Rh4DG363600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010343
Physical Location & Seq
Reverse (-)
58488204 .. 58490415
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG363600.1

Sequence Viewer

Length: 987 bp
ATGCTCTTAGCTTCTTCTCTCGTTGCAGAGACAAGAATGATGAACCTCCTCCTACAATTACACTTGCAAACTGCTCGAAGGTGTATCACATCTTCTTCTTCTTCTTTCAGAAGAAACTCTTTCTTATCAACCCACCCAATACAACAACCTCTTAAACCCTCTCAACACTTAAACCCTCCTCATTCTTCTTTGATTGGTTTCTCTCCTAAACCCAGACCCACAATATTTTCTCCCGCTACTCTTCGATTCCTAACAACCCAGTCCTCTGAGGACCTCGACGATTACCAAGATGACACCTTTCAAGGTGAAGAAACAGAAGAGGGAGGAACATCAGATGGATGGGAAGAAGGAGATAGTACAGATGGTTGGGAGGACGAGGATGTCGCCGAGCCTAAGGTTGGTGATGGAGGCGATGGTGGTGGAGTGGTGTTCCATGGTGTTCCCTGGGGTGAGCAGGCACTGTCCATTGCTCGTGAGGTGTTGACACGGTTCTGTGATGACATGAAGCTCTTCTCTTTCAAGACTACTCCTCGAGGATATGTGTTTGTGAGACTGGACAAACTATCAAACGAATATGGATGTCCAAGTATGGAAGACCTTGGGCGCTACAGTAAAGAATACAAGAAAAGGTTGGATGAAGTTGGAGCACTTGGAGAAATACCCGAAGATTTGGCTGTTGAGGTATCATCTCCTGGCGCGGAGAGATTACTAAAGGTACCAGGTGATTTACCTCGTTTTAAAGACAAGACCATGAGAGTATGCTATTTAGAAGACGTGGATTCTAAACACCCAGAAAAGGATGGAGTATTTATGCTGGAGTCTGTTGAGACAGAGTCAGAGAGCTGTGTGTGGAAGTTGGCAAATGTGAAGGAAAACAGAGATCCGGACAGCAAAGGTAGACCATTAACACGTAAACAGACAGATTGGAGATTAAAATTGCCATTTTCTGCGCATAAAAGGGTACTTCTGTACCTAAACTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

328

Amino Acids

36.87

Weight (kDa)

5.13

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7912 PF25498 236 - 324 5.3e-37 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AbsI CCTCGAGG 1 cut(s) 531
Acc16I TGCGCA 1 cut(s) 951
Acc65I GGTACC 1 cut(s) 715
AccB1I GGYRCC 1 cut(s) 715
AccI GTMKAC 1 cut(s) 898
AccII CGCG 1 cut(s) 698
AccIII TCCGGA 1 cut(s) 883
AciI CCGC 2 cut(s) 234, 698
AclWI GGATC 1 cut(s) 875
AfaI GTAC 4 cut(s) 358, 717, 963, 971
AfiI CCNNNNNNNGG 2 cut(s) 398, 796
AflIII ACRYGT 1 cut(s) 908
AgsI TTSAA 2 cut(s) 302, 520
AjiI CACGTC 1 cut(s) 775
AjnI CCWGG 3 cut(s) 443, 691, 718
AluBI AGCT 3 cut(s) 11, 508, 843
AluI AGCT 3 cut(s) 11, 508, 843
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 3 cut(s) 23, 544, 821
AlwI GGATC 1 cut(s) 875
AlwNI CAGNNNCTG 1 cut(s) 460
Ama87I CYCGRG 1 cut(s) 531
Aor13HI TCCGGA 1 cut(s) 883
Asp700I GAANNNNTTC 1 cut(s) 509
Asp718I GGTACC 1 cut(s) 715
AspLEI GCGC 3 cut(s) 606, 698, 952
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 4 cut(s) 317, 413, 461, 734
AvaI CYCGRG 1 cut(s) 531
AvaII GGWCC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 393
BaeI ACNNNNGTAYC 4 cut(s) 953, 953, 986, 986
BanI GGYRCC 1 cut(s) 715
BarI GAAGNNNNNNTAC 2 cut(s) 76, 108
BauI CACGAG 1 cut(s) 471
BbsI GAAGAC 2 cut(s) 600, 777
Bbv12I GWGCWC 1 cut(s) 649
BccI CCATC 6 cut(s) 329, 333, 356, 398, 407, 794
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 3 cut(s) 445, 693, 720
BcoDI GTCTC 3 cut(s) 23, 544, 821
BfmI CTRYAG 1 cut(s) 607
BfoI RGCGCY 1 cut(s) 607
Bme1390I CCNGG 3 cut(s) 445, 693, 720
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 531
BmgBI CACGTC 1 cut(s) 775
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 3 cut(s) 445, 693, 720
BmrI ACTGGG 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 2 cut(s) 600, 777
BpmI CTGGAG 1 cut(s) 836
BpuEI CTTGAG 1 cut(s) 964
BsaAI YACGTR 1 cut(s) 911
BsaJI CCNNGG 4 cut(s) 433, 443, 444, 598
BsaWI WCCGGW 1 cut(s) 883
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 796
Bse1I ACTGG 2 cut(s) 259, 558
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 883
BseBI CCWGG 3 cut(s) 445, 693, 720
BseDI CCNNGG 4 cut(s) 433, 443, 444, 598
BseGI GGATG 5 cut(s) 344, 385, 584, 640, 805
BseLI CCNNNNNNNGG 2 cut(s) 398, 796
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 259, 558
BseRI GAGGAG 3 cut(s) 38, 168, 519
Bsh1236I CGCG 1 cut(s) 698
BshNI GGYRCC 1 cut(s) 715
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 531
BsiSI CCGG 1 cut(s) 884
BslI CCNNNNNNNGG 2 cut(s) 398, 796
BsmAI GTCTC 3 cut(s) 23, 544, 821
BsoBI CYCGRG 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 649
Bsp13I TCCGGA 1 cut(s) 883
Bsp143I GATC 1 cut(s) 880
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 2 cut(s) 234, 698
BspCNI CTCAG 1 cut(s) 259
BspEI TCCGGA 1 cut(s) 883
BspFNI CGCG 1 cut(s) 698
BspLI GGNNCC 1 cut(s) 717
BspPI GGATC 1 cut(s) 875
BspQI GCTCTTC 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 2 cut(s) 259, 558
BssECI CCNNGG 4 cut(s) 433, 443, 444, 598
BssMI GATC 1 cut(s) 880
BssSI CACGAG 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 433, 598
Bst2BI CACGAG 1 cut(s) 471
Bst2UI CCWGG 3 cut(s) 445, 693, 720
Bst4CI ACNGT 3 cut(s) 462, 489, 611
Bst6I CTCTTC 3 cut(s) 246, 312, 515
BstBAI YACGTR 1 cut(s) 911
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 3 cut(s) 7, 267, 393
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 5 cut(s) 344, 385, 584, 640, 805
BstFNI CGCG 1 cut(s) 698
BstH2I RGCGCY 1 cut(s) 607
BstHHI GCGC 3 cut(s) 606, 698, 952
BstKTI GATC 1 cut(s) 883
BstMAI GTCTC 3 cut(s) 23, 544, 821
BstMBI GATC 1 cut(s) 880
BstNI CCWGG 3 cut(s) 445, 693, 720
BstSCI CCNGG 3 cut(s) 443, 691, 718
BstSFI CTRYAG 1 cut(s) 607
BstUI CGCG 1 cut(s) 698
BstV2I GAAGAC 2 cut(s) 600, 777
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
Bsu36I CCTNAGG 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 433
BtgZI GCGATG 1 cut(s) 426
BtrI CACGTC 1 cut(s) 775
BtsCI GGATG 5 cut(s) 344, 385, 584, 640, 805
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 456
CaiI CAGNNNCTG 1 cut(s) 460
CfoI GCGC 3 cut(s) 606, 698, 952
Cfr13I GGNCC 1 cut(s) 271
CsiI ACCWGGT 1 cut(s) 718
Csp6I GTAC 4 cut(s) 357, 716, 962, 970
CviAII CATG 3 cut(s) 434, 502, 751
CviJI RGCY 5 cut(s) 11, 391, 508, 674, 843
CviKI_1 RGCY 5 cut(s) 11, 391, 508, 674, 843
CviQI GTAC 4 cut(s) 357, 716, 962, 970
DdeI CTNAG 3 cut(s) 7, 267, 393
DpnI GATC 1 cut(s) 882
DpnII GATC 1 cut(s) 880
DraI TTTAAA 1 cut(s) 739
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 3 cut(s) 246, 312, 515
EarI CTCTTC 3 cut(s) 246, 312, 515
Eco130I CCWWGG 2 cut(s) 433, 598
Eco47I GGWCC 1 cut(s) 271
Eco81I CCTNAGG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 3 cut(s) 443, 691, 718
EcoT14I CCWWGG 2 cut(s) 433, 598
ErhI CCWWGG 2 cut(s) 433, 598
FaeI CATG 3 cut(s) 437, 505, 754
FaiI YATR 9 cut(s) 435, 503, 540, 576, 590, 752, 760, 812, 954
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FatI CATG 3 cut(s) 433, 501, 750
FauI CCCGC 1 cut(s) 241
FblI GTMKAC 1 cut(s) 898
FokI GGATG 5 cut(s) 351, 392, 591, 647, 812
FspI TGCGCA 1 cut(s) 951
GlaI GCGC 3 cut(s) 605, 697, 951
GsuI CTGGAG 1 cut(s) 836
HaeII RGCGCY 1 cut(s) 607
HapII CCGG 1 cut(s) 884
HhaI GCGC 3 cut(s) 606, 698, 952
Hin1II CATG 3 cut(s) 437, 505, 754
Hin6I GCGC 3 cut(s) 604, 696, 950
HinP1I GCGC 3 cut(s) 604, 696, 950
HincII GTYRAC 1 cut(s) 483
HindII GTYRAC 1 cut(s) 483
HinfI GANTC 4 cut(s) 246, 779, 818, 833
HpaII CCGG 1 cut(s) 884
HphI GGTGA 4 cut(s) 317, 413, 461, 734
Hpy166II GTNNAC 3 cut(s) 483, 899, 914
Hpy188I TCNGA 4 cut(s) 110, 268, 334, 838
Hpy188III TCNNGA 3 cut(s) 473, 520, 884
Hpy8I GTNNAC 3 cut(s) 483, 899, 914
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 72, 341, 862
HpyCH4III ACNGT 3 cut(s) 462, 489, 611
HpyCH4IV ACGT 2 cut(s) 774, 910
HpyCH4V TGCA 2 cut(s) 26, 67
HpyF3I CTNAG 3 cut(s) 7, 267, 393
HpySE526I ACGT 2 cut(s) 774, 910
Hsp92II CATG 3 cut(s) 437, 505, 754
HspAI GCGC 3 cut(s) 604, 696, 950
Kpn2I TCCGGA 1 cut(s) 883
KpnI GGTACC 1 cut(s) 719
Kzo9I GATC 1 cut(s) 880
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 1 cut(s) 644
MabI ACCWGGT 1 cut(s) 718
MaeII ACGT 2 cut(s) 774, 910
MalI GATC 1 cut(s) 882
MboI GATC 1 cut(s) 880
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 2 cut(s) 56, 935
MlyI GAGTC 2 cut(s) 827, 842
MmeI TCCRAC 2 cut(s) 612, 622
MroI TCCGGA 1 cut(s) 883
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 5 cut(s) 153, 170, 738, 905, 932
MspI CCGG 1 cut(s) 884
MspR9I CCNGG 3 cut(s) 445, 693, 720
MvaI CCWGG 3 cut(s) 445, 693, 720
MvnI CGCG 1 cut(s) 698
NcoI CCATGG 1 cut(s) 433
NdeII GATC 1 cut(s) 880
NlaIII CATG 3 cut(s) 437, 505, 754
NlaIV GGNNCC 1 cut(s) 717
NmeAIII GCCGAG 1 cut(s) 412
NsbI TGCGCA 1 cut(s) 951
PaeR7I CTCGAG 1 cut(s) 531
PasI CCCWGGG 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 2 cut(s) 246, 779
PflFI GACNNNGTC 1 cut(s) 832
PleI GAGTC 2 cut(s) 826, 841
PpsI GAGTC 2 cut(s) 826, 841
Ppu21I YACGTR 1 cut(s) 911
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 3 cut(s) 443, 691, 718
PspGI CCWGG 3 cut(s) 443, 691, 718
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 531
PstNI CAGNNNCTG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 880
PsyI GACNNNGTC 1 cut(s) 832
RsaI GTAC 4 cut(s) 358, 717, 963, 971
RsaNI GTAC 4 cut(s) 357, 716, 962, 970
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 5 cut(s) 153, 170, 738, 905, 932
Sau3AI GATC 1 cut(s) 880
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 2 cut(s) 827, 842
ScrFI CCNGG 3 cut(s) 445, 693, 720
SduI GDGCHC 1 cut(s) 649
SexAI ACCWGGT 1 cut(s) 718
SfcI CTRYAG 1 cut(s) 607
Sfr274I CTCGAG 1 cut(s) 531
SinI GGWCC 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 531
SmlI CTYRAG 2 cut(s) 531, 979
SmoI CTYRAG 2 cut(s) 531, 979
Sse9I AATT 2 cut(s) 56, 935
SsiI CCGC 2 cut(s) 234, 698
SspI AATATT 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 443, 691, 718
StyI CCWWGG 2 cut(s) 433, 598
TaaI ACNGT 3 cut(s) 462, 489, 611
TaiI ACGT 2 cut(s) 777, 913
TaqI TCGA 4 cut(s) 76, 244, 276, 532
TasI AATT 2 cut(s) 56, 935
TatI WGTACW 1 cut(s) 356
TfiI GAWTC 2 cut(s) 246, 779
Tru1I TTAA 5 cut(s) 153, 170, 738, 905, 932
Tru9I TTAA 5 cut(s) 153, 170, 738, 905, 932
TscAI CASTG 1 cut(s) 465
TspDTI ATGAA 3 cut(s) 56, 518, 651
TspRI CASTG 1 cut(s) 465
Tth111I GACNNNGTC 1 cut(s) 832
VpaK11BI GGWCC 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 531
XmiI GTMKAC 1 cut(s) 898
XmnI GAANNNNTTC 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.