AT1G69210

RimP N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010343
Physical Location & Seq
Reverse (-)
26018438 .. 26020058
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69210.1

Sequence Viewer

Length: 918 bp
ATGGCGAGATACCAAAATCTCTTTGTAGCTGCTTTGTTCCGAGCTTCTCGCCGTTTTACCAAACCGGCGACTTGTATCTCCGTTAGAACTTTTTCTTCTTCCTTACTACTTCCAAAGACGACGACACGTCTTACTCTTCCTCGCTATTTTCCTTTCTCTTCTTCGATCTCTACGTTTTCTTCTTCGTCTTCTTCTCCTTCTCCTTCAGCTCGACCGCCAAAAACCGCCGGTAGTAATGGCGACGAAGAAGACACTTTTGAATATAAAGCAACTGATGATGTTGAGGTCATAGAAGATTGGGAAGAAGACGAAGATGAGGATGTTGAATCACAGCTTGGTGATGGAGGAGATGGTGGTGGAATTGTTCTTAAAGGTGTAGCATGGGGTGAAAGAGTTCTCTCTATAGCTGCACAAGTTTTGAAGCAGTCTGAGAAAGACTTGGAATTGTTTGCTTTCAAAACTTCACCGCGTGGATATATATACGTCAGACTAGACAAACTCTCCACTGAATATGGATGTCCTACCATGGATGAGCTTGAGGAATTTAGTCGAGAATTTAAGAAAAGACTAGATGATGCTGGGGCTGAAAAAGTAATCCCAGAGGATCTAGCCCTTGAGGTGTCATCTCCAGGAGCGGAGAGGCTACTGAGAGTCCCAGAGGACTTGCCCCGATTCAAGGATATGCCAATGACAGTAAGCTATGTAGAAGAAACAAACTCGAGGAAAGCAGTAAAGAGTGGAGTGTTCCTCTTGGAGTCTATAGATGCAGAATCAGATAACTGTGTCTGGAAATTAGCAGATGTAAGGGAGAACAGAGATCCCGAAAGCAAAGGCAGACCGTTAAGCCGGAAACAAAAGGACTTGAGAATCACACTGCCTTTCGCAGATCACAAGAAGATAAATCTCTACTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

305

Amino Acids

34.22

Weight (kDa)

4.95

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RimP_N PF02576 145 - 213 5.3e-07 RimP N-terminal domain
DUF7912 PF25498 215 - 303 7.3e-38 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 635
AccII CGCG 1 cut(s) 469
AciI CCGC 4 cut(s) 215, 225, 467, 635
AclWI GGATC 2 cut(s) 612, 812
AcsI RAATTY 2 cut(s) 542, 554
AcuI CTGAAG 1 cut(s) 189
AdeI CACNNNGTG 1 cut(s) 470
AfiI CCNNNNNNNGG 1 cut(s) 676
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 5 cut(s) 260, 326, 421, 457, 676
AhdI GACNNNNNGTC 1 cut(s) 126
AjiI CACGTC 1 cut(s) 128
AjnI CCWGG 1 cut(s) 628
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 7 cut(s) 29, 44, 209, 334, 407, 535, 699
AluI AGCT 7 cut(s) 29, 44, 209, 334, 407, 535, 699
AlwI GGATC 2 cut(s) 612, 812
Ama87I CYCGRG 1 cut(s) 718
ApeKI GCWGC 2 cut(s) 29, 407
ApoI RAATTY 2 cut(s) 542, 554
Asp700I GAANNNNTTC 2 cut(s) 91, 393
AsuHPI GGTGA 3 cut(s) 350, 398, 456
AvaI CYCGRG 1 cut(s) 718
BbsI GAAGAC 3 cut(s) 180, 255, 312
BbvI GCAGC 2 cut(s) 16, 394
BccI CCATC 2 cut(s) 335, 344
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 630
BfaI CTAG 3 cut(s) 491, 569, 608
BfmI CTRYAG 2 cut(s) 402, 759
BisI GCNGC 2 cut(s) 30, 408
BlsI GCNGC 2 cut(s) 31, 409
Bme1390I CCNGG 1 cut(s) 630
BmeRI GACNNNNNGTC 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 718
BmgBI CACGTC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 2 cut(s) 565, 754
BpiI GAAGAC 3 cut(s) 180, 255, 312
BplI GAGNNNNNCTC 2 cut(s) 732, 764
BpmI CTGGAG 1 cut(s) 612
BpuEI CTTGAG 3 cut(s) 557, 635, 883
BsaJI CCNNGG 1 cut(s) 525
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 676
Bse118I RCCGGY 2 cut(s) 64, 227
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 3 cut(s) 325, 521, 535
BseLI CCNNNNNNNGG 1 cut(s) 676
BseMII CTCAG 2 cut(s) 420, 638
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 2 cut(s) 16, 394
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 469
Bsh1285I CGRYCG 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 718
BsiSI CCGG 3 cut(s) 65, 228, 847
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 676
BsmFI GGGAC 1 cut(s) 638
BsoBI CYCGRG 1 cut(s) 718
Bsp143I GATC 4 cut(s) 165, 604, 817, 886
Bsp19I CCATGG 1 cut(s) 525
BspACI CCGC 4 cut(s) 215, 225, 467, 635
BspCNI CTCAG 2 cut(s) 421, 639
BspFNI CGCG 1 cut(s) 469
BspPI GGATC 2 cut(s) 612, 812
BsrBI CCGCTC 1 cut(s) 635
BsrFI RCCGGY 2 cut(s) 64, 227
BssAI RCCGGY 2 cut(s) 64, 227
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 4 cut(s) 165, 604, 817, 886
BssT1I CCWWGG 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 3 cut(s) 694, 782, 840
Bst6I CTCTTC 2 cut(s) 141, 163
BstDEI CTNAG 2 cut(s) 429, 647
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 3 cut(s) 325, 521, 535
BstFNI CGCG 1 cut(s) 469
BstKTI GATC 4 cut(s) 168, 607, 820, 889
BstMBI GATC 4 cut(s) 165, 604, 817, 886
BstMCI CGRYCG 1 cut(s) 215
BstNI CCWGG 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 628
BstSFI CTRYAG 2 cut(s) 402, 759
BstUI CGCG 1 cut(s) 469
BstV1I GCAGC 2 cut(s) 16, 394
BstV2I GAAGAC 3 cut(s) 180, 255, 312
BstX2I RGATCY 2 cut(s) 604, 817
BstYI RGATCY 2 cut(s) 604, 817
BtgI CCRYGG 1 cut(s) 525
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 3 cut(s) 325, 521, 535
BtsI GCAGTG 1 cut(s) 872
BtsIMutI CAGTG 2 cut(s) 504, 872
Cfr10I RCCGGY 2 cut(s) 64, 227
CviAII CATG 2 cut(s) 381, 526
DdeI CTNAG 2 cut(s) 429, 647
DpnI GATC 4 cut(s) 167, 606, 819, 888
DpnII GATC 4 cut(s) 165, 604, 817, 886
DraIII CACNNNGTG 1 cut(s) 470
DriI GACNNNNNGTC 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 141, 163
Eam1105I GACNNNNNGTC 1 cut(s) 126
EarI CTCTTC 2 cut(s) 141, 163
Eco130I CCWWGG 1 cut(s) 525
Eco57I CTGAAG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 2 cut(s) 384, 529
FaqI GGGAC 1 cut(s) 638
FatI CATG 2 cut(s) 380, 525
Fnu4HI GCNGC 2 cut(s) 30, 408
FokI GGATG 3 cut(s) 332, 528, 542
Fsp4HI GCNGC 2 cut(s) 30, 408
FspBI CTAG 3 cut(s) 491, 569, 608
GluI GCNGC 2 cut(s) 30, 408
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 1 cut(s) 612
HapII CCGG 3 cut(s) 65, 228, 847
Hin1II CATG 2 cut(s) 384, 529
HinfI GANTC 6 cut(s) 326, 651, 672, 755, 770, 867
HpaII CCGG 3 cut(s) 65, 228, 847
HphI GGTGA 3 cut(s) 350, 398, 456
Hpy188I TCNGA 4 cut(s) 41, 430, 488, 775
Hpy188III TCNNGA 3 cut(s) 551, 787, 821
Hpy99I CGWCG 2 cut(s) 124, 245
HpyAV CCTTC 2 cut(s) 207, 213
HpyCH4III ACNGT 3 cut(s) 694, 782, 840
HpyCH4IV ACGT 3 cut(s) 127, 173, 483
HpyCH4V TGCA 2 cut(s) 410, 767
HpyF3I CTNAG 2 cut(s) 429, 647
HpySE526I ACGT 3 cut(s) 127, 173, 483
Hsp92II CATG 2 cut(s) 384, 529
Kzo9I GATC 4 cut(s) 165, 604, 817, 886
LmnI GCTCC 1 cut(s) 632
LpnPI CCDG 9 cut(s) 78, 241, 564, 612, 615, 642, 669, 772, 860
Lsp1109I GCAGC 2 cut(s) 16, 394
LweI GCATC 2 cut(s) 565, 754
MaeI CTAG 3 cut(s) 491, 569, 608
MaeII ACGT 3 cut(s) 127, 173, 483
MalI GATC 4 cut(s) 167, 606, 819, 888
MbiI CCGCTC 1 cut(s) 635
MboI GATC 4 cut(s) 165, 604, 817, 886
MflI RGATCY 2 cut(s) 604, 817
MluCI AATT 5 cut(s) 360, 443, 542, 554, 791
MlyI GAGTC 2 cut(s) 660, 764
MroXI GAANNNNTTC 2 cut(s) 91, 393
MseI TTAA 3 cut(s) 369, 558, 842
MspI CCGG 3 cut(s) 65, 228, 847
MspR9I CCNGG 1 cut(s) 630
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 1 cut(s) 469
NcoI CCATGG 1 cut(s) 525
NdeII GATC 4 cut(s) 165, 604, 817, 886
NlaIII CATG 2 cut(s) 384, 529
PaeR7I CTCGAG 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PdmI GAANNNNTTC 2 cut(s) 91, 393
PfeI GAWTC 4 cut(s) 326, 672, 770, 867
PfoI TCCNGGA 1 cut(s) 628
PkrI GCNGC 2 cut(s) 31, 409
PleI GAGTC 2 cut(s) 659, 763
PpsI GAGTC 2 cut(s) 659, 763
Psp6I CCWGG 1 cut(s) 628
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 1 cut(s) 628
PspXI VCTCGAGB 1 cut(s) 718
PsuI RGATCY 2 cut(s) 604, 817
SaqAI TTAA 3 cut(s) 369, 558, 842
SatI GCNGC 2 cut(s) 30, 408
Sau3AI GATC 4 cut(s) 165, 604, 817, 886
SchI GAGTC 2 cut(s) 660, 764
ScrFI CCNGG 1 cut(s) 630
SfaNI GCATC 2 cut(s) 565, 754
SfcI CTRYAG 2 cut(s) 402, 759
Sfr274I CTCGAG 1 cut(s) 718
SlaI CTCGAG 1 cut(s) 718
SmlI CTYRAG 4 cut(s) 536, 614, 718, 862
SmoI CTYRAG 4 cut(s) 536, 614, 718, 862
Sse9I AATT 5 cut(s) 360, 443, 542, 554, 791
SsiI CCGC 4 cut(s) 215, 225, 467, 635
SspMI CTAG 3 cut(s) 491, 569, 608
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 3 cut(s) 694, 782, 840
TaiI ACGT 3 cut(s) 130, 176, 486
TaqI TCGA 4 cut(s) 164, 211, 550, 719
TasI AATT 5 cut(s) 360, 443, 542, 554, 791
TfiI GAWTC 4 cut(s) 326, 672, 770, 867
Tru1I TTAA 3 cut(s) 369, 558, 842
Tru9I TTAA 3 cut(s) 369, 558, 842
TscAI CASTG 2 cut(s) 511, 879
TseI GCWGC 2 cut(s) 29, 407
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 511, 879
XapI RAATTY 2 cut(s) 542, 554
XhoI CTCGAG 1 cut(s) 718
XmnI GAANNNNTTC 2 cut(s) 91, 393
XspI CTAG 3 cut(s) 491, 569, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.