Rmu_sc0007538.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007538.1
OG0010343
Physical Location & Seq
Forward (+)
31831 .. 36009
4179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007538.1_g000005.1.cds

Sequence Viewer

Length: 1053 bp
atgtggtatgtcgatggtcgccgaaaggacggcggcggaggagagggcctgaagagcgccctagaagactcggaagttgctgtcctcgagaagattcttgcaacaatcgataagtgcagtgacctccggactccggtgaaccttccgtttcacatttcagagtttggtggaatttggaaatgccattctggttcttattatgcccttagcttcttctctcgttgcagagacaagaatgatgaacctcctcctacaattacactcgcaaactgctcgaaggtacccacaatattttctcccgctactcttcgattcctaacaacccagtcctctgaggacctcgacgattaccaagatgacacctttcaaggtgaagaaacagaagagggaggaacatcagatggatgggaagaaggagatagtacagatggttgggaggatgaggatgtcgccgagcctaaggttggtgatggaggcgatggtggtggagtggtgttccatggtgttccctggggtgagcgggcactgtccattgcttgtgaggtgttgacacggttctgcgatgacatgaagctcttctctttcaagactactcctcgaggatatgtgtttgtgagactggacaaactatcaaacgaatatggatgtccaagtatggaagaccttgggcgctacagtaaagaatacaagaaaaggttggatgaagttggagcacttggagaaatacccaaagatttggctgttgaggtatcatctcctggcgctgagagattactaaaggtaccaggtgatttacctcggtttaaagacaagaccatgagagtgtgctatttagaagacgtggattctaaacacccagaaaaggatggagtatttatgctggagtctgttgagacagagtcagagagctgtgtgtggaagttggcaaatgtgaaggaaaacagggatccggacagcaaaggtagaccattaacacgtaaacagacagattggagattaaaattgccattttctgtgcataaaagggtacttctgtacctaaactcaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

350

Amino Acids

39.17

Weight (kDa)

4.82

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 597
Acc65I GGTACC 2 cut(s) 280, 781
AccB1I GGYRCC 2 cut(s) 280, 781
AccBSI CCGCTC 1 cut(s) 520
AccI GTMKAC 1 cut(s) 964
AccIII TCCGGA 2 cut(s) 126, 949
AciI CCGC 4 cut(s) 33, 36, 300, 520
AclWI GGATC 2 cut(s) 941, 954
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 5 cut(s) 282, 424, 783, 1029, 1037
AfiI CCNNNNNNNGG 3 cut(s) 133, 464, 862
AflIII ACRYGT 1 cut(s) 974
AgsI TTSAA 2 cut(s) 368, 586
AjiI CACGTC 1 cut(s) 841
AjnI CCWGG 3 cut(s) 509, 757, 784
AluBI AGCT 3 cut(s) 210, 574, 909
AluI AGCT 3 cut(s) 210, 574, 909
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 3 cut(s) 222, 610, 887
AlwI GGATC 2 cut(s) 941, 954
Ama87I CYCGRG 2 cut(s) 86, 597
Aor13HI TCCGGA 2 cut(s) 126, 949
AoxI GGCC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 575
Asp718I GGTACC 2 cut(s) 280, 781
AspLEI GCGC 3 cut(s) 59, 672, 764
AspS9I GGNCC 2 cut(s) 46, 337
AsuHPI GGTGA 5 cut(s) 148, 383, 479, 527, 800
AvaI CYCGRG 2 cut(s) 86, 597
AvaII GGWCC 1 cut(s) 337
AxyI CCTNAGG 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 526
BaeI ACNNNNGTAYC 4 cut(s) 1019, 1019, 1052, 1052
BamHI GGATCC 1 cut(s) 946
BanI GGYRCC 2 cut(s) 280, 781
BbsI GAAGAC 3 cut(s) 72, 666, 843
Bbv12I GWGCWC 1 cut(s) 715
BccI CCATC 7 cut(s) 8, 395, 399, 422, 464, 473, 860
BceAI ACGGC 1 cut(s) 46
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BciT130I CCWGG 3 cut(s) 511, 759, 786
BcoDI GTCTC 3 cut(s) 222, 610, 887
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 673
BfoI RGCGCY 3 cut(s) 60, 673, 765
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 3 cut(s) 511, 759, 786
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 2 cut(s) 86, 597
BmgBI CACGTC 1 cut(s) 841
BmgT120I GGNCC 2 cut(s) 46, 337
BmiI GGNNCC 3 cut(s) 282, 783, 948
BmrFI CCNGG 3 cut(s) 511, 759, 786
BmrI ACTGGG 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 319
BpiI GAAGAC 3 cut(s) 72, 666, 843
BpmI CTGGAG 1 cut(s) 902
Bpu10I CCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 1030
Bsa29I ATCGAT 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 977
BsaJI CCNNGG 5 cut(s) 499, 509, 510, 664, 797
BsaWI WCCGGW 3 cut(s) 126, 133, 949
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 464, 862
Bse1I ACTGG 2 cut(s) 325, 624
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 531
BseAI TCCGGA 2 cut(s) 126, 949
BseBI CCWGG 3 cut(s) 511, 759, 786
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 5 cut(s) 499, 509, 510, 664, 797
BseGI GGATG 6 cut(s) 410, 445, 451, 650, 706, 871
BseLI CCNNNNNNNGG 3 cut(s) 133, 464, 862
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 2 cut(s) 324, 756
BseNI ACTGG 2 cut(s) 325, 624
BseRI GAGGAG 3 cut(s) 54, 237, 585
BseSI GKGCMC 1 cut(s) 526
BsgI GTGCAG 1 cut(s) 136
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 2 cut(s) 280, 781
BshVI ATCGAT 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 715
BsiHKCI CYCGRG 2 cut(s) 86, 597
BsiSI CCGG 3 cut(s) 127, 134, 950
BslI CCNNNNNNNGG 3 cut(s) 133, 464, 862
BsmAI GTCTC 3 cut(s) 222, 610, 887
BsnI GGCC 1 cut(s) 48
BsoBI CYCGRG 2 cut(s) 86, 597
Bsp1286I GDGCHC 2 cut(s) 526, 715
Bsp13I TCCGGA 2 cut(s) 126, 949
Bsp143I GATC 1 cut(s) 946
Bsp19I CCATGG 1 cut(s) 499
BspACI CCGC 4 cut(s) 33, 36, 300, 520
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 325, 757
BspDI ATCGAT 1 cut(s) 108
BspEI TCCGGA 2 cut(s) 126, 949
BspLI GGNNCC 3 cut(s) 282, 783, 948
BspPI GGATC 2 cut(s) 941, 954
BspQI GCTCTTC 2 cut(s) 47, 581
BspT107I GGYRCC 2 cut(s) 280, 781
BsrBI CCGCTC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 2 cut(s) 325, 624
BssECI CCNNGG 5 cut(s) 499, 509, 510, 664, 797
BssMI GATC 1 cut(s) 946
BssT1I CCWWGG 2 cut(s) 499, 664
Bst2UI CCWGG 3 cut(s) 511, 759, 786
Bst4CI ACNGT 3 cut(s) 528, 555, 677
Bst6I CTCTTC 4 cut(s) 47, 312, 378, 581
BstBAI YACGTR 1 cut(s) 977
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 4 cut(s) 206, 333, 459, 765
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 6 cut(s) 410, 445, 451, 650, 706, 871
BstH2I RGCGCY 3 cut(s) 60, 673, 765
BstHHI GCGC 3 cut(s) 59, 672, 764
BstKTI GATC 1 cut(s) 949
BstMAI GTCTC 3 cut(s) 222, 610, 887
BstMBI GATC 1 cut(s) 946
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 3 cut(s) 511, 759, 786
BstSCI CCNGG 3 cut(s) 509, 757, 784
BstSFI CTRYAG 1 cut(s) 673
BstSLI GKGCMC 1 cut(s) 526
BstV2I GAAGAC 3 cut(s) 72, 666, 843
BstX2I RGATCY 1 cut(s) 946
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 1 cut(s) 946
Bsu15I ATCGAT 1 cut(s) 108
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 1 cut(s) 48
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 499
BtgZI GCGATG 2 cut(s) 492, 576
BtrI CACGTC 1 cut(s) 841
BtsCI GGATG 6 cut(s) 410, 445, 451, 650, 706, 871
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 2 cut(s) 124, 524
Cac8I GCNNGC 1 cut(s) 522
CfoI GCGC 3 cut(s) 59, 672, 764
Cfr13I GGNCC 2 cut(s) 46, 337
ClaI ATCGAT 1 cut(s) 108
CsiI ACCWGGT 1 cut(s) 784
Csp6I GTAC 5 cut(s) 281, 423, 782, 1028, 1036
CviAII CATG 3 cut(s) 500, 568, 817
CviJI RGCY 6 cut(s) 48, 210, 457, 574, 740, 909
CviKI_1 RGCY 6 cut(s) 48, 210, 457, 574, 740, 909
CviQI GTAC 5 cut(s) 281, 423, 782, 1028, 1036
DdeI CTNAG 4 cut(s) 206, 333, 459, 765
DpnI GATC 1 cut(s) 948
DpnII GATC 1 cut(s) 946
DraI TTTAAA 1 cut(s) 805
Eam1104I CTCTTC 4 cut(s) 47, 312, 378, 581
EarI CTCTTC 4 cut(s) 47, 312, 378, 581
EciI GGCGGA 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 499, 664
Eco47I GGWCC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 459
Eco88I CYCGRG 2 cut(s) 86, 597
EcoO109I RGGNCCY 2 cut(s) 46, 337
EcoRII CCWGG 3 cut(s) 509, 757, 784
EcoT14I CCWWGG 2 cut(s) 499, 664
ErhI CCWWGG 2 cut(s) 499, 664
FaeI CATG 3 cut(s) 503, 571, 820
FatI CATG 3 cut(s) 499, 567, 816
FauI CCCGC 2 cut(s) 307, 513
FblI GTMKAC 1 cut(s) 964
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 6 cut(s) 417, 452, 458, 657, 713, 878
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 62
GlaI GCGC 3 cut(s) 58, 671, 763
GluI GCNGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 902
HaeII RGCGCY 3 cut(s) 60, 673, 765
HaeIII GGCC 1 cut(s) 48
HapII CCGG 3 cut(s) 127, 134, 950
HhaI GCGC 3 cut(s) 59, 672, 764
Hin1II CATG 3 cut(s) 503, 571, 820
Hin6I GCGC 3 cut(s) 57, 670, 762
HinP1I GCGC 3 cut(s) 57, 670, 762
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 7 cut(s) 68, 94, 130, 312, 845, 884, 899
HpaII CCGG 3 cut(s) 127, 134, 950
HphI GGTGA 5 cut(s) 148, 383, 479, 527, 800
Hpy166II GTNNAC 4 cut(s) 139, 549, 965, 980
Hpy188I TCNGA 5 cut(s) 73, 160, 334, 400, 904
Hpy188III TCNNGA 4 cut(s) 88, 127, 586, 950
Hpy8I GTNNAC 4 cut(s) 139, 549, 965, 980
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 4 cut(s) 152, 271, 407, 928
HpyCH4III ACNGT 3 cut(s) 528, 555, 677
HpyCH4IV ACGT 2 cut(s) 840, 976
HpyCH4V TGCA 4 cut(s) 101, 117, 225, 1018
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 4 cut(s) 206, 333, 459, 765
HpySE526I ACGT 2 cut(s) 840, 976
Hsp92II CATG 3 cut(s) 503, 571, 820
HspAI GCGC 3 cut(s) 57, 670, 762
Kpn2I TCCGGA 2 cut(s) 126, 949
KpnI GGTACC 2 cut(s) 284, 785
Kzo9I GATC 1 cut(s) 946
LguI GCTCTTC 2 cut(s) 47, 581
LmnI GCTCC 1 cut(s) 710
MabI ACCWGGT 1 cut(s) 784
MaeI CTAG 1 cut(s) 62
MaeII ACGT 2 cut(s) 840, 976
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 948
MbiI CCGCTC 1 cut(s) 520
MboI GATC 1 cut(s) 946
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 2 cut(s) 526, 715
MluCI AATT 3 cut(s) 171, 255, 1001
MlyI GAGTC 4 cut(s) 62, 124, 893, 908
MmeI TCCRAC 2 cut(s) 678, 688
MroI TCCGGA 2 cut(s) 126, 949
MroXI GAANNNNTTC 1 cut(s) 575
MseI TTAA 3 cut(s) 804, 971, 998
MslI CAYNNNNRTG 1 cut(s) 821
MspI CCGG 3 cut(s) 127, 134, 950
MspR9I CCNGG 3 cut(s) 511, 759, 786
MvaI CCWGG 3 cut(s) 511, 759, 786
MwoI GCNNNNNNNGC 1 cut(s) 54
NcoI CCATGG 1 cut(s) 499
NdeII GATC 1 cut(s) 946
NlaIII CATG 3 cut(s) 503, 571, 820
NlaIV GGNNCC 3 cut(s) 282, 783, 948
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 1 cut(s) 119
PaeR7I CTCGAG 2 cut(s) 86, 597
PasI CCCWGGG 1 cut(s) 510
PciSI GCTCTTC 2 cut(s) 47, 581
PdmI GAANNNNTTC 1 cut(s) 575
PfeI GAWTC 3 cut(s) 94, 312, 845
PflFI GACNNNGTC 1 cut(s) 898
PkrI GCNGC 1 cut(s) 35
PleI GAGTC 4 cut(s) 62, 124, 892, 907
PpsI GAGTC 4 cut(s) 62, 124, 892, 907
Ppu21I YACGTR 1 cut(s) 977
PpuMI RGGWCCY 1 cut(s) 337
Psp5II RGGWCCY 1 cut(s) 337
Psp6I CCWGG 3 cut(s) 509, 757, 784
PspGI CCWGG 3 cut(s) 509, 757, 784
PspN4I GGNNCC 3 cut(s) 282, 783, 948
PspPI GGNCC 2 cut(s) 46, 337
PspPPI RGGWCCY 1 cut(s) 337
PspXI VCTCGAGB 1 cut(s) 597
PsuI RGATCY 1 cut(s) 946
PsyI GACNNNGTC 1 cut(s) 898
RsaI GTAC 5 cut(s) 282, 424, 783, 1029, 1037
RsaNI GTAC 5 cut(s) 281, 423, 782, 1028, 1036
RseI CAYNNNNRTG 1 cut(s) 821
SapI GCTCTTC 2 cut(s) 47, 581
SaqAI TTAA 3 cut(s) 804, 971, 998
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 946
Sau96I GGNCC 2 cut(s) 46, 337
SchI GAGTC 4 cut(s) 62, 124, 893, 908
ScrFI CCNGG 3 cut(s) 511, 759, 786
SduI GDGCHC 2 cut(s) 526, 715
SexAI ACCWGGT 1 cut(s) 784
SfcI CTRYAG 1 cut(s) 673
Sfr274I CTCGAG 2 cut(s) 86, 597
SinI GGWCC 1 cut(s) 337
SlaI CTCGAG 2 cut(s) 86, 597
SmiMI CAYNNNNRTG 1 cut(s) 821
SmlI CTYRAG 3 cut(s) 86, 597, 1045
SmoI CTYRAG 3 cut(s) 86, 597, 1045
Sse9I AATT 3 cut(s) 171, 255, 1001
SsiI CCGC 4 cut(s) 33, 36, 300, 520
SspI AATATT 1 cut(s) 291
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 509, 757, 784
StyI CCWWGG 2 cut(s) 499, 664
TaaI ACNGT 3 cut(s) 528, 555, 677
TaiI ACGT 2 cut(s) 843, 979
TaqI TCGA 7 cut(s) 12, 87, 108, 275, 310, 342, 598
TasI AATT 3 cut(s) 171, 255, 1001
TatI WGTACW 1 cut(s) 422
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 3 cut(s) 94, 312, 845
Tru1I TTAA 3 cut(s) 804, 971, 998
Tru9I TTAA 3 cut(s) 804, 971, 998
TscAI CASTG 2 cut(s) 124, 531
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 255, 584, 717
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 2 cut(s) 124, 531
Tth111I GACNNNGTC 1 cut(s) 898
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 1 cut(s) 171
XhoI CTCGAG 2 cut(s) 86, 597
XmiI GTMKAC 1 cut(s) 964
XmnI GAANNNNTTC 1 cut(s) 575
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.