Rorug04G0306200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010343
Physical Location & Seq
Reverse (-)
48250207 .. 48250692
486 bp
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UTR
Exon/CDS
Intron
Rorug04G0306200.1

Sequence Viewer

Length: 486 bp
ATGTTGAAAGAGTACTTGGCACAGAATATTGAATGGTGGGATGATGAAGTTTATGGTCAAGGATTCAGAAATGCTATGCGTGCTATTGAAACATTTGGATTCAAAACTACGCTGGATCATTCTGTCAAAGATGGAACTCTCCCTGTGGTTCCACCGGTTGTGATGGGGAAGAAGAAGAAGACCACCACCACCACCACCCCCACTGAGTTAACGAGGAAGAAGACCACCTCTGCTCCAGTAACTGAGTTATTATGGAAGGCGACTAGCAGCACAACTAAATCATTATGGAAGGCCACTGCTGCAACAATTACCAACTTATTATGGAAAGTCACTGCCGCCTGCGAAACACCGCGATTTGTTACTATGGAAGGACACCACCACCACCAGTATCATCAGGGACAAAGCCATAACAACTTACATGTTCCAATGGCCGCATCTCCTACTCTCCTTCTTGTATTTATTGGTATATTAATCGAACACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

161

Amino Acids

18.11

Weight (kDa)

9.38

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 2 - 40 4e-06 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 352
AciI CCGC 3 cut(s) 336, 350, 432
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 429
AfaI GTAC 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 418
AgeI ACCGGT 1 cut(s) 154
AgsI TTSAA 4 cut(s) 7, 32, 89, 103
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 2 cut(s) 291, 429
ApeKI GCWGC 2 cut(s) 267, 299
AseI ATTAAT 1 cut(s) 470
AsiGI ACCGGT 1 cut(s) 154
BbsI GAAGAC 2 cut(s) 185, 227
BbvI GCAGC 2 cut(s) 279, 286
BccI CCATC 2 cut(s) 125, 157
BfaI CTAG 1 cut(s) 264
BisI GCNGC 4 cut(s) 268, 300, 336, 432
BlsI GCNGC 4 cut(s) 269, 301, 337, 433
BmcAI AGTACT 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 150
BmsI GCATC 1 cut(s) 443
BpiI GAAGAC 2 cut(s) 185, 227
BpmI CTGGAG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 236, 385
BseGI GGATG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 195, 234
BseNI ACTGG 2 cut(s) 236, 385
BseXI GCAGC 2 cut(s) 279, 286
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 2 cut(s) 293, 431
BshTI ACCGGT 1 cut(s) 154
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 2 cut(s) 293, 431
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 3 cut(s) 336, 350, 432
BspANI GGCC 2 cut(s) 293, 431
BspCNI CTCAG 2 cut(s) 196, 235
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 2 cut(s) 236, 385
BssAI RCCGGY 1 cut(s) 154
BssMI GATC 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 81, 340
BstDEI CTNAG 2 cut(s) 204, 243
BstF5I GGATG 1 cut(s) 46
BstFNI CGCG 1 cut(s) 352
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 80, 299
BstNSI RCATGY 1 cut(s) 422
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 279, 286
BstV2I GAAGAC 2 cut(s) 185, 227
BsuRI GGCC 2 cut(s) 293, 431
BtsCI GGATG 1 cut(s) 46
BtsI GCAGTG 2 cut(s) 294, 330
BtsIMutI CAGTG 3 cut(s) 201, 294, 330
Cac8I GCNNGC 2 cut(s) 81, 340
CaiI CAGNNNCTG 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 154
Csp6I GTAC 1 cut(s) 13
CspAI ACCGGT 1 cut(s) 154
CviAII CATG 1 cut(s) 419
CviJI RGCY 3 cut(s) 293, 405, 431
CviKI_1 RGCY 3 cut(s) 293, 405, 431
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 204, 243
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 429
FaeI CATG 1 cut(s) 422
FaiI YATR 9 cut(s) 54, 77, 253, 286, 322, 365, 408, 420, 467
FaqI GGGAC 1 cut(s) 411
FatI CATG 1 cut(s) 418
Fnu4HI GCNGC 4 cut(s) 268, 300, 336, 432
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 4 cut(s) 268, 300, 336, 432
FspBI CTAG 1 cut(s) 264
GluI GCNGC 4 cut(s) 268, 300, 336, 432
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 293, 431
HapII CCGG 1 cut(s) 155
Hin1II CATG 1 cut(s) 422
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 2 cut(s) 63, 99
HpaI GTTAAC 1 cut(s) 210
HpaII CCGG 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 4 cut(s) 250, 283, 362, 458
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 299
HpyF3I CTNAG 2 cut(s) 204, 243
Hsp92II CATG 1 cut(s) 422
KspAI GTTAAC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 7 cut(s) 98, 156, 168, 249, 352, 380, 398
Lsp1109I GCAGC 2 cut(s) 279, 286
LweI GCATC 1 cut(s) 443
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 3 cut(s) 238, 328, 358
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 6 cut(s) 181, 184, 187, 190, 229, 232
MluCI AATT 1 cut(s) 306
MnlI CCTC 2 cut(s) 207, 238
MseI TTAA 2 cut(s) 209, 470
MspI CCGG 1 cut(s) 155
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 2 cut(s) 80, 299
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 1 cut(s) 422
PciI ACATGT 1 cut(s) 418
PfeI GAWTC 2 cut(s) 63, 99
PinAI ACCGGT 1 cut(s) 154
PkrI GCNGC 4 cut(s) 269, 301, 337, 433
PscI ACATGT 1 cut(s) 418
PshBI ATTAAT 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 209, 470
SatI GCNGC 4 cut(s) 268, 300, 336, 432
Sau3AI GATC 1 cut(s) 115
ScaI AGTACT 1 cut(s) 14
SetI ASST 1 cut(s) 230
SfaNI GCATC 1 cut(s) 443
Sse9I AATT 1 cut(s) 306
SsiI CCGC 3 cut(s) 336, 350, 432
SspI AATATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 264
TaqI TCGA 1 cut(s) 474
TasI AATT 1 cut(s) 306
TatI WGTACW 1 cut(s) 12
TauI GCSGC 2 cut(s) 338, 434
TfiI GAWTC 2 cut(s) 63, 99
Tru1I TTAA 2 cut(s) 209, 470
Tru9I TTAA 2 cut(s) 209, 470
TscAI CASTG 3 cut(s) 208, 301, 337
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 2 cut(s) 267, 299
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 60
TspRI CASTG 3 cut(s) 208, 301, 337
VspI ATTAAT 1 cut(s) 470
XceI RCATGY 1 cut(s) 422
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.