FvH4_4g29740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010343
Physical Location & Seq
Reverse (-)
29755311 .. 29758923
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29740.t1

Sequence Viewer

Length: 876 bp
ATGATGAGCCTCCTCTTACGATTACACTCGCACACTTCTCCTAGGTCTTCTTCTTCTTTCATCAGAAGCCTCTCTTTCTTATCAACCCACCCAATACCACAACCACCCCTTAAGCCCTCTCAACTCTTAAATCCTCCTCCTCCTTCTTCTTCTTTGATTGGTTTCTCTCCTAAACCCAGACCCACTATATTTTCTCCCTCTACCCTTCGCTTCCTGACCACCCAATCCTCTGAGGATTTCGACGATTACCAAGATGATAACTTTTTAGGTGAAGAAACAGAAGAGGGAGGAACATCAGATGGATGGGAAGAAGGGAATAGTACAGATGGTTGGGAGGACGAGGATGTCGCCGAGCCTATGGTTGGTGATGGAGGCGATGGCGGTGGAGTGGTGTTCCATGGTGTTCCCTGGGGTGAGCGGGCACTGTCCATTGCTCGTGAGGTGTTGGCACAGTTTTTTGATGACATGAAGCTCTTCTCTTTCAAGACTACTCCTCGAGGATATGTGTTTGTGAGACTGGACAAACTATCAAACGAATATGGGTGTCCAAGCATGGAGGAGCTTGGACGCTACAGTAAAGAATACAAGAGAAAGTTGGATGATGTTGGAGCACTTGGAGAAATACCTGAAGATTTGGCTGTTGAGGTATCATCTCCTGGTGCGGAGAGGTTACTAAAGGTACCAGATGATTTACCTCGGTTTAAAGACAAGGCCTTGAGAGTATGCTATTTAGAAGATGTGGATTCTAAACGCCCAGAAAAGGATGGGGTATTTATGCTGGAGTCTGTTGAGACAGAGTCAGAGAGCTGTGTGTGGAAGTTGGCAAATGTGAAGGAAAACAGGGATCCAGACAGCAAAGATGCAAAGGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

292

Amino Acids

32.41

Weight (kDa)

4.6

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7912 PF25498 224 - 286 1.3e-22 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AbsI CCTCGAGG 1 cut(s) 495
Acc65I GGTACC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 679
AccBSI CCGCTC 1 cut(s) 418
AciI CCGC 3 cut(s) 381, 418, 662
AclWI GGATC 2 cut(s) 839, 852
AcuI CTGAAG 1 cut(s) 648
AfaI GTAC 2 cut(s) 322, 681
AfiI CCNNNNNNNGG 2 cut(s) 362, 760
AflII CTTAAG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 484
AjnI CCWGG 2 cut(s) 407, 655
AluBI AGCT 3 cut(s) 472, 562, 807
AluI AGCT 3 cut(s) 472, 562, 807
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 2 cut(s) 508, 785
AlwI GGATC 2 cut(s) 839, 852
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 1 cut(s) 711
Asp700I GAANNNNTTC 1 cut(s) 473
Asp718I GGTACC 1 cut(s) 679
AspA2I CCTAGG 1 cut(s) 41
AsuHPI GGTGA 3 cut(s) 281, 377, 425
AvaI CYCGRG 1 cut(s) 495
AvrII CCTAGG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 424
BamHI GGATCC 1 cut(s) 844
BanI GGYRCC 1 cut(s) 679
BauI CACGAG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 613
BccI CCATC 6 cut(s) 293, 297, 320, 362, 371, 758
BciT130I CCWGG 2 cut(s) 409, 657
BcoDI GTCTC 2 cut(s) 508, 785
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 571
BfrI CTTAAG 1 cut(s) 110
BlnI CCTAGG 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 409, 657
BmeT110I CYCGRG 1 cut(s) 495
BmiI GGNNCC 2 cut(s) 681, 846
BmrFI CCNGG 2 cut(s) 409, 657
BmsI GCATC 1 cut(s) 850
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 800
BpuEI CTTGAG 1 cut(s) 736
BsaJI CCNNGG 5 cut(s) 41, 397, 407, 408, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 760
Bse1I ACTGG 1 cut(s) 522
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 2 cut(s) 409, 657
BseDI CCNNGG 5 cut(s) 41, 397, 407, 408, 695
BseGI GGATG 4 cut(s) 308, 349, 604, 769
BseLI CCNNNNNNNGG 2 cut(s) 362, 760
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 4 cut(s) 126, 129, 483, 572
BseSI GKGCMC 1 cut(s) 424
BshFI GGCC 1 cut(s) 713
BshNI GGYRCC 1 cut(s) 679
BsiHKAI GWGCWC 1 cut(s) 613
BsiHKCI CYCGRG 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 362, 760
BsmAI GTCTC 2 cut(s) 508, 785
BsnI GGCC 1 cut(s) 713
BsoBI CYCGRG 1 cut(s) 495
Bsp1286I GDGCHC 2 cut(s) 424, 613
Bsp143I GATC 1 cut(s) 844
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 3 cut(s) 381, 418, 662
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 681, 846
BspPI GGATC 2 cut(s) 839, 852
BspQI GCTCTTC 1 cut(s) 479
BspT107I GGYRCC 1 cut(s) 679
BspTI CTTAAG 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 1 cut(s) 522
BssECI CCNNGG 5 cut(s) 41, 397, 407, 408, 695
BssMI GATC 1 cut(s) 844
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 41, 397
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 409, 657
Bst4CI ACNGT 3 cut(s) 426, 453, 575
Bst6I CTCTTC 2 cut(s) 276, 479
BstAFI CTTAAG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 4 cut(s) 308, 349, 604, 769
BstKTI GATC 1 cut(s) 847
BstMAI GTCTC 2 cut(s) 508, 785
BstMBI GATC 1 cut(s) 844
BstNI CCWGG 2 cut(s) 409, 657
BstSCI CCNGG 2 cut(s) 407, 655
BstSFI CTRYAG 1 cut(s) 571
BstSLI GKGCMC 1 cut(s) 424
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 844
BstYI RGATCY 1 cut(s) 844
BsuRI GGCC 1 cut(s) 713
BtgI CCRYGG 1 cut(s) 397
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 4 cut(s) 308, 349, 604, 769
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 420
CseI GACGC 1 cut(s) 576
Csp6I GTAC 2 cut(s) 321, 680
CviAII CATG 3 cut(s) 398, 466, 553
CviJI RGCY 9 cut(s) 9, 69, 115, 355, 472, 562, 638, 713, 807
CviKI_1 RGCY 9 cut(s) 9, 69, 115, 355, 472, 562, 638, 713, 807
CviQI GTAC 2 cut(s) 321, 680
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 846
DpnII GATC 1 cut(s) 844
DraI TTTAAA 1 cut(s) 703
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
Eam1104I CTCTTC 2 cut(s) 276, 479
EarI CTCTTC 2 cut(s) 276, 479
Eco130I CCWWGG 2 cut(s) 41, 397
Eco147I AGGCCT 1 cut(s) 713
Eco57I CTGAAG 1 cut(s) 648
Eco88I CYCGRG 1 cut(s) 495
EcoRII CCWGG 2 cut(s) 407, 655
EcoT14I CCWWGG 2 cut(s) 41, 397
ErhI CCWWGG 2 cut(s) 41, 397
FaeI CATG 3 cut(s) 401, 469, 556
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FatI CATG 3 cut(s) 397, 465, 552
FauI CCCGC 1 cut(s) 411
FokI GGATG 4 cut(s) 315, 356, 611, 776
FspBI CTAG 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 800
HaeIII GGCC 1 cut(s) 713
HgaI GACGC 1 cut(s) 576
Hin1II CATG 3 cut(s) 401, 469, 556
HinfI GANTC 4 cut(s) 743, 782, 797, 869
HphI GGTGA 3 cut(s) 281, 377, 425
Hpy188I TCNGA 4 cut(s) 65, 232, 298, 802
Hpy188III TCNNGA 4 cut(s) 214, 437, 484, 848
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 4 cut(s) 153, 215, 305, 826
HpyCH4III ACNGT 3 cut(s) 426, 453, 575
HpyCH4V TGCA 1 cut(s) 863
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 3 cut(s) 401, 469, 556
KpnI GGTACC 1 cut(s) 683
Kzo9I GATC 1 cut(s) 844
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 2 cut(s) 559, 608
LweI GCATC 1 cut(s) 850
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 669
MalI GATC 1 cut(s) 846
MbiI CCGCTC 1 cut(s) 418
MboI GATC 1 cut(s) 844
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 2 cut(s) 424, 613
MlyI GAGTC 2 cut(s) 791, 806
MmeI TCCRAC 2 cut(s) 576, 586
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 3 cut(s) 111, 128, 702
MspCI CTTAAG 1 cut(s) 110
MspR9I CCNGG 2 cut(s) 409, 657
MvaI CCWGG 2 cut(s) 409, 657
NcoI CCATGG 1 cut(s) 397
NdeII GATC 1 cut(s) 844
NlaIII CATG 3 cut(s) 401, 469, 556
NlaIV GGNNCC 2 cut(s) 681, 846
NmeAIII GCCGAG 1 cut(s) 376
PaeR7I CTCGAG 1 cut(s) 495
PasI CCCWGGG 1 cut(s) 408
PceI AGGCCT 1 cut(s) 713
PciSI GCTCTTC 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 743, 869
PflFI GACNNNGTC 1 cut(s) 796
PleI GAGTC 2 cut(s) 790, 805
PpsI GAGTC 2 cut(s) 790, 805
Psp6I CCWGG 2 cut(s) 407, 655
PspGI CCWGG 2 cut(s) 407, 655
PspN4I GGNNCC 2 cut(s) 681, 846
PspXI VCTCGAGB 1 cut(s) 495
PsuI RGATCY 1 cut(s) 844
PsyI GACNNNGTC 1 cut(s) 796
RsaI GTAC 2 cut(s) 322, 681
RsaNI GTAC 2 cut(s) 321, 680
SapI GCTCTTC 1 cut(s) 479
SaqAI TTAA 3 cut(s) 111, 128, 702
Sau3AI GATC 1 cut(s) 844
SchI GAGTC 2 cut(s) 791, 806
ScrFI CCNGG 2 cut(s) 409, 657
SduI GDGCHC 2 cut(s) 424, 613
SfaNI GCATC 1 cut(s) 850
SfcI CTRYAG 1 cut(s) 571
Sfr274I CTCGAG 1 cut(s) 495
SlaI CTCGAG 1 cut(s) 495
SmlI CTYRAG 3 cut(s) 110, 495, 715
SmoI CTYRAG 3 cut(s) 110, 495, 715
SseBI AGGCCT 1 cut(s) 713
SsiI CCGC 3 cut(s) 381, 418, 662
SspMI CTAG 1 cut(s) 42
StuI AGGCCT 1 cut(s) 713
StyD4I CCNGG 2 cut(s) 407, 655
StyI CCWWGG 2 cut(s) 41, 397
TaaI ACNGT 3 cut(s) 426, 453, 575
TaqI TCGA 2 cut(s) 240, 496
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 2 cut(s) 743, 869
Tru1I TTAA 3 cut(s) 111, 128, 702
Tru9I TTAA 3 cut(s) 111, 128, 702
TscAI CASTG 1 cut(s) 429
TspDTI ATGAA 3 cut(s) 49, 482, 861
TspRI CASTG 1 cut(s) 429
Tth111I GACNNNGTC 1 cut(s) 796
Vha464I CTTAAG 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 495
XmaJI CCTAGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.