Prupe.1G289100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010343
Physical Location & Seq
Forward (+)
28836952 .. 28839085
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G289100.1

Sequence Viewer

Length: 957 bp
ATGATGATGAGGAGGAGCCTACAGTTTCTCAGTGTTGGCAGGTGCTTCGCCTCCTCCTCTTCATCTTTCAGAAGCCTTTCTTTCCTATCAGCCCACCCAAAAAGTCCATTACCCTTTCTCCTGAACTCTCCTCCTCCTCTTCCTTCTTCTTCTTCGTCCTATCTTTCTGGTTTGGTTCGTTTGTCTCTTAAATCCTGTCCCACAATATTTCCTTTTCGTACTCTTCGCTTCGTAAACACAGAGTCCTCTGAGGATAATCAAGATGACCCTTTTCAAGGTGAAGAAATTGAAGAGCAAGGGACCTCAGGTGGATGGGAAGAGGGAGACACCACAGATGGTTGGGAGGAAGAGGACGTCGGTGACCCTGAGATTGGCGATGGGGGTGATGGTGGTGGGGTGGTATTGCACGGTGTCCCCTGGGGTGAGCGGGTTCTGTCCATTGCTCATGAGGCCTTAAAGCAATTTGGAGACAATGTCAAGCTCTTTTCTTTCAAGACTACTCCTCGAGGATATGTATATGTGAGACTGGACAAACTGTTAAACGAATATGGTTGTCCCAGCATGGGGGAACTTGAAAGCTACAGTCAAGAATACAAGAAAAGATTAGATGAAGTTGGAGCACTTGGAGAAATACCTGAAAATTTGGCTCTTGAGGTGTCATCTCCGGGTGCAGAGAGGTTACTAAAGATACCGGATGATTTACTTCGGTTCATAGATATGCCTATGAGAGTAAGCTATGTAGAAGATGTGGATTCTAAATGCTGCGAAAAGGAAGGAGTATTCAATCTGGAGACCATCGAGGCAGAGTCTGAGAGCTGTGTGTGGAAGTTGGCAAATGTGAAGGAAAACAGGGACCCGGCTAGCAAAGGCAGACCATTAACACGTAAACAGAGGGATTGGAGATTAAAATTGCCATTTTCAGGGCATAGAAGGGTACTTCTGTATCTAGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

319

Amino Acids

35.66

Weight (kDa)

4.92

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 30
AatII GACGTC 1 cut(s) 357
AbsI CCTCGAGG 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 30
AccBSI CCGCTC 1 cut(s) 427
AciI CCGC 1 cut(s) 427
AcsI RAATTY 1 cut(s) 640
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 2 cut(s) 220, 936
AfiI CCNNNNNNNGG 5 cut(s) 275, 371, 563, 564, 920
AflIII ACRYGT 1 cut(s) 881
AgsI TTSAA 5 cut(s) 275, 290, 493, 575, 784
AjnI CCWGG 1 cut(s) 416
AluBI AGCT 4 cut(s) 481, 579, 735, 816
AluI AGCT 4 cut(s) 481, 579, 735, 816
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 5 cut(s) 189, 318, 462, 517, 785
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 1 cut(s) 762
ApoI RAATTY 1 cut(s) 640
Asp700I GAANNNNTTC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 300, 853
AsuC2I CCSGG 2 cut(s) 666, 857
AsuHPI GGTGA 4 cut(s) 290, 371, 395, 434
AsuNHI GCTAGC 1 cut(s) 860
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 2 cut(s) 300, 853
AxyI CCTNAGG 1 cut(s) 304
BaeI ACNNNNGTAYC 2 cut(s) 926, 926
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 1 cut(s) 749
BccI CCATC 5 cut(s) 306, 329, 371, 380, 803
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 1 cut(s) 418
BcnI CCSGG 2 cut(s) 666, 857
BcoDI GTCTC 5 cut(s) 189, 318, 462, 517, 785
BfaI CTAG 2 cut(s) 861, 947
BfmI CTRYAG 2 cut(s) 20, 580
BfuAI ACCTGC 1 cut(s) 30
BisI GCNGC 1 cut(s) 763
BlsI GCNGC 1 cut(s) 764
Bme1390I CCNGG 3 cut(s) 418, 666, 857
Bme18I GGWCC 2 cut(s) 300, 853
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 300, 853
BmiI GGNNCC 4 cut(s) 17, 301, 854, 855
BmrFI CCNGG 3 cut(s) 418, 666, 857
BmtI GCTAGC 1 cut(s) 864
BpmI CTGGAG 1 cut(s) 809
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 2 cut(s) 666, 857
BsaAI YACGTR 1 cut(s) 884
BsaHI GRCGYC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 785
BsaJI CCNNGG 2 cut(s) 416, 417
BsaWI WCCGGW 1 cut(s) 691
BsaXI ACNNNNNCTCC 4 cut(s) 102, 132, 459, 489
Bsc4I CCNNNNNNNGG 5 cut(s) 275, 371, 563, 564, 920
Bse1I ACTGG 1 cut(s) 531
Bse21I CCTNAGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 2 cut(s) 416, 417
BseGI GGATG 2 cut(s) 317, 700
BseLI CCNNNNNNNGG 5 cut(s) 275, 371, 563, 564, 920
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 5 cut(s) 43, 240, 318, 357, 801
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 8 cut(s) 25, 28, 43, 46, 120, 123, 126, 492
BseXI GCAGC 1 cut(s) 749
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 1 cut(s) 690
BshFI GGCC 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 3 cut(s) 665, 692, 857
BslFI GGGAC 5 cut(s) 183, 313, 398, 540, 866
BslI CCNNNNNNNGG 5 cut(s) 275, 371, 563, 564, 920
BsmAI GTCTC 5 cut(s) 189, 318, 462, 517, 785
BsmFI GGGAC 5 cut(s) 183, 313, 398, 540, 866
BsnI GGCC 1 cut(s) 452
Bso31I GGTCTC 1 cut(s) 785
BsoBI CYCGRG 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 622
BspACI CCGC 1 cut(s) 427
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 5 cut(s) 42, 241, 317, 358, 802
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 4 cut(s) 17, 301, 854, 855
BspMI ACCTGC 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 864
BspQI GCTCTTC 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 785
BsrBI CCGCTC 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 1 cut(s) 531
BssECI CCNNGG 2 cut(s) 416, 417
BssNI GRCGYC 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 4 cut(s) 24, 410, 537, 584
Bst6I CTCTTC 6 cut(s) 64, 144, 228, 285, 312, 342
BstACI GRCGYC 1 cut(s) 354
BstBAI YACGTR 1 cut(s) 884
BstC8I GCNNGC 1 cut(s) 862
BstDEI CTNAG 5 cut(s) 29, 249, 304, 366, 810
BstEII GGTNACC 1 cut(s) 359
BstENI CCTNNNNNAGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 317, 700
BstMAI GTCTC 5 cut(s) 189, 318, 462, 517, 785
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 1 cut(s) 418
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 3 cut(s) 416, 664, 855
BstSFI CTRYAG 2 cut(s) 20, 580
BstV1I GCAGC 1 cut(s) 749
Bsu36I CCTNAGG 1 cut(s) 304
BsuRI GGCC 1 cut(s) 452
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 317, 700
BtsIMutI CAGTG 1 cut(s) 37
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 862
CaiI CAGNNNCTG 1 cut(s) 809
CciI TCATGA 1 cut(s) 445
Cfr13I GGNCC 2 cut(s) 300, 853
Csp6I GTAC 2 cut(s) 219, 935
CviAII CATG 2 cut(s) 446, 562
CviQI GTAC 2 cut(s) 219, 935
DdeI CTNAG 5 cut(s) 29, 249, 304, 366, 810
Eam1104I CTCTTC 6 cut(s) 64, 144, 228, 285, 312, 342
EarI CTCTTC 6 cut(s) 64, 144, 228, 285, 312, 342
Eco147I AGGCCT 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 785
Eco47I GGWCC 2 cut(s) 300, 853
Eco81I CCTNAGG 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 504
Eco91I GGTNACC 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 273
EcoO109I RGGNCCY 2 cut(s) 300, 853
EcoO65I GGTNACC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 416
FaeI CATG 2 cut(s) 449, 565
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FaqI GGGAC 5 cut(s) 183, 313, 398, 540, 866
FatI CATG 2 cut(s) 445, 561
FauI CCCGC 1 cut(s) 420
Fnu4HI GCNGC 1 cut(s) 763
FokI GGATG 2 cut(s) 324, 707
Fsp4HI GCNGC 1 cut(s) 763
FspBI CTAG 2 cut(s) 861, 947
GluI GCNGC 1 cut(s) 763
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 809
HaeIII GGCC 1 cut(s) 452
HapII CCGG 3 cut(s) 665, 692, 857
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 2 cut(s) 449, 565
HinfI GANTC 3 cut(s) 242, 752, 806
HpaII CCGG 3 cut(s) 665, 692, 857
HphI GGTGA 4 cut(s) 290, 371, 395, 434
Hpy166II GTNNAC 2 cut(s) 235, 887
Hpy188I TCNGA 3 cut(s) 71, 250, 811
Hpy188III TCNNGA 8 cut(s) 121, 260, 446, 493, 587, 650, 788, 947
Hpy8I GTNNAC 2 cut(s) 235, 887
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 4 cut(s) 153, 767, 835, 924
HpyCH4III ACNGT 4 cut(s) 24, 410, 537, 584
HpyCH4IV ACGT 2 cut(s) 354, 883
HpyCH4V TGCA 2 cut(s) 406, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 5 cut(s) 29, 249, 304, 366, 810
HpySE526I ACGT 2 cut(s) 354, 883
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 2 cut(s) 449, 565
KflI GGGWCCC 1 cut(s) 853
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 2 cut(s) 15, 617
Lsp1109I GCAGC 1 cut(s) 749
MaeI CTAG 2 cut(s) 861, 947
MaeII ACGT 2 cut(s) 354, 883
MaeIII GTNAC 2 cut(s) 359, 678
MbiI CCGCTC 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 4 cut(s) 285, 461, 640, 908
MlyI GAGTC 2 cut(s) 251, 815
MmeI TCCRAC 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 76
MseI TTAA 5 cut(s) 189, 455, 539, 878, 905
MslI CAYNNNNRTG 1 cut(s) 716
MspI CCGG 3 cut(s) 665, 692, 857
MspR9I CCNGG 3 cut(s) 418, 666, 857
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 449
NciI CCSGG 2 cut(s) 666, 857
NheI GCTAGC 1 cut(s) 860
NlaIII CATG 2 cut(s) 449, 565
NlaIV GGNNCC 4 cut(s) 17, 301, 854, 855
NmuCI GTSAC 1 cut(s) 359
PaeR7I CTCGAG 1 cut(s) 504
PagI TCATGA 1 cut(s) 445
PaqCI CACCTGC 1 cut(s) 30
PasI CCCWGGG 1 cut(s) 417
PceI AGGCCT 1 cut(s) 452
PciSI GCTCTTC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 752
PflFI GACNNNGTC 1 cut(s) 473
PkrI GCNGC 1 cut(s) 764
PleI GAGTC 2 cut(s) 250, 814
PpsI GAGTC 2 cut(s) 250, 814
Ppu21I YACGTR 1 cut(s) 884
PpuMI RGGWCCY 2 cut(s) 300, 853
Psp5II RGGWCCY 2 cut(s) 300, 853
Psp6I CCWGG 1 cut(s) 416
PspEI GGTNACC 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 4 cut(s) 17, 301, 854, 855
PspPI GGNCC 2 cut(s) 300, 853
PspPPI RGGWCCY 2 cut(s) 300, 853
PspXI VCTCGAGB 1 cut(s) 504
PstNI CAGNNNCTG 1 cut(s) 809
PsyI GACNNNGTC 1 cut(s) 473
RsaI GTAC 2 cut(s) 220, 936
RsaNI GTAC 2 cut(s) 219, 935
RseI CAYNNNNRTG 1 cut(s) 716
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 5 cut(s) 189, 455, 539, 878, 905
SatI GCNGC 1 cut(s) 763
Sau96I GGNCC 2 cut(s) 300, 853
SchI GAGTC 2 cut(s) 251, 815
ScrFI CCNGG 3 cut(s) 418, 666, 857
SduI GDGCHC 1 cut(s) 622
SfcI CTRYAG 2 cut(s) 20, 580
Sfr274I CTCGAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 300, 853
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 504, 650
SmoI CTYRAG 2 cut(s) 504, 650
Sse9I AATT 4 cut(s) 285, 461, 640, 908
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 1 cut(s) 427
SspI AATATT 1 cut(s) 207
SspMI CTAG 2 cut(s) 861, 947
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 3 cut(s) 416, 664, 855
TaaI ACNGT 4 cut(s) 24, 410, 537, 584
TaiI ACGT 2 cut(s) 357, 886
TaqI TCGA 2 cut(s) 505, 798
TasI AATT 4 cut(s) 285, 461, 640, 908
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 5 cut(s) 189, 455, 539, 878, 905
Tru9I TTAA 5 cut(s) 189, 455, 539, 878, 905
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 1 cut(s) 762
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 3 cut(s) 51, 624, 700
TspRI CASTG 1 cut(s) 37
Tth111I GACNNNGTC 1 cut(s) 473
VpaK11BI GGWCC 2 cut(s) 300, 853
XagI CCTNNNNNAGG 1 cut(s) 273
XapI RAATTY 1 cut(s) 640
XbaI TCTAGA 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 2 cut(s) 861, 947
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.