Rh4CG382800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0010343
Physical Location & Seq
Reverse (-)
63606390 .. 63612261
5872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG382800.1

Sequence Viewer

Length: 1008 bp
ATGCCATTCTGGTTCTTATATATTATGCTCTTCTTAGCTTCTTCTCTCGTTGCAGAGACAAGAATGATGAACCTCCTCCTACAATTACACTCGCAAACTGCTCGAAGGTGTATCACATCTTCTTCTTCTTCTTCTTCTTCTTTCAGAAGCCTCTCTTTCTTATCAACCCACCCAATACAACAACCTCTTAAACCCTCTCAACACTTAAACCCTCCTCATTCTTCTTTGATTGGTTTCTCTCCAAAACCCAGACCCACAATATTTTCTCCCGCTACTCTTCGATTCCTAACAACCCAGTCCTCTGAGGACCTCGACGATTACCAAGATGACACCTTTCAAGGTGAAGGAACATCAGATGGATGGGAAGAAGGAGATAGTACAGATGGTTGGGAGGACGAGGATGTCGCCGAGCCTAAGGTTGGTGATGGAGGCGATGGTGGTGGAGTGGTGTTCCATGGTGTTCCCTGGGGTGAGCGGGCACTGTCCATTGCTCGTGAGGTGTTGACACGGTTCTGTGATGACATGAAGCTCTTCTCTTTCAAGACTACTCCTCGAGGATATGTGTTTGTGAGACTGGACAAACTATCAAACGAATATGGATGTCCAAGTATGGAAGACCTTGGGCGCTACGGTAAAGAATACAAGAAAAGGTTGGATGAAGTTGGAGCACTTGGAGAAATACCCGAAGATTTGGCTGTTGAGGTATCATCTCCTGGCGCGGAGAGATTACTAAAGGTACCAGGTGATTTACCTCGGTTTAAAGACAAGACCATGAGAGTATGCTATTTAGAAGACGTGGATTCTAAACACCCAGAAAAGGATGGAGTATTTATGCTGGAGTCTGTTGAGACAGAGTCAGAGAGCTGTGTGTGGAAGTTGGCAAATGTGAAGGAAAACAGGGATCCGGACAGCAAAGGTAGACCATTAACACGTAAACAGACAGATTGGAGATTAAAATTGCCATTTTCTGCACATAAAAGGGTACTTCTGTACCTAAACTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

335

Amino Acids

37.73

Weight (kDa)

5.32

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7912 PF25498 243 - 331 5.6e-37 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 401
AbsI CCTCGAGG 1 cut(s) 552
Acc65I GGTACC 1 cut(s) 736
AccB1I GGYRCC 1 cut(s) 736
AccBSI CCGCTC 1 cut(s) 475
AccI GTMKAC 1 cut(s) 919
AccII CGCG 1 cut(s) 719
AccIII TCCGGA 1 cut(s) 904
AciI CCGC 3 cut(s) 270, 475, 719
AclWI GGATC 2 cut(s) 896, 909
AfaI GTAC 4 cut(s) 379, 738, 984, 992
AfiI CCNNNNNNNGG 2 cut(s) 419, 817
AflIII ACRYGT 1 cut(s) 929
AgsI TTSAA 2 cut(s) 338, 541
AjiI CACGTC 1 cut(s) 796
AjnI CCWGG 3 cut(s) 464, 712, 739
AluBI AGCT 3 cut(s) 38, 529, 864
AluI AGCT 3 cut(s) 38, 529, 864
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 3 cut(s) 50, 565, 842
AlwI GGATC 2 cut(s) 896, 909
Ama87I CYCGRG 1 cut(s) 552
Aor13HI TCCGGA 1 cut(s) 904
Asp700I GAANNNNTTC 1 cut(s) 530
Asp718I GGTACC 1 cut(s) 736
AspLEI GCGC 2 cut(s) 627, 719
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 4 cut(s) 353, 434, 482, 755
AvaI CYCGRG 1 cut(s) 552
AvaII GGWCC 1 cut(s) 307
AxyI CCTNAGG 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 481
BaeI ACNNNNGTAYC 4 cut(s) 974, 974, 1007, 1007
BamHI GGATCC 1 cut(s) 901
BanI GGYRCC 1 cut(s) 736
BarI GAAGNNNNNNTAC 2 cut(s) 103, 135
BauI CACGAG 1 cut(s) 492
BbsI GAAGAC 2 cut(s) 621, 798
Bbv12I GWGCWC 1 cut(s) 670
BccI CCATC 6 cut(s) 350, 354, 377, 419, 428, 815
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 3 cut(s) 466, 714, 741
BcoDI GTCTC 3 cut(s) 50, 565, 842
BfoI RGCGCY 1 cut(s) 628
Bme1390I CCNGG 3 cut(s) 466, 714, 741
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 552
BmgBI CACGTC 1 cut(s) 796
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 738, 903
BmrFI CCNGG 3 cut(s) 466, 714, 741
BmrI ACTGGG 1 cut(s) 289
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 621, 798
BpmI CTGGAG 1 cut(s) 857
BpuEI CTTGAG 1 cut(s) 985
BsaAI YACGTR 1 cut(s) 932
BsaJI CCNNGG 5 cut(s) 454, 464, 465, 619, 752
BsaWI WCCGGW 1 cut(s) 904
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 817
Bse1I ACTGG 2 cut(s) 295, 579
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 486
BseAI TCCGGA 1 cut(s) 904
BseBI CCWGG 3 cut(s) 466, 714, 741
BseDI CCNNGG 5 cut(s) 454, 464, 465, 619, 752
BseGI GGATG 5 cut(s) 365, 406, 605, 661, 826
BseLI CCNNNNNNNGG 2 cut(s) 419, 817
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 295, 579
BseRI GAGGAG 3 cut(s) 65, 204, 540
BseSI GKGCMC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 954
Bsh1236I CGCG 1 cut(s) 719
BshNI GGYRCC 1 cut(s) 736
BsiHKAI GWGCWC 1 cut(s) 670
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 1 cut(s) 905
BslI CCNNNNNNNGG 2 cut(s) 419, 817
BsmAI GTCTC 3 cut(s) 50, 565, 842
BsoBI CYCGRG 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 481, 670
Bsp13I TCCGGA 1 cut(s) 904
Bsp143I GATC 1 cut(s) 901
Bsp19I CCATGG 1 cut(s) 454
BspACI CCGC 3 cut(s) 270, 475, 719
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 904
BspFNI CGCG 1 cut(s) 719
BspLI GGNNCC 2 cut(s) 738, 903
BspPI GGATC 2 cut(s) 896, 909
BspQI GCTCTTC 2 cut(s) 35, 536
BspT107I GGYRCC 1 cut(s) 736
BsrBI CCGCTC 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 2 cut(s) 295, 579
BssECI CCNNGG 5 cut(s) 454, 464, 465, 619, 752
BssMI GATC 1 cut(s) 901
BssSI CACGAG 1 cut(s) 492
BssT1I CCWWGG 2 cut(s) 454, 619
Bst2BI CACGAG 1 cut(s) 492
Bst2UI CCWGG 3 cut(s) 466, 714, 741
Bst4CI ACNGT 3 cut(s) 483, 510, 632
Bst6I CTCTTC 3 cut(s) 35, 282, 536
BstBAI YACGTR 1 cut(s) 932
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 3 cut(s) 34, 303, 414
BstDSI CCRYGG 1 cut(s) 454
BstF5I GGATG 5 cut(s) 365, 406, 605, 661, 826
BstFNI CGCG 1 cut(s) 719
BstH2I RGCGCY 1 cut(s) 628
BstHHI GCGC 2 cut(s) 627, 719
BstKTI GATC 1 cut(s) 904
BstMAI GTCTC 3 cut(s) 50, 565, 842
BstMBI GATC 1 cut(s) 901
BstNI CCWGG 3 cut(s) 466, 714, 741
BstSCI CCNGG 3 cut(s) 464, 712, 739
BstSLI GKGCMC 1 cut(s) 481
BstUI CGCG 1 cut(s) 719
BstV2I GAAGAC 2 cut(s) 621, 798
BstX2I RGATCY 1 cut(s) 901
BstYI RGATCY 1 cut(s) 901
Bsu36I CCTNAGG 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 454
BtgZI GCGATG 1 cut(s) 447
BtrI CACGTC 1 cut(s) 796
BtsCI GGATG 5 cut(s) 365, 406, 605, 661, 826
BtsIMutI CAGTG 1 cut(s) 479
Cac8I GCNNGC 1 cut(s) 477
CfoI GCGC 2 cut(s) 627, 719
Cfr13I GGNCC 1 cut(s) 307
CsiI ACCWGGT 1 cut(s) 739
Csp6I GTAC 4 cut(s) 378, 737, 983, 991
CviAII CATG 3 cut(s) 455, 523, 772
CviJI RGCY 6 cut(s) 38, 150, 412, 529, 695, 864
CviKI_1 RGCY 6 cut(s) 38, 150, 412, 529, 695, 864
CviQI GTAC 4 cut(s) 378, 737, 983, 991
DdeI CTNAG 3 cut(s) 34, 303, 414
DpnI GATC 1 cut(s) 903
DpnII GATC 1 cut(s) 901
DraI TTTAAA 1 cut(s) 760
DrdI GACNNNNNNGTC 1 cut(s) 401
DseDI GACNNNNNNGTC 1 cut(s) 401
Eam1104I CTCTTC 3 cut(s) 35, 282, 536
EarI CTCTTC 3 cut(s) 35, 282, 536
Eco130I CCWWGG 2 cut(s) 454, 619
Eco47I GGWCC 1 cut(s) 307
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 3 cut(s) 464, 712, 739
EcoT14I CCWWGG 2 cut(s) 454, 619
ErhI CCWWGG 2 cut(s) 454, 619
FaeI CATG 3 cut(s) 458, 526, 775
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FatI CATG 3 cut(s) 454, 522, 771
FauI CCCGC 2 cut(s) 277, 468
FblI GTMKAC 1 cut(s) 919
FokI GGATG 5 cut(s) 372, 413, 612, 668, 833
GlaI GCGC 2 cut(s) 626, 718
GsuI CTGGAG 1 cut(s) 857
HaeII RGCGCY 1 cut(s) 628
HapII CCGG 1 cut(s) 905
HhaI GCGC 2 cut(s) 627, 719
Hin1II CATG 3 cut(s) 458, 526, 775
Hin6I GCGC 2 cut(s) 625, 717
HinP1I GCGC 2 cut(s) 625, 717
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 4 cut(s) 282, 800, 839, 854
HpaII CCGG 1 cut(s) 905
HphI GGTGA 4 cut(s) 353, 434, 482, 755
Hpy166II GTNNAC 3 cut(s) 504, 920, 935
Hpy188I TCNGA 4 cut(s) 146, 304, 355, 859
Hpy188III TCNNGA 3 cut(s) 494, 541, 905
Hpy8I GTNNAC 3 cut(s) 504, 920, 935
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 4 cut(s) 99, 338, 362, 883
HpyCH4III ACNGT 3 cut(s) 483, 510, 632
HpyCH4IV ACGT 2 cut(s) 795, 931
HpyCH4V TGCA 2 cut(s) 53, 971
HpyF3I CTNAG 3 cut(s) 34, 303, 414
HpySE526I ACGT 2 cut(s) 795, 931
Hsp92II CATG 3 cut(s) 458, 526, 775
HspAI GCGC 2 cut(s) 625, 717
Kpn2I TCCGGA 1 cut(s) 904
KpnI GGTACC 1 cut(s) 740
Kzo9I GATC 1 cut(s) 901
LguI GCTCTTC 2 cut(s) 35, 536
LmnI GCTCC 1 cut(s) 665
MabI ACCWGGT 1 cut(s) 739
MaeII ACGT 2 cut(s) 795, 931
MalI GATC 1 cut(s) 903
MbiI CCGCTC 1 cut(s) 475
MboI GATC 1 cut(s) 901
MflI RGATCY 1 cut(s) 901
MhlI GDGCHC 2 cut(s) 481, 670
MluCI AATT 2 cut(s) 83, 956
MlyI GAGTC 2 cut(s) 848, 863
MmeI TCCRAC 2 cut(s) 633, 643
MroI TCCGGA 1 cut(s) 904
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 5 cut(s) 189, 206, 759, 926, 953
MspI CCGG 1 cut(s) 905
MspR9I CCNGG 3 cut(s) 466, 714, 741
MvaI CCWGG 3 cut(s) 466, 714, 741
MvnI CGCG 1 cut(s) 719
NcoI CCATGG 1 cut(s) 454
NdeII GATC 1 cut(s) 901
NlaIII CATG 3 cut(s) 458, 526, 775
NlaIV GGNNCC 2 cut(s) 738, 903
NmeAIII GCCGAG 1 cut(s) 433
PaeR7I CTCGAG 1 cut(s) 552
PasI CCCWGGG 1 cut(s) 465
PciSI GCTCTTC 2 cut(s) 35, 536
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 2 cut(s) 282, 800
PflFI GACNNNGTC 1 cut(s) 853
PleI GAGTC 2 cut(s) 847, 862
PpsI GAGTC 2 cut(s) 847, 862
Ppu21I YACGTR 1 cut(s) 932
PpuMI RGGWCCY 1 cut(s) 307
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 3 cut(s) 464, 712, 739
PspGI CCWGG 3 cut(s) 464, 712, 739
PspN4I GGNNCC 2 cut(s) 738, 903
PspPI GGNCC 1 cut(s) 307
PspPPI RGGWCCY 1 cut(s) 307
PspXI VCTCGAGB 1 cut(s) 552
PsuI RGATCY 1 cut(s) 901
PsyI GACNNNGTC 1 cut(s) 853
RsaI GTAC 4 cut(s) 379, 738, 984, 992
RsaNI GTAC 4 cut(s) 378, 737, 983, 991
SapI GCTCTTC 2 cut(s) 35, 536
SaqAI TTAA 5 cut(s) 189, 206, 759, 926, 953
Sau3AI GATC 1 cut(s) 901
Sau96I GGNCC 1 cut(s) 307
SchI GAGTC 2 cut(s) 848, 863
ScrFI CCNGG 3 cut(s) 466, 714, 741
SduI GDGCHC 2 cut(s) 481, 670
SexAI ACCWGGT 1 cut(s) 739
Sfr274I CTCGAG 1 cut(s) 552
SinI GGWCC 1 cut(s) 307
SlaI CTCGAG 1 cut(s) 552
SmlI CTYRAG 2 cut(s) 552, 1000
SmoI CTYRAG 2 cut(s) 552, 1000
Sse9I AATT 2 cut(s) 83, 956
SsiI CCGC 3 cut(s) 270, 475, 719
SspI AATATT 1 cut(s) 261
StyD4I CCNGG 3 cut(s) 464, 712, 739
StyI CCWWGG 2 cut(s) 454, 619
TaaI ACNGT 3 cut(s) 483, 510, 632
TaiI ACGT 2 cut(s) 798, 934
TaqI TCGA 4 cut(s) 103, 280, 312, 553
TasI AATT 2 cut(s) 83, 956
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 2 cut(s) 282, 800
Tru1I TTAA 5 cut(s) 189, 206, 759, 926, 953
Tru9I TTAA 5 cut(s) 189, 206, 759, 926, 953
TscAI CASTG 1 cut(s) 486
TspDTI ATGAA 3 cut(s) 83, 539, 672
TspRI CASTG 1 cut(s) 486
Tth111I GACNNNGTC 1 cut(s) 853
VpaK11BI GGWCC 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 552
XmiI GTMKAC 1 cut(s) 919
XmnI GAANNNNTTC 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.