Rorug07G0219500

Protein of unknown function (DUF1644)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
19719158 .. 19719701
544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0219500.1

Sequence Viewer

Length: 411 bp
ATGACAAAATTTGGAATTGCTCTCAATTCATCACCAGTCCTTCAAGGTGCCATTCCAAGTTCATTGCAAAGTGGCATTGGCATTATGAATGATTCATCAAGCCAAAATTCAGTCGGAAATATCATGCAGATGGCAACAAAACCACCAGACTATGGAACTCAAGGCTTGCCTGGATATGGAAATAAGGGTACAGGTTCAACTTATGATAATTTTCCATCAACAAGCTCTCCAGTTGATACACCTTTTGGCAGTCGAACGGAGAAGGTTCTCAGCAGTTTTTTACAGAGTCCAGTTTTGAAGGGAGAGGAAAGTGAACTAAGTGAAGTGGCTGGCCGCTTGAGGTCGGAGAATAAAATCCTTCAAATTGTAGTAACTATTATTGACTGTGGTCTCCAATTGATTCCGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

14.33

Weight (kDa)

4.96

Isoelectric Point (pI)

70.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 1 cut(s) 152
AciI CCGC 1 cut(s) 334
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 2 cut(s) 8, 106
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 2 cut(s) 152, 176
AgsI TTSAA 4 cut(s) 44, 198, 298, 362
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 395
AoxI GGCC 1 cut(s) 331
ApoI RAATTY 2 cut(s) 8, 106
AsuHPI GGTGA 1 cut(s) 24
BanI GGYRCC 1 cut(s) 47
BccI CCATC 2 cut(s) 124, 223
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 395
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
Bme1390I CCNGG 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 171
BoxI GACNNNNGTC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 144, 358
BsaI GGTCTC 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 176
Bse1I ACTGG 3 cut(s) 35, 230, 290
Bse3DI GCAATG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 152, 176
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 3 cut(s) 35, 230, 290
BshFI GGCC 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 152, 176
BsmAI GTCTC 1 cut(s) 395
BsnI GGCC 1 cut(s) 333
Bso31I GGTCTC 1 cut(s) 395
BspACI CCGC 1 cut(s) 334
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 62
BsrI ACTGG 3 cut(s) 35, 230, 290
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 386
BstC8I GCNNGC 2 cut(s) 167, 331
BstDEI CTNAG 2 cut(s) 269, 317
BstMAI GTCTC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 171
BstPAI GACNNNNGTC 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 169
BsuRI GGCC 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 167, 331
Csp6I GTAC 1 cut(s) 189
CviAII CATG 1 cut(s) 124
CviJI RGCY 5 cut(s) 102, 165, 225, 329, 333
CviKI_1 RGCY 5 cut(s) 102, 165, 225, 329, 333
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 269, 317
EaeI YGGCCR 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 127
FaiI YATR 5 cut(s) 86, 125, 153, 177, 204
FatI CATG 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 334
GluI GCNGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 333
Hin1II CATG 1 cut(s) 127
HinfI GANTC 3 cut(s) 92, 286, 400
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 2 cut(s) 116, 346
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 4 cut(s) 50, 256, 292, 368
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 2 cut(s) 67, 127
HpyF3I CTNAG 2 cut(s) 269, 317
Hsp92II CATG 1 cut(s) 127
LpnPI CCDG 8 cut(s) 48, 156, 159, 177, 183, 243, 303, 315
MaeIII GTNAC 1 cut(s) 370
MfeI CAATTG 1 cut(s) 395
MluCI AATT 7 cut(s) 8, 15, 25, 106, 208, 363, 395
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 2 cut(s) 94, 324
MnlI CCTC 2 cut(s) 298, 333
MslI CAYNNNNRTG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 171
MunI CAATTG 1 cut(s) 395
MvaI CCWGG 1 cut(s) 171
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 92, 400
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 335
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
PshAI GACNNNNGTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 49
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 128
SatI GCNGC 1 cut(s) 334
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 171
SetI ASST 6 cut(s) 49, 196, 227, 244, 267, 344
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 159, 337
SmoI CTYRAG 2 cut(s) 159, 337
Sse9I AATT 7 cut(s) 8, 15, 25, 106, 208, 363, 395
SsiI CCGC 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 1 cut(s) 253
TasI AATT 7 cut(s) 8, 15, 25, 106, 208, 363, 395
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 2 cut(s) 92, 400
TspDTI ATGAA 4 cut(s) 18, 51, 84, 101
TspGWI ACGGA 2 cut(s) 272, 393
Van91I CCANNNNNTGG 1 cut(s) 152
XapI RAATTY 2 cut(s) 8, 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.