Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007434

Physical Location & Seq

Genomic Coordinates Reverse (-)

19690248 .. 19692630

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0219300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTTGGACCAGTTGAGCTCTGTTTTGTTAATAGAAATGTGTTCACCACCAAGTGCTATGGAAAAAGGCGGGACAAGAAAGAGGCCACGACCTTCCAACCCGTTGCACAACCAATTAAGATCTTTTGCTCGCAGGAGGTTTAACTCTGGCACGGGTCCAACCAGCCCCACAAAAGCTTTCCATGGAGGGCCTGGCCAGGTACCTTTTCAGGCTGTATCACCACATGGGAAAGCTAAGAATGCTCGTACAGAAGAAAAAGATCATGAGTTCCAAAAGAGCTCCCCTTTGCACCCACAGCCCAGTGAAACTGAGGAGACCTCTGAATATTTGAGGGATTTCCAGGAAATCAGTGACAAGCATAAGTCCTTGCCAGTTGAGCTCTGTCAAAAATCTGTCTCCATGAACCTGAATGCAGTCTACTGTCAGCATGCCGCAATGGAATATCTAGAAAGAGTACATTATGAGTTGAGTGGGCTTAGGATTGAGAAAAAGATGCTTCAAGATAGCAATTTGAAGTTGGAAAATGATCTTTTGACCGAGAAATCTGAGGCGCGTGAGGCAAAGGCTCAAATTGAATTGGAAATGATAAAGGAGAGAAAAAGAGCTGAAGAGGAGAAGGTCCGAGCGGACACTCTTGTGGCTCAAATTGAAAAACTGTTTGTAGAGCTTCTAAAAGCCAAGGCAGCCCTAGAAGAGGAGAAAGAAAAAGTCTCTAAGCTGTCTGAAGGAATACCAGCTCTTGAGGTTGCTTCTGTTCAAGCTTTCAAGGAGTCGAAGGAGTTCACCAACTTAATGTTTGAGCAATTTGCCAGAGGTTATGATGATTGCAGAACAGTGATAGAGGAACACAATTTTCGGCTAGATCTGAGCTGGATGGACGTGGAAGATGTCACAAATGAGAGAATTCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

304

Amino Acids

34.75

Weight (kDa)

5.83

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68140 AT1G68140 AT1G68140 AT1G68140
fragaria_vesca	FvH4_5g29920 FvH4_5g29920
malus_domestica	MD08G1226800.v1.1 MD15G1419100.v1.1
prunus_persica	Prupe.1G563900_v2.0.a1
pyrus_communis	pycom08g19780 pycom15g37200
rosa_chinensis	RchiOBHm_Chr7g0223751
rosa_laevigata	RLG00000001952
rosa_multiflora	Rmu_co8070298.1_g000001 Rmu_sc0008835.1_g000021
rosa_roxburghii	Rroxscaffold_3G00235400
rosa_rugosa	Rorug07G0219300 Rorug07G0219400 Rorug07G0219500 Rorug07G0219600
rosa_samantha	Rh7AG362200 Rh7BG353600 Rh7CG380800 Rh7DG357500
rosa_wichuraiana	Rw7G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	199
AccBSI	CCGCTC	1 cut(s)	626
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	1 cut(s)	553
AciI	CCGC	3 cut(s)	69, 432, 626
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	903
AcuI	CTGAAG	2 cut(s)	627, 744
AdeI	CACNNNGTG	1 cut(s)	53
AfaI	GTAC	3 cut(s)	201, 247, 456
AfiI	CCNNNNNNNGG	1 cut(s)	694
AgsI	TTSAA	6 cut(s)	500, 514, 575, 650, 758, 766
AjiI	CACGTC	1 cut(s)	880
AjnI	CCWGG	3 cut(s)	190, 195, 339
AleI	CACNNNNGTG	1 cut(s)	635
Alw21I	GWGCWC	3 cut(s)	20, 281, 381
Alw26I	GTCTC	3 cut(s)	308, 400, 715
AoxI	GGCC	3 cut(s)	83, 188, 193
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	1 cut(s)	903
Asp700I	GAANNNNTTC	2 cut(s)	779, 907
Asp718I	GGTACC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	4 cut(s)	7, 155, 188, 619
AsuHPI	GGTGA	3 cut(s)	36, 210, 775
AvaII	GGWCC	3 cut(s)	7, 155, 619
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	3 cut(s)	20, 281, 381
Bbv12I	GWGCWC	3 cut(s)	20, 281, 381
BbvI	GCAGC	1 cut(s)	695
BccI	CCATC	1 cut(s)	868
BciT130I	CCWGG	3 cut(s)	192, 197, 341
BcoDI	GTCTC	3 cut(s)	308, 400, 715
BfaI	CTAG	3 cut(s)	446, 689, 860
BglII	AGATCT	2 cut(s)	119, 862
BisI	GCNGC	2 cut(s)	432, 684
BlsI	GCNGC	2 cut(s)	433, 685
Bme1390I	CCNGG	3 cut(s)	192, 197, 341
Bme18I	GGWCC	3 cut(s)	7, 155, 619
BmgBI	CACGTC	1 cut(s)	880
BmgT120I	GGNCC	4 cut(s)	7, 155, 188, 619
BmiI	GGNNCC	2 cut(s)	156, 201
BmrFI	CCNGG	3 cut(s)	192, 197, 341
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	483
BmuI	ACTGGG	1 cut(s)	294
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
Bpu10I	CCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	181, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	3 cut(s)	10, 300, 371
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	3 cut(s)	192, 197, 341
BseDI	CCNNGG	2 cut(s)	181, 678
BseGI	GGATG	1 cut(s)	879
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	3 cut(s)	300, 537, 857
BseNI	ACTGG	3 cut(s)	10, 300, 371
BseRI	GAGGAG	3 cut(s)	326, 626, 710
BseXI	GCAGC	1 cut(s)	695
Bsh1236I	CGCG	1 cut(s)	553
BshFI	GGCC	3 cut(s)	85, 190, 195
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	3 cut(s)	20, 281, 381
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmAI	GTCTC	3 cut(s)	308, 400, 715
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	2 cut(s)	244, 415
BsnI	GGCC	3 cut(s)	85, 190, 195
Bso31I	GGTCTC	1 cut(s)	308
Bsp1286I	GDGCHC	3 cut(s)	20, 281, 381
Bsp143I	GATC	4 cut(s)	119, 259, 526, 862
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	3 cut(s)	69, 432, 626
BspANI	GGCC	3 cut(s)	85, 190, 195
BspCNI	CTCAG	3 cut(s)	301, 538, 858
BspFNI	CGCG	1 cut(s)	553
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	156, 201
BspT107I	GGYRCC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	3 cut(s)	10, 300, 371
BssECI	CCNNGG	2 cut(s)	181, 678
BssMI	GATC	4 cut(s)	119, 259, 526, 862
BssT1I	CCWWGG	2 cut(s)	181, 678
Bst2UI	CCWGG	3 cut(s)	192, 197, 341
Bst4CI	ACNGT	3 cut(s)	422, 657, 835
Bst6I	CTCTTC	2 cut(s)	603, 687
BstC8I	GCNNGC	2 cut(s)	130, 429
BstDEI	CTNAG	6 cut(s)	234, 309, 476, 546, 714, 866
BstDSI	CCRYGG	1 cut(s)	181
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	1 cut(s)	879
BstFNI	CGCG	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	4 cut(s)	122, 262, 529, 865
BstMAI	GTCTC	3 cut(s)	308, 400, 715
BstMBI	GATC	4 cut(s)	119, 259, 526, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 295, 376, 557, 683
BstNI	CCWGG	3 cut(s)	192, 197, 341
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	3 cut(s)	190, 195, 339
BstUI	CGCG	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	695
BstX2I	RGATCY	2 cut(s)	119, 862
BstYI	RGATCY	2 cut(s)	119, 862
BsuRI	GGCC	3 cut(s)	85, 190, 195
BtgI	CCRYGG	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	880
BtsCI	GGATG	1 cut(s)	879
BtsIMutI	CAGTG	3 cut(s)	307, 355, 840
Cac8I	GCNNGC	2 cut(s)	130, 429
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	553
Cfr13I	GGNCC	4 cut(s)	7, 155, 188, 619
Csp6I	GTAC	3 cut(s)	200, 246, 455
CviAII	CATG	5 cut(s)	182, 224, 263, 400, 428
CviQI	GTAC	3 cut(s)	200, 246, 455
DdeI	CTNAG	6 cut(s)	234, 309, 476, 546, 714, 866
DpnI	GATC	4 cut(s)	121, 261, 528, 864
DpnII	GATC	4 cut(s)	119, 259, 526, 862
DraIII	CACNNNGTG	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	603, 687
EarI	CTCTTC	2 cut(s)	603, 687
Ecl136II	GAGCTC	3 cut(s)	18, 279, 379
Eco130I	CCWWGG	2 cut(s)	181, 678
Eco24I	GRGCYC	3 cut(s)	20, 281, 381
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	3 cut(s)	7, 155, 619
Eco53kI	GAGCTC	3 cut(s)	18, 279, 379
Eco57I	CTGAAG	2 cut(s)	627, 744
EcoICRI	GAGCTC	3 cut(s)	18, 279, 379
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	903
EcoRII	CCWGG	3 cut(s)	190, 195, 339
EcoT14I	CCWWGG	2 cut(s)	181, 678
EcoT38I	GRGCYC	3 cut(s)	20, 281, 381
ErhI	CCWWGG	2 cut(s)	181, 678
FaeI	CATG	5 cut(s)	185, 227, 266, 403, 431
FaiI	YATR	9 cut(s)	59, 183, 225, 264, 360, 401, 429, 462, 819
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	5 cut(s)	181, 223, 262, 399, 427
FauI	CCCGC	1 cut(s)	62
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	432, 684
FokI	GGATG	1 cut(s)	886
FriOI	GRGCYC	3 cut(s)	20, 281, 381
Fsp4HI	GCNGC	2 cut(s)	432, 684
FspBI	CTAG	3 cut(s)	446, 689, 860
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	2 cut(s)	432, 684
HaeIII	GGCC	3 cut(s)	85, 190, 195
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	5 cut(s)	185, 227, 266, 403, 431
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HindIII	AAGCTT	2 cut(s)	174, 759
HinfI	GANTC	1 cut(s)	770
HphI	GGTGA	3 cut(s)	36, 210, 775
Hpy166II	GTNNAC	3 cut(s)	44, 418, 783
Hpy188I	TCNGA	5 cut(s)	322, 547, 623, 724, 867
Hpy188III	TCNNGA	5 cut(s)	263, 446, 500, 740, 912
Hpy8I	GTNNAC	3 cut(s)	44, 418, 783
HpyAV	CCTTC	4 cut(s)	102, 610, 719, 769
HpyCH4III	ACNGT	3 cut(s)	422, 657, 835
HpyCH4IV	ACGT	1 cut(s)	879
HpyCH4V	TGCA	4 cut(s)	106, 289, 413, 828
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 295, 376, 557, 683
HpyF3I	CTNAG	6 cut(s)	234, 309, 476, 546, 714, 866
HpySE526I	ACGT	1 cut(s)	879
Hsp92II	CATG	5 cut(s)	185, 227, 266, 403, 431
HspAI	GCGC	1 cut(s)	551
KpnI	GGTACC	1 cut(s)	203
Kzo9I	GATC	4 cut(s)	119, 259, 526, 862
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	1 cut(s)	695
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	3 cut(s)	446, 689, 860
MaeII	ACGT	1 cut(s)	879
MaeIII	GTNAC	2 cut(s)	350, 889
MalI	GATC	4 cut(s)	121, 261, 528, 864
MbiI	CCGCTC	1 cut(s)	626
MboI	GATC	4 cut(s)	119, 259, 526, 862
MboII	GAAGA	4 cut(s)	263, 620, 704, 896
MflI	RGATCY	2 cut(s)	119, 862
MhlI	GDGCHC	3 cut(s)	20, 281, 381
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	8 cut(s)	113, 508, 570, 575, 645, 803, 850, 903
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	779
MmeI	TCCRAC	3 cut(s)	120, 182, 498
Mox20I	TGGCCA	1 cut(s)	195
MroXI	GAANNNNTTC	2 cut(s)	779, 907
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	4 cut(s)	29, 116, 141, 791
MslI	CAYNNNNRTG	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	195
MspR9I	CCNGG	3 cut(s)	192, 197, 341
Mva1269I	GAATGC	2 cut(s)	244, 415
MvaI	CCWGG	3 cut(s)	192, 197, 341
MvnI	CGCG	1 cut(s)	553
MwoI	GCNNNNNNNGC	5 cut(s)	239, 295, 376, 557, 683
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	4 cut(s)	119, 259, 526, 862
NlaIII	CATG	5 cut(s)	185, 227, 266, 403, 431
NlaIV	GGNNCC	2 cut(s)	156, 201
NmuCI	GTSAC	2 cut(s)	350, 889
NspI	RCATGY	1 cut(s)	431
OliI	CACNNNNGTG	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	431
PagI	TCATGA	1 cut(s)	262
PctI	GAATGC	2 cut(s)	244, 415
PdmI	GAANNNNTTC	2 cut(s)	779, 907
PfoI	TCCNGGA	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	433, 685
PleI	GAGTC	1 cut(s)	778
PpsI	GAGTC	1 cut(s)	778
Psp124BI	GAGCTC	3 cut(s)	20, 281, 381
Psp6I	CCWGG	3 cut(s)	190, 195, 339
PspGI	CCWGG	3 cut(s)	190, 195, 339
PspN4I	GGNNCC	2 cut(s)	156, 201
PspPI	GGNCC	4 cut(s)	7, 155, 188, 619
PsuI	RGATCY	2 cut(s)	119, 862
RsaI	GTAC	3 cut(s)	201, 247, 456
RsaNI	GTAC	3 cut(s)	200, 246, 455
RseI	CAYNNNNRTG	1 cut(s)	635
SacI	GAGCTC	3 cut(s)	20, 281, 381
SaqAI	TTAA	4 cut(s)	29, 116, 141, 791
SatI	GCNGC	2 cut(s)	432, 684
Sau3AI	GATC	4 cut(s)	119, 259, 526, 862
Sau96I	GGNCC	4 cut(s)	7, 155, 188, 619
SchI	GAGTC	1 cut(s)	779
ScrFI	CCNGG	3 cut(s)	192, 197, 341
SduI	GDGCHC	3 cut(s)	20, 281, 381
SfaNI	GCATC	1 cut(s)	483
SinI	GGWCC	3 cut(s)	7, 155, 619
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	8 cut(s)	113, 508, 570, 575, 645, 803, 850, 903
SsiI	CCGC	3 cut(s)	69, 432, 626
SspI	AATATT	1 cut(s)	326
SspMI	CTAG	3 cut(s)	446, 689, 860
SstI	GAGCTC	3 cut(s)	20, 281, 381
StyD4I	CCNGG	3 cut(s)	190, 195, 339
StyI	CCWWGG	2 cut(s)	181, 678
TaaI	ACNGT	3 cut(s)	422, 657, 835
TaiI	ACGT	1 cut(s)	882
TaqI	TCGA	1 cut(s)	773
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	8 cut(s)	113, 508, 570, 575, 645, 803, 850, 903
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	1 cut(s)	434
Tru1I	TTAA	4 cut(s)	29, 116, 141, 791
Tru9I	TTAA	4 cut(s)	29, 116, 141, 791
TscAI	CASTG	3 cut(s)	307, 355, 840
TseFI	GTSAC	2 cut(s)	350, 889
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	2 cut(s)	350, 889
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	3 cut(s)	307, 355, 840
VpaK11BI	GGWCC	3 cut(s)	7, 155, 619
XagI	CCTNNNNNAGG	1 cut(s)	692
XapI	RAATTY	1 cut(s)	903
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	2 cut(s)	779, 907
XspI	CTAG	3 cut(s)	446, 689, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.