Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007434

Physical Location & Seq

Genomic Coordinates Reverse (-)

19695079 .. 19699242

Gene Structure 4164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0219400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

ATGTCGGTGACCACGGATGAGGACGTCGGTGGGGTTGCGACGGGAGGAGCGAAGAGGAGATGTAGGGCTGCGCAGCAAAACAAGGAGAGTAAGCGGGCTGCAGGGATTGGCTGCAGTGATGTAGGCTCTACATTTGCACTGGATCACACTAGTCAGTTCACCACGACTGAGATATTCAAGAGCAGACAATATTTAATAGAATGGGCTTCGCGTGTTGGGAGGTCGAATGGTTTCAGTATTGTGACATTAAGTTCTGACGTTGGTAAAAGCAATAGAAGAGCAACAATTACATTGGGTTGTGAAAGGAGTGGAAAATATGATAGACGAACTCCCAAGGAAGGGAAGAAAAAAAATTGTGGAAAGAAGTGTGGTTGTCCATTCAAGCTAAAGGGCAGAAAGCTAGAAACTAATGATGATTGGGAGTTGAAGGTTGTTGAAGGAATCCATAACCATGCAGCCTGGTACTCAAAGGCAGATATTTCAGTTTCTAGTAGATTACCTTCAGAGGACAAATCAAGGGGGAAGGATGTGTTTAAGGACGATATAAGTGAGAGTGGGTCTGAAATGCAATCATTGATGATTAAGTTGTCCAAGTACAACTACATTGAACAACATAGGAGCTGCCCACAGACCAAAACTATCTTAGATTTTTTCTTGACACACCTCTCTAGCTTTAAATTATTGCGTGCATTTGCACGTGTTTTGGAGGTGGAATGCATATCAAAGCAGGAGGGAATTCATGATGGGGCAATTTTAATGATTTTTGGACGCACATCAACTGATATACCATTTTTTGTGGGTATTGTATTCCTTTCTTCTAATAAAAAAGAAAGTTATGTATGGGCTTTACGAACATTGCAGGGTTTGATGGTTACTAGTGGTAATACTATGCCTGATATGATTGTGTTAATAACTACGGAGGTGGCTTTGATGGAAGCCGTTGAGGTTGTTTTTAGTAGGACAAAGCTTTTGTTGTGTGCGTGGGCCTTTCCTAGCTTTGTGGGATATGCTTATGAGGAGGTATTTGACTCGAAGGAGGAGTTAGATTATTTTTTGAAGAGGTTGGATGTATTGATATCATCTCCCACTGCAGCTAATTTTGAGTTGCAGTTACTGCAACTACATGATGACTTTAGCAGATATCCTGCAGTACTTGAGTACGTAACCCACACTTGGTTGAACCCGCATAAGGAAAAGCTTGTTGCAGCATGGACAAATGCTTTTATGCATTTTGGGGTCGCAAATTCGTTCAGGGAGGATACAAAACTTCAAGAAATATTAGGAAATCTGATTGAGAATTTAACTGTGCCTGTAAAGAATCAAATTCTTAAGTTGGAGGAATCATTTGAAGAGATACATGCTGGGCTTGAATTGCAGGAGACCAAAATCAATGCTTCACTGGAAAGCTGTTTAACAGTGAATGCAGATGAGTTTAGGCTTCCAGAATTCAAAGAGCTTTGTGGGGCTATTTCTCTTACTGCATTGGATCTGGTCCTGCAGCAGATGATGTTGGTCAATATAGTTGATGGTGATCTCTGCCATTGTGCCATACGCAATACCCATGGGTTACCATGTGCTCATGAGCTTGCAAAATACAAGAAAGGTGATAGACTTATTCCATTGGACTGTATCGATCCTTATTGGATGAAGCTTGACACGAAACCTTTAGGAAAGAATGCAGTGTGGTGTGGAAGAGAGTATGAAGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

570

Amino Acids

64.11

Weight (kDa)

6.56

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68140 AT1G68140 AT1G68140 AT1G68140
fragaria_vesca	FvH4_5g29920 FvH4_5g29920
malus_domestica	MD08G1226800.v1.1 MD15G1419100.v1.1
prunus_persica	Prupe.1G563900_v2.0.a1
pyrus_communis	pycom08g19780 pycom15g37200
rosa_chinensis	RchiOBHm_Chr7g0223751
rosa_laevigata	RLG00000001952
rosa_multiflora	Rmu_co8070298.1_g000001 Rmu_sc0008835.1_g000021
rosa_roxburghii	Rroxscaffold_3G00235400
rosa_rugosa	Rorug07G0219300 Rorug07G0219400 Rorug07G0219500 Rorug07G0219600
rosa_samantha	Rh7AG362200 Rh7BG353600 Rh7CG380800 Rh7DG357500
rosa_wichuraiana	Rw7G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
Acc16I	TGCGCA	1 cut(s)	72
AccII	CGCG	1 cut(s)	211
AciI	CCGC	2 cut(s)	94, 1184
AclWI	GGATC	3 cut(s)	150, 1494, 1628
AcsI	RAATTY	5 cut(s)	735, 1243, 1297, 1323, 1445
AcuI	CTGAAG	1 cut(s)	486
AcvI	CACGTG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	4 cut(s)	464, 596, 1152, 1160
AfiI	CCNNNNNNNGG	4 cut(s)	338, 339, 1173, 1189
AflII	CTTAAG	1 cut(s)	1328
AflIII	ACRYGT	1 cut(s)	697
AhlI	ACTAGT	2 cut(s)	149, 875
AjnI	CCWGG	1 cut(s)	458
Alw21I	GWGCWC	1 cut(s)	1579
Alw26I	GTCTC	1 cut(s)	1373
AlwI	GGATC	3 cut(s)	150, 1494, 1628
AlwNI	CAGNNNCTG	1 cut(s)	1114
AoxI	GGCC	1 cut(s)	984
ApoI	RAATTY	5 cut(s)	735, 1243, 1297, 1323, 1445
ArsI	GACNNNNNNTTYG	2 cut(s)	952, 984
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	984, 1492
AsuHPI	GGTGA	4 cut(s)	19, 151, 1541, 1616
AvaII	GGWCC	1 cut(s)	1492
BarI	GAAGNNNNNNTAC	2 cut(s)	484, 516
BbrPI	CACGTG	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	1579
BccI	CCATC	4 cut(s)	737, 862, 925, 1520
BceAI	ACGGC	1 cut(s)	923
BciT130I	CCWGG	1 cut(s)	460
BciVI	GTATCC	1 cut(s)	1252
BcoDI	GTCTC	1 cut(s)	1373
BcuI	ACTAGT	2 cut(s)	149, 875
BfaI	CTAG	6 cut(s)	150, 401, 489, 669, 876, 993
BfmI	CTRYAG	5 cut(s)	99, 112, 1089, 1146, 1496
BfrI	CTTAAG	1 cut(s)	1328
BfuI	GTATCC	1 cut(s)	1252
BmcAI	AGTACT	1 cut(s)	1152
Bme1390I	CCNGG	1 cut(s)	460
Bme18I	GGWCC	1 cut(s)	1492
BmgT120I	GGNCC	2 cut(s)	984, 1492
BmrFI	CCNGG	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	1175
Bsa29I	ATCGAT	1 cut(s)	1632
BsaAI	YACGTR	2 cut(s)	698, 1162
BsaBI	GATNNNNATC	1 cut(s)	1530
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	1373
BsaJI	CCNNGG	3 cut(s)	12, 333, 1561
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 339, 1173, 1189
Bse1I	ACTGG	2 cut(s)	144, 1404
Bse3DI	GCAATG	1 cut(s)	854
Bse8I	GATNNNNATC	1 cut(s)	1530
BseBI	CCWGG	1 cut(s)	460
BseCI	ATCGAT	1 cut(s)	1632
BseDI	CCNNGG	3 cut(s)	12, 333, 1561
BseGI	GGATG	4 cut(s)	22, 532, 1072, 1650
BseJI	GATNNNNATC	1 cut(s)	1530
BseLI	CCNNNNNNNGG	4 cut(s)	338, 339, 1173, 1189
BseMI	GCAATG	1 cut(s)	854
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	144, 1404
BseRI	GAGGAG	4 cut(s)	60, 70, 1031, 1052
BseYI	CCCAGC	1 cut(s)	1361
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	986
BshVI	ATCGAT	1 cut(s)	1632
BsiHKAI	GWGCWC	1 cut(s)	1579
BslI	CCNNNNNNNGG	4 cut(s)	338, 339, 1173, 1189
BsmAI	GTCTC	1 cut(s)	1373
BsmI	GAATGC	3 cut(s)	719, 1426, 1681
BsnI	GGCC	1 cut(s)	986
Bso31I	GGTCTC	1 cut(s)	1373
Bsp1286I	GDGCHC	1 cut(s)	1579
Bsp143I	GATC	4 cut(s)	142, 1486, 1531, 1633
Bsp19I	CCATGG	1 cut(s)	1561
BspACI	CCGC	2 cut(s)	94, 1184
BspANI	GGCC	1 cut(s)	986
BspCNI	CTCAG	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	1632
BspFNI	CGCG	1 cut(s)	211
BspHI	TCATGA	2 cut(s)	739, 1579
BspMAI	CTGCAG	5 cut(s)	103, 116, 1093, 1150, 1500
BspPI	GGATC	3 cut(s)	150, 1494, 1628
BspQI	GCTCTTC	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	1328
BspTNI	GGTCTC	1 cut(s)	1373
BsrDI	GCAATG	1 cut(s)	854
BsrI	ACTGG	2 cut(s)	144, 1404
BssECI	CCNNGG	3 cut(s)	12, 333, 1561
BssMI	GATC	4 cut(s)	142, 1486, 1531, 1633
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	2 cut(s)	333, 1561
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	3 cut(s)	1306, 1417, 1628
Bst6I	CTCTTC	5 cut(s)	47, 271, 1052, 1344, 1687
BstACI	GRCGYC	1 cut(s)	24
BstAFI	CTTAAG	1 cut(s)	1328
BstAPI	GCANNNNNTGC	1 cut(s)	1114
BstBAI	YACGTR	2 cut(s)	698, 1162
BstC8I	GCNNGC	3 cut(s)	96, 687, 1587
BstDEI	CTNAG	2 cut(s)	168, 643
BstDSI	CCRYGG	2 cut(s)	12, 1561
BstEII	GGTNACC	2 cut(s)	7, 1566
BstF5I	GGATG	4 cut(s)	22, 532, 1072, 1650
BstFNI	CGCG	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	145, 1489, 1534, 1636
BstMAI	GTCTC	1 cut(s)	1373
BstMBI	GATC	4 cut(s)	142, 1486, 1531, 1633
BstMWI	GCNNNNNNNGC	2 cut(s)	1114, 1372
BstNI	CCWGG	1 cut(s)	460
BstNSI	RCATGY	1 cut(s)	1361
BstPI	GGTNACC	2 cut(s)	7, 1566
BstSCI	CCNGG	1 cut(s)	458
BstSFI	CTRYAG	5 cut(s)	99, 112, 1089, 1146, 1496
BstSNI	TACGTA	1 cut(s)	1162
BstUI	CGCG	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	1486
BstYI	RGATCY	1 cut(s)	1486
Bsu15I	ATCGAT	1 cut(s)	1632
BsuI	GTATCC	1 cut(s)	1252
BsuRI	GGCC	1 cut(s)	986
BsuTUI	ATCGAT	1 cut(s)	1632
BtgI	CCRYGG	2 cut(s)	12, 1561
BtsCI	GGATG	4 cut(s)	22, 532, 1072, 1650
BtsI	GCAGTG	3 cut(s)	121, 1086, 1686
BtsIMutI	CAGTG	6 cut(s)	121, 137, 1086, 1397, 1422, 1686
Cac8I	GCNNGC	3 cut(s)	96, 687, 1587
CaiI	CAGNNNCTG	1 cut(s)	1114
CciI	TCATGA	2 cut(s)	739, 1579
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	984, 1492
ClaI	ATCGAT	1 cut(s)	1632
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	4 cut(s)	463, 595, 1151, 1159
CviAII	CATG	8 cut(s)	452, 740, 1124, 1209, 1358, 1562, 1572, 1580
CviQI	GTAC	4 cut(s)	463, 595, 1151, 1159
DdeI	CTNAG	2 cut(s)	168, 643
DpnI	GATC	4 cut(s)	144, 1488, 1533, 1635
DpnII	GATC	4 cut(s)	142, 1486, 1531, 1633
DraI	TTTAAA	1 cut(s)	676
Eam1104I	CTCTTC	5 cut(s)	47, 271, 1052, 1344, 1687
EarI	CTCTTC	5 cut(s)	47, 271, 1052, 1344, 1687
Eco105I	TACGTA	1 cut(s)	1162
Eco130I	CCWWGG	2 cut(s)	333, 1561
Eco31I	GGTCTC	1 cut(s)	1373
Eco32I	GATATC	2 cut(s)	1077, 1142
Eco47I	GGWCC	1 cut(s)	1492
Eco57I	CTGAAG	1 cut(s)	486
Eco72I	CACGTG	1 cut(s)	698
Eco91I	GGTNACC	2 cut(s)	7, 1566
EcoO65I	GGTNACC	2 cut(s)	7, 1566
EcoRI	GAATTC	2 cut(s)	735, 1445
EcoRII	CCWGG	1 cut(s)	458
EcoRV	GATATC	2 cut(s)	1077, 1142
EcoT14I	CCWWGG	2 cut(s)	333, 1561
EcoT22I	ATGCAT	2 cut(s)	719, 1230
ErhI	CCWWGG	2 cut(s)	333, 1561
FaeI	CATG	8 cut(s)	455, 743, 1127, 1212, 1361, 1565, 1575, 1583
FatI	CATG	8 cut(s)	451, 739, 1123, 1208, 1357, 1561, 1571, 1579
FauI	CCCGC	2 cut(s)	87, 1191
FokI	GGATG	4 cut(s)	29, 539, 1079, 1657
FspBI	CTAG	6 cut(s)	150, 401, 489, 669, 876, 993
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	1 cut(s)	72
GsaI	CCCAGC	1 cut(s)	1365
HaeIII	GGCC	1 cut(s)	986
HgaI	GACGC	1 cut(s)	777
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	8 cut(s)	455, 743, 1127, 1212, 1361, 1565, 1575, 1583
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HindIII	AAGCTT	3 cut(s)	965, 1196, 1649
HinfI	GANTC	4 cut(s)	441, 1028, 1318, 1340
HphI	GGTGA	4 cut(s)	19, 151, 1541, 1616
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	256, 505, 562, 1290
Hpy188III	TCNNGA	6 cut(s)	178, 655, 740, 1271, 1442, 1580
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	2 cut(s)	29, 43
HpyAV	CCTTC	6 cut(s)	332, 421, 431, 510, 517, 1027
HpyCH4III	ACNGT	3 cut(s)	1306, 1417, 1628
HpyCH4IV	ACGT	4 cut(s)	24, 258, 697, 1161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1114, 1372
HpyF3I	CTNAG	2 cut(s)	168, 643
HpySE526I	ACGT	4 cut(s)	24, 258, 697, 1161
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	8 cut(s)	455, 743, 1127, 1212, 1361, 1565, 1575, 1583
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	4 cut(s)	142, 1486, 1531, 1633
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	47, 618
MaeI	CTAG	6 cut(s)	150, 401, 489, 669, 876, 993
MaeII	ACGT	4 cut(s)	24, 258, 697, 1161
MaeIII	GTNAC	6 cut(s)	7, 241, 871, 1110, 1162, 1566
MalI	GATC	4 cut(s)	144, 1488, 1533, 1635
MboI	GATC	4 cut(s)	142, 1486, 1531, 1633
MboII	GAAGA	7 cut(s)	64, 288, 355, 807, 1069, 1361, 1704
MflI	RGATCY	1 cut(s)	1486
MhlI	GDGCHC	1 cut(s)	1579
MlyI	GAGTC	1 cut(s)	1022
MmeI	TCCRAC	2 cut(s)	1044, 1314
Mph1103I	ATGCAT	2 cut(s)	719, 1230
MroXI	GAANNNNTTC	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	450
MspCI	CTTAAG	1 cut(s)	1328
MspR9I	CCNGG	1 cut(s)	460
Mva1269I	GAATGC	3 cut(s)	719, 1426, 1681
MvaI	CCWGG	1 cut(s)	460
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	1114, 1372
NcoI	CCATGG	1 cut(s)	1561
NdeII	GATC	4 cut(s)	142, 1486, 1531, 1633
NlaIII	CATG	8 cut(s)	455, 743, 1127, 1212, 1361, 1565, 1575, 1583
NmuCI	GTSAC	2 cut(s)	7, 241
NsbI	TGCGCA	1 cut(s)	72
NsiI	ATGCAT	2 cut(s)	719, 1230
NspI	RCATGY	1 cut(s)	1361
PagI	TCATGA	2 cut(s)	739, 1579
PciSI	GCTCTTC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	3 cut(s)	719, 1426, 1681
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	441, 1318, 1340
PleI	GAGTC	1 cut(s)	1022
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	1022
Ppu21I	YACGTR	2 cut(s)	698, 1162
Psp6I	CCWGG	1 cut(s)	458
PspCI	CACGTG	1 cut(s)	698
PspEI	GGTNACC	2 cut(s)	7, 1566
PspFI	CCCAGC	1 cut(s)	1361
PspGI	CCWGG	1 cut(s)	458
PspPI	GGNCC	2 cut(s)	984, 1492
PstI	CTGCAG	5 cut(s)	103, 116, 1093, 1150, 1500
PstNI	CAGNNNCTG	1 cut(s)	1114
PsuI	RGATCY	1 cut(s)	1486
RsaI	GTAC	4 cut(s)	464, 596, 1152, 1160
RsaNI	GTAC	4 cut(s)	463, 595, 1151, 1159
RseI	CAYNNNNRTG	1 cut(s)	450
SapI	GCTCTTC	1 cut(s)	271
Sau3AI	GATC	4 cut(s)	142, 1486, 1531, 1633
Sau96I	GGNCC	2 cut(s)	984, 1492
ScaI	AGTACT	1 cut(s)	1152
SchI	GAGTC	1 cut(s)	1022
ScrFI	CCNGG	1 cut(s)	460
SduI	GDGCHC	1 cut(s)	1579
SfcI	CTRYAG	5 cut(s)	99, 112, 1089, 1146, 1496
SinI	GGWCC	1 cut(s)	1492
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	1154, 1328
SmoI	CTYRAG	2 cut(s)	1154, 1328
SnaBI	TACGTA	1 cut(s)	1162
SpeI	ACTAGT	2 cut(s)	149, 875
SsiI	CCGC	2 cut(s)	94, 1184
SspI	AATATT	2 cut(s)	191, 1278
SspMI	CTAG	6 cut(s)	150, 401, 489, 669, 876, 993
StyD4I	CCNGG	1 cut(s)	458
StyI	CCWWGG	2 cut(s)	333, 1561
TaaI	ACNGT	3 cut(s)	1306, 1417, 1628
TaiI	ACGT	4 cut(s)	27, 261, 700, 1164
TaqI	TCGA	3 cut(s)	224, 1031, 1632
TatI	WGTACW	2 cut(s)	594, 1150
TfiI	GAWTC	3 cut(s)	441, 1318, 1340
TscAI	CASTG	6 cut(s)	121, 144, 1093, 1404, 1422, 1686
TseFI	GTSAC	2 cut(s)	7, 241
Tsp45I	GTSAC	2 cut(s)	7, 241
TspDTI	ATGAA	2 cut(s)	728, 1661
TspGWI	ACGGA	2 cut(s)	29, 932
TspRI	CASTG	6 cut(s)	121, 144, 1093, 1404, 1422, 1686
Vha464I	CTTAAG	1 cut(s)	1328
VpaK11BI	GGWCC	1 cut(s)	1492
XapI	RAATTY	5 cut(s)	735, 1243, 1297, 1323, 1445
XceI	RCATGY	1 cut(s)	1361
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	6 cut(s)	150, 401, 489, 669, 876, 993
ZraI	GACGTC	1 cut(s)	25
ZrmI	AGTACT	1 cut(s)	1152
Zsp2I	ATGCAT	2 cut(s)	719, 1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.