Rw0G016180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00751
OG0010343
Physical Location & Seq
Reverse (-)
116961 .. 119809
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G016180.1

Sequence Viewer

Length: 801 bp
ATGCTCTTAGCTTCTTCTCTCGTTGCAGAGACAAGAATGATGAACCTCCTCCTACAATTACACTCGCAAACTGCTCGAAGGTGTATCACATCTTCTTCTTCTTCTTCTTCTTTCAGAAGCCTCTCTTTCTTATCAACCCACCCAATACAACAACCTCTTAAACCCTCTCAACACTTAAACCCTCCTCATTCTTCTTTGATTGGTGAAGAAACAGAAGAGGGAGGAACATCAGATGGATGGGAAGAAGGAGATAGTACAGATGGTTGGGAGGATGAGGATGTCGCCGAGCCTAAGGTTGGTGATGGAGGCGATGGTGGTGGAGTGGTGTTCCATGGTGTTCCCTGGGGTGAGCGGGCACTGTCCATTGCTTGTGAGGTGTTGACACGGTTCTGCGATGACATGAAGCTCTTCTCTTTCAAGACTACTCCTCGAGGATATGTGTTTGTGAGACTGGACAAACTATCAAACGAATATGGATGTCCAAGTATGGAAGACCTTGGGCGCTACAGTAAAGAATACAAGAAAAGGTTGGATGAAGTTGGAGCACTTGGAGAAATACCCAAAGATTTGGCTGTTGAGGTATCATCTCCTGGCGCTGAGAGATTACTAAAGGTACCAGGTGATTTACCTCGGTTTAAAGACAAGACCATGAGAGTGTGCTATTTAGAAGACGTGGATTCTAAACACCCAGAAAAGGATGGAGTATTTATGCTGGAGTCTGTTGAGACAGAGTCAGAGAGCTGTGTGTGGAAGTTGGCAAATGTGAAGGAAAACAGGGATCCGGACAGCAAAGATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

266

Amino Acids

29.44

Weight (kDa)

4.84

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7912 PF25498 202 - 264 7.6e-23 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 429
Acc65I GGTACC 1 cut(s) 613
AccB1I GGYRCC 1 cut(s) 613
AccBSI CCGCTC 1 cut(s) 352
AccIII TCCGGA 1 cut(s) 781
AciI CCGC 1 cut(s) 352
AclWI GGATC 2 cut(s) 773, 786
AfaI GTAC 2 cut(s) 256, 615
AfiI CCNNNNNNNGG 2 cut(s) 296, 694
AgsI TTSAA 1 cut(s) 418
AjiI CACGTC 1 cut(s) 673
AjnI CCWGG 3 cut(s) 341, 589, 616
AluBI AGCT 3 cut(s) 11, 406, 741
AluI AGCT 3 cut(s) 11, 406, 741
Alw21I GWGCWC 1 cut(s) 547
Alw26I GTCTC 3 cut(s) 23, 442, 719
AlwI GGATC 2 cut(s) 773, 786
Ama87I CYCGRG 1 cut(s) 429
Aor13HI TCCGGA 1 cut(s) 781
Asp700I GAANNNNTTC 1 cut(s) 407
Asp718I GGTACC 1 cut(s) 613
AspLEI GCGC 2 cut(s) 504, 596
AsuHPI GGTGA 4 cut(s) 215, 311, 359, 632
AvaI CYCGRG 1 cut(s) 429
AxyI CCTNAGG 1 cut(s) 291
BaeGI GKGCMC 1 cut(s) 358
BamHI GGATCC 1 cut(s) 778
BanI GGYRCC 1 cut(s) 613
BarI GAAGNNNNNNTAC 2 cut(s) 76, 108
BbsI GAAGAC 2 cut(s) 498, 675
Bbv12I GWGCWC 1 cut(s) 547
BccI CCATC 6 cut(s) 227, 231, 254, 296, 305, 692
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 3 cut(s) 343, 591, 618
BcoDI GTCTC 3 cut(s) 23, 442, 719
BfmI CTRYAG 1 cut(s) 505
BfoI RGCGCY 2 cut(s) 505, 597
Bme1390I CCNGG 3 cut(s) 343, 591, 618
BmeT110I CYCGRG 1 cut(s) 429
BmgBI CACGTC 1 cut(s) 673
BmiI GGNNCC 2 cut(s) 615, 780
BmrFI CCNGG 3 cut(s) 343, 591, 618
BmsI GCATC 1 cut(s) 784
BpiI GAAGAC 2 cut(s) 498, 675
BpmI CTGGAG 1 cut(s) 734
BsaJI CCNNGG 5 cut(s) 331, 341, 342, 496, 629
BsaWI WCCGGW 1 cut(s) 781
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 694
Bse1I ACTGG 1 cut(s) 456
Bse21I CCTNAGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 363
BseAI TCCGGA 1 cut(s) 781
BseBI CCWGG 3 cut(s) 343, 591, 618
BseDI CCNNGG 5 cut(s) 331, 341, 342, 496, 629
BseGI GGATG 6 cut(s) 242, 277, 283, 482, 538, 703
BseLI CCNNNNNNNGG 2 cut(s) 296, 694
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 3 cut(s) 38, 174, 417
BseSI GKGCMC 1 cut(s) 358
BshNI GGYRCC 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 547
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 1 cut(s) 782
BslI CCNNNNNNNGG 2 cut(s) 296, 694
BsmAI GTCTC 3 cut(s) 23, 442, 719
BsoBI CYCGRG 1 cut(s) 429
Bsp1286I GDGCHC 2 cut(s) 358, 547
Bsp13I TCCGGA 1 cut(s) 781
Bsp143I GATC 1 cut(s) 778
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 1 cut(s) 352
BspCNI CTCAG 1 cut(s) 589
BspEI TCCGGA 1 cut(s) 781
BspLI GGNNCC 2 cut(s) 615, 780
BspPI GGATC 2 cut(s) 773, 786
BspQI GCTCTTC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 613
BsrBI CCGCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 5 cut(s) 331, 341, 342, 496, 629
BssMI GATC 1 cut(s) 778
BssT1I CCWWGG 2 cut(s) 331, 496
Bst2UI CCWGG 3 cut(s) 343, 591, 618
Bst4CI ACNGT 3 cut(s) 360, 387, 509
Bst6I CTCTTC 2 cut(s) 210, 413
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 7, 291, 597
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 6 cut(s) 242, 277, 283, 482, 538, 703
BstH2I RGCGCY 2 cut(s) 505, 597
BstHHI GCGC 2 cut(s) 504, 596
BstKTI GATC 1 cut(s) 781
BstMAI GTCTC 3 cut(s) 23, 442, 719
BstMBI GATC 1 cut(s) 778
BstNI CCWGG 3 cut(s) 343, 591, 618
BstSCI CCNGG 3 cut(s) 341, 589, 616
BstSFI CTRYAG 1 cut(s) 505
BstSLI GKGCMC 1 cut(s) 358
BstV2I GAAGAC 2 cut(s) 498, 675
BstX2I RGATCY 1 cut(s) 778
BstXI CCANNNNNNTGG 1 cut(s) 568
BstYI RGATCY 1 cut(s) 778
Bsu36I CCTNAGG 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 331
BtgZI GCGATG 2 cut(s) 324, 408
BtrI CACGTC 1 cut(s) 673
BtsCI GGATG 6 cut(s) 242, 277, 283, 482, 538, 703
BtsIMutI CAGTG 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 2 cut(s) 504, 596
CsiI ACCWGGT 1 cut(s) 616
Csp6I GTAC 2 cut(s) 255, 614
CviAII CATG 4 cut(s) 332, 400, 649, 798
CviJI RGCY 6 cut(s) 11, 120, 289, 406, 572, 741
CviKI_1 RGCY 6 cut(s) 11, 120, 289, 406, 572, 741
CviQI GTAC 2 cut(s) 255, 614
DdeI CTNAG 3 cut(s) 7, 291, 597
DpnI GATC 1 cut(s) 780
DpnII GATC 1 cut(s) 778
DraI TTTAAA 1 cut(s) 637
Eam1104I CTCTTC 2 cut(s) 210, 413
EarI CTCTTC 2 cut(s) 210, 413
Eco130I CCWWGG 2 cut(s) 331, 496
Eco81I CCTNAGG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 429
EcoRII CCWGG 3 cut(s) 341, 589, 616
EcoT14I CCWWGG 2 cut(s) 331, 496
EcoT22I ATGCAT 1 cut(s) 799
ErhI CCWWGG 2 cut(s) 331, 496
FaeI CATG 4 cut(s) 335, 403, 652, 801
FaiI YATR 8 cut(s) 333, 401, 438, 474, 488, 650, 710, 799
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FatI CATG 4 cut(s) 331, 399, 648, 797
FauI CCCGC 1 cut(s) 345
FokI GGATG 6 cut(s) 249, 284, 290, 489, 545, 710
GlaI GCGC 2 cut(s) 503, 595
GsuI CTGGAG 1 cut(s) 734
HaeII RGCGCY 2 cut(s) 505, 597
HapII CCGG 1 cut(s) 782
HhaI GCGC 2 cut(s) 504, 596
Hin1II CATG 4 cut(s) 335, 403, 652, 801
Hin6I GCGC 2 cut(s) 502, 594
HinP1I GCGC 2 cut(s) 502, 594
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 3 cut(s) 677, 716, 731
HpaII CCGG 1 cut(s) 782
HphI GGTGA 4 cut(s) 215, 311, 359, 632
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 3 cut(s) 116, 232, 736
Hpy188III TCNNGA 2 cut(s) 418, 782
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 3 cut(s) 72, 239, 760
HpyCH4III ACNGT 3 cut(s) 360, 387, 509
HpyCH4IV ACGT 1 cut(s) 672
HpyCH4V TGCA 2 cut(s) 26, 797
HpyF3I CTNAG 3 cut(s) 7, 291, 597
HpySE526I ACGT 1 cut(s) 672
Hsp92II CATG 4 cut(s) 335, 403, 652, 801
HspAI GCGC 2 cut(s) 502, 594
Kpn2I TCCGGA 1 cut(s) 781
KpnI GGTACC 1 cut(s) 617
Kzo9I GATC 1 cut(s) 778
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 1 cut(s) 542
LweI GCATC 1 cut(s) 784
MabI ACCWGGT 1 cut(s) 616
MaeII ACGT 1 cut(s) 672
MalI GATC 1 cut(s) 780
MbiI CCGCTC 1 cut(s) 352
MboI GATC 1 cut(s) 778
MflI RGATCY 1 cut(s) 778
MhlI GDGCHC 2 cut(s) 358, 547
MluCI AATT 1 cut(s) 56
MlyI GAGTC 2 cut(s) 725, 740
MmeI TCCRAC 2 cut(s) 510, 520
Mph1103I ATGCAT 1 cut(s) 799
MroI TCCGGA 1 cut(s) 781
MroXI GAANNNNTTC 1 cut(s) 407
MseI TTAA 3 cut(s) 159, 176, 636
MslI CAYNNNNRTG 1 cut(s) 653
MspI CCGG 1 cut(s) 782
MspR9I CCNGG 3 cut(s) 343, 591, 618
MvaI CCWGG 3 cut(s) 343, 591, 618
NcoI CCATGG 1 cut(s) 331
NdeII GATC 1 cut(s) 778
NlaIII CATG 4 cut(s) 335, 403, 652, 801
NlaIV GGNNCC 2 cut(s) 615, 780
NmeAIII GCCGAG 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 799
PaeR7I CTCGAG 1 cut(s) 429
PasI CCCWGGG 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 677
PflFI GACNNNGTC 1 cut(s) 730
PleI GAGTC 2 cut(s) 724, 739
PpsI GAGTC 2 cut(s) 724, 739
Psp6I CCWGG 3 cut(s) 341, 589, 616
PspGI CCWGG 3 cut(s) 341, 589, 616
PspN4I GGNNCC 2 cut(s) 615, 780
PspXI VCTCGAGB 1 cut(s) 429
PsuI RGATCY 1 cut(s) 778
PsyI GACNNNGTC 1 cut(s) 730
RsaI GTAC 2 cut(s) 256, 615
RsaNI GTAC 2 cut(s) 255, 614
RseI CAYNNNNRTG 1 cut(s) 653
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 3 cut(s) 159, 176, 636
Sau3AI GATC 1 cut(s) 778
SchI GAGTC 2 cut(s) 725, 740
ScrFI CCNGG 3 cut(s) 343, 591, 618
SduI GDGCHC 2 cut(s) 358, 547
SexAI ACCWGGT 1 cut(s) 616
SfaNI GCATC 1 cut(s) 784
SfcI CTRYAG 1 cut(s) 505
Sfr274I CTCGAG 1 cut(s) 429
SlaI CTCGAG 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 1 cut(s) 56
SsiI CCGC 1 cut(s) 352
StyD4I CCNGG 3 cut(s) 341, 589, 616
StyI CCWWGG 2 cut(s) 331, 496
TaaI ACNGT 3 cut(s) 360, 387, 509
TaiI ACGT 1 cut(s) 675
TaqI TCGA 2 cut(s) 76, 430
TasI AATT 1 cut(s) 56
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 3 cut(s) 159, 176, 636
Tru9I TTAA 3 cut(s) 159, 176, 636
TscAI CASTG 1 cut(s) 363
TspDTI ATGAA 3 cut(s) 56, 416, 549
TspRI CASTG 1 cut(s) 363
Tth111I GACNNNGTC 1 cut(s) 730
XhoI CTCGAG 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 407
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.