNGC 4 cut(s) 529, 798, 881, 1006
GsaI CCCAGC 1 cut(s) 1055
HaeIII GGCC 3 cut(s) 465, 610, 862
HapII CCGG 5 cut(s) 40, 607, 1024, 1030, 1062
HgaI GACGC 3 cut(s) 78, 1022, 1065
Hin1I GRCGYC 1 cut(s) 1033
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 4 cut(s) 404, 761, 937, 956
HpaII CCGG 5 cut(s) 40, 607, 1024, 1030, 1062
HphI GGTGA 3 cut(s) 481, 1004, 1030
Hpy166II GTNNAC 2 cut(s) 36, 1076
Hpy188I TCNGA 4 cut(s) 725, 766, 910, 964
Hpy188III TCNNGA 8 cut(s) 84, 125, 254, 311, 408, 488, 509, 968
Hpy8I GTNNAC 2 cut(s) 36, 1076
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 734, 798
HpyCH4III ACNGT 6 cut(s) 308, 484, 696, 914, 986, 992
HpyCH4IV ACGT 3 cut(s) 658, 1072, 1078
HpyF10VI GCNNNNNNNGC 2 cut(s) 577, 797
HpyF3I CTNAG 2 cut(s) 150, 572
HpySE526I ACGT 3 cut(s) 658, 1072, 1078
Hsp92I GRCGYC 1 cut(s) 1033
KpnI GGTACC 1 cut(s) 401
KroI GCCGGC 1 cut(s) 1023
KroNI GCCGGC 1 cut(s) 1025
Ksp22I TGATCA 2 cut(s) 352, 964
Kzo9I GATC 4 cut(s) 139, 352, 622, 964
LmnI GCTCC 6 cut(s) 106, 164, 568, 710, 1032, 1064
Lsp1109I GCAGC 3 cut(s) 515, 784, 892
LweI GCATC 6 cut(s) 181, 502, 778, 784, 914, 933
MaeI CTAG 1 cut(s) 288
MaeII ACGT 3 cut(s) 658, 1072, 1078
MaeIII GTNAC 2 cut(s) 22, 986
MalI GATC 4 cut(s) 141, 354, 624, 966
MboI GATC 4 cut(s) 139, 352, 622, 964
MboII GAAGA 3 cut(s) 227, 782, 833
MfeI CAATTG 1 cut(s) 390
MflI RGATCY 2 cut(s) 139, 622
MhlI GDGCHC 4 cut(s) 119, 149, 597, 864
MluCI AATT 3 cut(s) 390, 559, 748
MlyI GAGTC 1 cut(s) 931
MmeI TCCRAC 2 cut(s) 327, 535
Mph1103I ATGCAT 1 cut(s) 856
MroNI GCCGGC 1 cut(s) 1023
MseI TTAA 2 cut(s) 30, 585
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 5 cut(s) 40, 607, 1024, 1030, 1062
MspR9I CCNGG 7 cut(s) 9, 40, 467, 607, 708, 902, 1063
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 2 cut(s) 814, 893
MvaI CCWGG 4 cut(s) 9, 467, 708, 902
MwoI GCNNNNNNNGC 2 cut(s) 577, 797
NaeI GCCGGC 1 cut(s) 1025
NciI CCSGG 3 cut(s) 40, 607, 1063
NdeII GATC 4 cut(s) 139, 352, 622, 964
NgoMIV GCCGGC 1 cut(s) 1023
NlaIV GGNNCC 5 cut(s) 399, 464, 624, 862, 1028
NsiI ATGCAT 1 cut(s) 856
NspI RCATGY 7 cut(s) 201, 280, 450, 535, 584, 854, 1012
PaeI GCATGC 3 cut(s) 450, 535, 854
PagI TCATGA 1 cut(s) 253
PciI ACATGT 2 cut(s) 197, 276
PctI GAATGC 2 cut(s) 814, 893
PdiI GCCGGC 1 cut(s) 1025
PfeI GAWTC 3 cut(s) 404, 761, 956
PflMI CCANNNNNTGG 1 cut(s) 407
PfoI TCCNGGA 1 cut(s) 1061
PkrI GCNGC 4 cut(s) 530, 799, 882, 1007
PleI GAGTC 1 cut(s) 931
PpsI GAGTC 1 cut(s) 931
PscI ACATGT 2 cut(s) 197, 276
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 4 cut(s) 7, 465, 706, 900
PspFI CCCAGC 1 cut(s) 1051
PspGI CCWGG 4 cut(s) 7, 465, 706, 900
PspN4I GGNNCC 5 cut(s) 399, 464, 624, 862, 1028
PspOMI GGGCCC 1 cut(s) 860
PspPI GGNCC 3 cut(s) 463, 860, 861
PstI CTGCAG 1 cut(s) 802
PstNI CAGNNNCTG 2 cut(s) 407, 797
PsuI RGATCY 2 cut(s) 139, 622
RsaI GTAC 2 cut(s) 320, 399
RsaNI GTAC 2 cut(s) 319, 398
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 30, 585
SatI GCNGC 4 cut(s) 529, 798, 881, 1006
Sau3AI GATC 4 cut(s) 139, 352, 622, 964
Sau96I GGNCC 3 cut(s) 463, 860, 861
SchI GAGTC 1 cut(s) 931
ScrFI CCNGG 7 cut(s) 9, 40, 467, 607, 708, 902, 1063
SduI GDGCHC 4 cut(s) 119, 149, 597, 864
SfaNI GCATC 6 cut(s) 181, 502, 778, 784, 914, 933
SfcI CTRYAG 3 cut(s) 457, 627, 798
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SpeI ACTAGT 1 cut(s) 287
SphI GCATGC 3 cut(s) 450, 535, 854
Sse9I AATT 3 cut(s) 390, 559, 748
SsiI CCGC 2 cut(s) 928, 1005
SspMI CTAG 1 cut(s) 288
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 7 cut(s) 7, 38, 465, 605, 706, 900, 1061
TaaI ACNGT 6 cut(s) 308, 484, 696, 914, 986, 992
TaiI ACGT 3 cut(s) 661, 1075, 1081
TaqI TCGA 2 cut(s) 85, 295
TasI AATT 3 cut(s) 390, 559, 748
TatI WGTACW 1 cut(s) 318
TauI GCSGC 1 cut(s) 1008
TfiI GAWTC 3 cut(s) 404, 761, 956
Tru1I TTAA 2 cut(s) 30, 585
Tru9I TTAA 2 cut(s) 30, 585
TseI GCWGC 3 cut(s) 528, 797, 880
TspGWI ACGGA 1 cut(s) 886
Van91I CCANNNNNTGG 1 cut(s) 407
Vha464I CTTAAG 1 cut(s) 29
XceI RCATGY 7 cut(s) 201, 280, 450, 535, 584, 854, 1012
XmiI GTMKAC 2 cut(s) 35, 1075
XspI CTAG 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.