Rw0G011490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00507
OG0010343
Physical Location & Seq
Forward (+)
15635 .. 18495
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011490.1

Sequence Viewer

Length: 921 bp
ATGCTCTTAGCTTCTTCTCTCGTTGCAGAGACAAGAATGATGAACCTCCTCCTACAATTACACTCGCAAACTGCTCGAAGGTGTATCACATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCAGAAGCCTCTCTTTCTTATCAACCCACCCAATACAACAACCTCTTAAACCCTCTCAACACTTAAACCCTCCTCATTCTTCTTTGATTGGTTTCTCTCCTAAACCCAGACCCACAATATTTTCTCCCGCTACTCTTCGATTCCTAACAACCCAGTCCTCTGAGGACCTCGCCGATTACCAAGATGACACCTTTCAAGGTGAAGAAACAGAAGAGGGAGGAACATCAGATGGATGGGAAGAAGGAGATAGTACAGATGGTTGGGAGGATGAGGATGTCGCCGAGCCTAAGGTTGGTGATGGAGGCGATGGTGGTGGAGTGGTGTTCCATGGTGTTCCCTGGGGTGAGCGGGCACTGTCCATTGCTTGTGAGGTGTTGACACGGTTCTGCGATGACATGAAGCTCTTCTCTTTCAAGACTACTCCTCGAGGATATGTGTTTGTGAGACTGGACAAACTATCAAACGAATATGGATGTCCAAGTATGGAAGACCTTGGGCGCTACAGTAAAGAATACAAGAAAAGGTTGGATGAAGTTGGAGCACTTGGAGAAATACCCAAAGATTTGGCTGTTGAGGTATCATCTCCTGGCGCTGAGAGATTACTAAAGGTACCAGGTGATTTACCTCGGTTTAAAGACAAGACCATGAGAGTGTGCTATTTAGAAGACGTGGATTCTAAACACCCAGAAAAGGATGGAGTATTTATGCTGGAGTCTGTTGAGACAGAGTCAGAGAGCTGTGTGTGGAAGTTGGCAAATGTGAAGGAAAACAGGGATCCGGACAGCAAAGATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

306

Amino Acids

33.85

Weight (kDa)

4.79

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7912 PF25498 242 - 304 9.7e-23 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 549
Acc65I GGTACC 1 cut(s) 733
AccB1I GGYRCC 1 cut(s) 733
AccBSI CCGCTC 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 901
AciI CCGC 2 cut(s) 252, 472
AclWI GGATC 2 cut(s) 893, 906
AfaI GTAC 2 cut(s) 376, 735
AfiI CCNNNNNNNGG 2 cut(s) 416, 814
AgsI TTSAA 2 cut(s) 320, 538
AjiI CACGTC 1 cut(s) 793
AjnI CCWGG 3 cut(s) 461, 709, 736
AluBI AGCT 3 cut(s) 11, 526, 861
AluI AGCT 3 cut(s) 11, 526, 861
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 3 cut(s) 23, 562, 839
AlwI GGATC 2 cut(s) 893, 906
Ama87I CYCGRG 1 cut(s) 549
Aor13HI TCCGGA 1 cut(s) 901
Asp700I GAANNNNTTC 1 cut(s) 527
Asp718I GGTACC 1 cut(s) 733
AspLEI GCGC 2 cut(s) 624, 716
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 4 cut(s) 335, 431, 479, 752
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 1 cut(s) 289
AxyI CCTNAGG 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 478
BamHI GGATCC 1 cut(s) 898
BanI GGYRCC 1 cut(s) 733
BarI GAAGNNNNNNTAC 2 cut(s) 76, 108
BbsI GAAGAC 2 cut(s) 618, 795
Bbv12I GWGCWC 1 cut(s) 667
BccI CCATC 6 cut(s) 347, 351, 374, 416, 425, 812
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 3 cut(s) 463, 711, 738
BcoDI GTCTC 3 cut(s) 23, 562, 839
BfmI CTRYAG 1 cut(s) 625
BfoI RGCGCY 2 cut(s) 625, 717
Bme1390I CCNGG 3 cut(s) 463, 711, 738
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 549
BmgBI CACGTC 1 cut(s) 793
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 735, 900
BmrFI CCNGG 3 cut(s) 463, 711, 738
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 904
BmuI ACTGGG 1 cut(s) 271
BpiI GAAGAC 2 cut(s) 618, 795
BpmI CTGGAG 1 cut(s) 854
BsaJI CCNNGG 5 cut(s) 451, 461, 462, 616, 749
BsaWI WCCGGW 1 cut(s) 901
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 814
Bse1I ACTGG 2 cut(s) 277, 576
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 483
BseAI TCCGGA 1 cut(s) 901
BseBI CCWGG 3 cut(s) 463, 711, 738
BseDI CCNNGG 5 cut(s) 451, 461, 462, 616, 749
BseGI GGATG 6 cut(s) 362, 397, 403, 602, 658, 823
BseLI CCNNNNNNNGG 2 cut(s) 416, 814
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 2 cut(s) 276, 708
BseNI ACTGG 2 cut(s) 277, 576
BseRI GAGGAG 3 cut(s) 38, 186, 537
BseSI GKGCMC 1 cut(s) 478
BshNI GGYRCC 1 cut(s) 733
BsiHKAI GWGCWC 1 cut(s) 667
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 1 cut(s) 902
BslI CCNNNNNNNGG 2 cut(s) 416, 814
BsmAI GTCTC 3 cut(s) 23, 562, 839
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 478, 667
Bsp13I TCCGGA 1 cut(s) 901
Bsp143I GATC 1 cut(s) 898
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 2 cut(s) 252, 472
BspCNI CTCAG 2 cut(s) 277, 709
BspEI TCCGGA 1 cut(s) 901
BspLI GGNNCC 2 cut(s) 735, 900
BspPI GGATC 2 cut(s) 893, 906
BspQI GCTCTTC 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 733
BsrBI CCGCTC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 2 cut(s) 277, 576
BssECI CCNNGG 5 cut(s) 451, 461, 462, 616, 749
BssMI GATC 1 cut(s) 898
BssT1I CCWWGG 2 cut(s) 451, 616
Bst2UI CCWGG 3 cut(s) 463, 711, 738
Bst4CI ACNGT 3 cut(s) 480, 507, 629
Bst6I CTCTTC 3 cut(s) 264, 330, 533
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 4 cut(s) 7, 285, 411, 717
BstDSI CCRYGG 1 cut(s) 451
BstF5I GGATG 6 cut(s) 362, 397, 403, 602, 658, 823
BstH2I RGCGCY 2 cut(s) 625, 717
BstHHI GCGC 2 cut(s) 624, 716
BstKTI GATC 1 cut(s) 901
BstMAI GTCTC 3 cut(s) 23, 562, 839
BstMBI GATC 1 cut(s) 898
BstNI CCWGG 3 cut(s) 463, 711, 738
BstSCI CCNGG 3 cut(s) 461, 709, 736
BstSFI CTRYAG 1 cut(s) 625
BstSLI GKGCMC 1 cut(s) 478
BstV2I GAAGAC 2 cut(s) 618, 795
BstX2I RGATCY 1 cut(s) 898
BstXI CCANNNNNNTGG 1 cut(s) 688
BstYI RGATCY 1 cut(s) 898
Bsu36I CCTNAGG 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 451
BtgZI GCGATG 2 cut(s) 444, 528
BtrI CACGTC 1 cut(s) 793
BtsCI GGATG 6 cut(s) 362, 397, 403, 602, 658, 823
BtsIMutI CAGTG 1 cut(s) 476
Cac8I GCNNGC 1 cut(s) 474
CfoI GCGC 2 cut(s) 624, 716
Cfr13I GGNCC 1 cut(s) 289
CsiI ACCWGGT 1 cut(s) 736
Csp6I GTAC 2 cut(s) 375, 734
CviAII CATG 4 cut(s) 452, 520, 769, 918
CviJI RGCY 6 cut(s) 11, 132, 409, 526, 692, 861
CviKI_1 RGCY 6 cut(s) 11, 132, 409, 526, 692, 861
CviQI GTAC 2 cut(s) 375, 734
DdeI CTNAG 4 cut(s) 7, 285, 411, 717
DpnI GATC 1 cut(s) 900
DpnII GATC 1 cut(s) 898
DraI TTTAAA 1 cut(s) 757
Eam1104I CTCTTC 3 cut(s) 264, 330, 533
EarI CTCTTC 3 cut(s) 264, 330, 533
Eco130I CCWWGG 2 cut(s) 451, 616
Eco47I GGWCC 1 cut(s) 289
Eco81I CCTNAGG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 3 cut(s) 461, 709, 736
EcoT14I CCWWGG 2 cut(s) 451, 616
EcoT22I ATGCAT 1 cut(s) 919
ErhI CCWWGG 2 cut(s) 451, 616
FaeI CATG 4 cut(s) 455, 523, 772, 921
FaiI YATR 8 cut(s) 453, 521, 558, 594, 608, 770, 830, 919
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FatI CATG 4 cut(s) 451, 519, 768, 917
FauI CCCGC 2 cut(s) 259, 465
FokI GGATG 6 cut(s) 369, 404, 410, 609, 665, 830
GlaI GCGC 2 cut(s) 623, 715
GsuI CTGGAG 1 cut(s) 854
HaeII RGCGCY 2 cut(s) 625, 717
HapII CCGG 1 cut(s) 902
HhaI GCGC 2 cut(s) 624, 716
Hin1II CATG 4 cut(s) 455, 523, 772, 921
Hin6I GCGC 2 cut(s) 622, 714
HinP1I GCGC 2 cut(s) 622, 714
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HinfI GANTC 4 cut(s) 264, 797, 836, 851
HpaII CCGG 1 cut(s) 902
HphI GGTGA 4 cut(s) 335, 431, 479, 752
Hpy166II GTNNAC 1 cut(s) 501
Hpy188I TCNGA 4 cut(s) 128, 286, 352, 856
Hpy188III TCNNGA 2 cut(s) 538, 902
Hpy8I GTNNAC 1 cut(s) 501
HpyAV CCTTC 3 cut(s) 72, 359, 880
HpyCH4III ACNGT 3 cut(s) 480, 507, 629
HpyCH4IV ACGT 1 cut(s) 792
HpyCH4V TGCA 2 cut(s) 26, 917
HpyF3I CTNAG 4 cut(s) 7, 285, 411, 717
HpySE526I ACGT 1 cut(s) 792
Hsp92II CATG 4 cut(s) 455, 523, 772, 921
HspAI GCGC 2 cut(s) 622, 714
Kpn2I TCCGGA 1 cut(s) 901
KpnI GGTACC 1 cut(s) 737
Kzo9I GATC 1 cut(s) 898
LguI GCTCTTC 1 cut(s) 533
LmnI GCTCC 1 cut(s) 662
LweI GCATC 1 cut(s) 904
MabI ACCWGGT 1 cut(s) 736
MaeII ACGT 1 cut(s) 792
MalI GATC 1 cut(s) 900
MbiI CCGCTC 1 cut(s) 472
MboI GATC 1 cut(s) 898
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 2 cut(s) 478, 667
MluCI AATT 1 cut(s) 56
MlyI GAGTC 2 cut(s) 845, 860
MmeI TCCRAC 2 cut(s) 630, 640
Mph1103I ATGCAT 1 cut(s) 919
MroI TCCGGA 1 cut(s) 901
MroXI GAANNNNTTC 1 cut(s) 527
MseI TTAA 3 cut(s) 171, 188, 756
MslI CAYNNNNRTG 1 cut(s) 773
MspI CCGG 1 cut(s) 902
MspR9I CCNGG 3 cut(s) 463, 711, 738
MvaI CCWGG 3 cut(s) 463, 711, 738
NcoI CCATGG 1 cut(s) 451
NdeII GATC 1 cut(s) 898
NlaIII CATG 4 cut(s) 455, 523, 772, 921
NlaIV GGNNCC 2 cut(s) 735, 900
NmeAIII GCCGAG 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 919
PaeR7I CTCGAG 1 cut(s) 549
PasI CCCWGGG 1 cut(s) 462
PciSI GCTCTTC 1 cut(s) 533
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 264, 797
PflFI GACNNNGTC 1 cut(s) 850
PleI GAGTC 2 cut(s) 844, 859
PpsI GAGTC 2 cut(s) 844, 859
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 3 cut(s) 461, 709, 736
PspGI CCWGG 3 cut(s) 461, 709, 736
PspN4I GGNNCC 2 cut(s) 735, 900
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PspXI VCTCGAGB 1 cut(s) 549
PsuI RGATCY 1 cut(s) 898
PsyI GACNNNGTC 1 cut(s) 850
RsaI GTAC 2 cut(s) 376, 735
RsaNI GTAC 2 cut(s) 375, 734
RseI CAYNNNNRTG 1 cut(s) 773
SapI GCTCTTC 1 cut(s) 533
SaqAI TTAA 3 cut(s) 171, 188, 756
Sau3AI GATC 1 cut(s) 898
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 2 cut(s) 845, 860
ScrFI CCNGG 3 cut(s) 463, 711, 738
SduI GDGCHC 2 cut(s) 478, 667
SexAI ACCWGGT 1 cut(s) 736
SfaNI GCATC 1 cut(s) 904
SfcI CTRYAG 1 cut(s) 625
Sfr274I CTCGAG 1 cut(s) 549
SinI GGWCC 1 cut(s) 289
SlaI CTCGAG 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 773
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
Sse9I AATT 1 cut(s) 56
SsiI CCGC 2 cut(s) 252, 472
SspI AATATT 1 cut(s) 243
StyD4I CCNGG 3 cut(s) 461, 709, 736
StyI CCWWGG 2 cut(s) 451, 616
TaaI ACNGT 3 cut(s) 480, 507, 629
TaiI ACGT 1 cut(s) 795
TaqI TCGA 3 cut(s) 76, 262, 550
TasI AATT 1 cut(s) 56
TatI WGTACW 1 cut(s) 374
TfiI GAWTC 2 cut(s) 264, 797
Tru1I TTAA 3 cut(s) 171, 188, 756
Tru9I TTAA 3 cut(s) 171, 188, 756
TscAI CASTG 1 cut(s) 483
TspDTI ATGAA 3 cut(s) 56, 536, 669
TspRI CASTG 1 cut(s) 483
Tth111I GACNNNGTC 1 cut(s) 850
VpaK11BI GGWCC 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 527
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.