Rh4AG357800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010343
Physical Location & Seq
Reverse (-)
66809319 .. 66813189
3871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG357800.1

Sequence Viewer

Length: 963 bp
ATGCTCTTAGCTTCTTCTCTCGTTGCAGAGACAAGAATGATGAACCTCCTCCTACAATTACACTTGCAAACTGCTCGAAGGTGTATCACATCTTCTTCTTCTTCTTTCAGAAGAAACTCTTTCTTATCAACCCACCCAATACAACAACCTCTTAAACCCTCTCAACACTTAAACCCTCCTCATTCTTCTTTGATTGGTTTCTCTCCTAAACCCAGACCCACAATATTTTCTCCCGCTACTCTTCGATTCCTAACAACCCAGTCCTCTGAGGACCTCGACGATTACCAAGATGACACCTTTCAAGGTGAAGAAACAGAGGAGGGAGGAACATCAGATGGATGGGAAGAAGGAGATAGTACAGATGGTTGGGAGGACGAGGATGTCGCCGAGCCTAAGGTTGGTGATGGAGGCGATGGTGGTGGAGTGGTGTTCCATGGTGTTCCCTGGGGTGAGCAGGCACTGTCCATTGCTCGTGAGGTGTTGACACGGTTCTGTGATGACATGAAGCTCTTCTCTTTCAAGACTACTCCTCGAGGATATGTGTTTGTGAGACTGGACAAACTATCAAACGAATATGGATGTCCAAGTATGGAAGACCTTGGGCGCTACAGTAAAGAATACAAGAAAAGGTTGGATGAAGTTGGAGCACTTGGAGAAATACCCGAAGATTTGGCTGTTGAGGTATCATCTCCTGGCGCGGAGAGATTACTAAAGGTACCAGGTGATTTACCTCGTTTTAAAGACAAGACCATGAGAGTATGCTATTTAGAAGACGTGGATTCTAAACACCCAGAAAAGGATGGAGTATTTATGCTGGAGTCTGTTGAGACAGAGTCAGAGAGCTGTGTGTGGAAGTTGGCAAATGTGAAGGAAAACAGAGATCCGGACAGCAAAGACGAGGCAGGTCCATATCATCATGCTAGCAATTATGGAGCTGCAAAAAGGATCAGTGATTCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

320

Amino Acids

35.67

Weight (kDa)

4.87

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7912 PF25498 236 - 298 8.6e-23 Domain of unknown function (DUF7912)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AbsI CCTCGAGG 1 cut(s) 531
Acc36I ACCTGC 1 cut(s) 893
Acc65I GGTACC 1 cut(s) 715
AccB1I GGYRCC 1 cut(s) 715
AccII CGCG 1 cut(s) 698
AccIII TCCGGA 1 cut(s) 883
AciI CCGC 2 cut(s) 234, 698
AclWI GGATC 2 cut(s) 875, 953
AfaI GTAC 2 cut(s) 358, 717
AfiI CCNNNNNNNGG 2 cut(s) 398, 796
AgsI TTSAA 2 cut(s) 302, 520
AjiI CACGTC 1 cut(s) 775
AjnI CCWGG 3 cut(s) 443, 691, 718
AluBI AGCT 4 cut(s) 11, 508, 843, 935
AluI AGCT 4 cut(s) 11, 508, 843, 935
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 3 cut(s) 23, 544, 821
AlwI GGATC 2 cut(s) 875, 953
AlwNI CAGNNNCTG 1 cut(s) 460
Ama87I CYCGRG 1 cut(s) 531
Aor13HI TCCGGA 1 cut(s) 883
ApeKI GCWGC 1 cut(s) 935
Asp700I GAANNNNTTC 1 cut(s) 509
Asp718I GGTACC 1 cut(s) 715
AspLEI GCGC 2 cut(s) 606, 698
AspS9I GGNCC 2 cut(s) 271, 905
AsuHPI GGTGA 4 cut(s) 317, 413, 461, 734
AsuNHI GCTAGC 1 cut(s) 920
AvaI CYCGRG 1 cut(s) 531
AvaII GGWCC 2 cut(s) 271, 905
AxyI CCTNAGG 1 cut(s) 393
BanI GGYRCC 1 cut(s) 715
BarI GAAGNNNNNNTAC 2 cut(s) 76, 108
BauI CACGAG 1 cut(s) 471
BbsI GAAGAC 2 cut(s) 600, 777
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 1 cut(s) 922
BccI CCATC 6 cut(s) 329, 333, 356, 398, 407, 794
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 3 cut(s) 445, 693, 720
BcoDI GTCTC 3 cut(s) 23, 544, 821
BfaI CTAG 1 cut(s) 921
BfmI CTRYAG 1 cut(s) 607
BfoI RGCGCY 1 cut(s) 607
BfuAI ACCTGC 1 cut(s) 893
BisI GCNGC 1 cut(s) 936
BlsI GCNGC 1 cut(s) 937
Bme1390I CCNGG 3 cut(s) 445, 693, 720
Bme18I GGWCC 2 cut(s) 271, 905
BmeT110I CYCGRG 1 cut(s) 531
BmgBI CACGTC 1 cut(s) 775
BmgT120I GGNCC 2 cut(s) 271, 905
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 3 cut(s) 445, 693, 720
BmrI ACTGGG 1 cut(s) 253
BmtI GCTAGC 1 cut(s) 924
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 2 cut(s) 600, 777
BpmI CTGGAG 1 cut(s) 836
BsaJI CCNNGG 4 cut(s) 433, 443, 444, 598
BsaWI WCCGGW 1 cut(s) 883
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 796
Bse1I ACTGG 2 cut(s) 259, 558
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 883
BseBI CCWGG 3 cut(s) 445, 693, 720
BseDI CCNNGG 4 cut(s) 433, 443, 444, 598
BseGI GGATG 5 cut(s) 344, 385, 584, 640, 805
BseLI CCNNNNNNNGG 2 cut(s) 398, 796
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 259, 558
BseRI GAGGAG 4 cut(s) 38, 168, 332, 519
BseXI GCAGC 1 cut(s) 922
Bsh1236I CGCG 1 cut(s) 698
BshNI GGYRCC 1 cut(s) 715
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 531
BsiSI CCGG 1 cut(s) 884
BslI CCNNNNNNNGG 2 cut(s) 398, 796
BsmAI GTCTC 3 cut(s) 23, 544, 821
BsoBI CYCGRG 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 649
Bsp13I TCCGGA 1 cut(s) 883
Bsp143I GATC 2 cut(s) 880, 945
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 2 cut(s) 234, 698
BspCNI CTCAG 1 cut(s) 259
BspEI TCCGGA 1 cut(s) 883
BspFNI CGCG 1 cut(s) 698
BspLI GGNNCC 1 cut(s) 717
BspMI ACCTGC 1 cut(s) 893
BspOI GCTAGC 1 cut(s) 924
BspPI GGATC 2 cut(s) 875, 953
BspQI GCTCTTC 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 2 cut(s) 259, 558
BssECI CCNNGG 4 cut(s) 433, 443, 444, 598
BssMI GATC 2 cut(s) 880, 945
BssSI CACGAG 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 433, 598
Bst2BI CACGAG 1 cut(s) 471
Bst2UI CCWGG 3 cut(s) 445, 693, 720
Bst4CI ACNGT 3 cut(s) 462, 489, 611
Bst6I CTCTTC 2 cut(s) 246, 515
BstC8I GCNNGC 2 cut(s) 456, 922
BstDEI CTNAG 3 cut(s) 7, 267, 393
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 5 cut(s) 344, 385, 584, 640, 805
BstFNI CGCG 1 cut(s) 698
BstH2I RGCGCY 1 cut(s) 607
BstHHI GCGC 2 cut(s) 606, 698
BstKTI GATC 2 cut(s) 883, 948
BstMAI GTCTC 3 cut(s) 23, 544, 821
BstMBI GATC 2 cut(s) 880, 945
BstNI CCWGG 3 cut(s) 445, 693, 720
BstSCI CCNGG 3 cut(s) 443, 691, 718
BstSFI CTRYAG 1 cut(s) 607
BstUI CGCG 1 cut(s) 698
BstV1I GCAGC 1 cut(s) 922
BstV2I GAAGAC 2 cut(s) 600, 777
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
Bsu36I CCTNAGG 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 433
BtgZI GCGATG 1 cut(s) 426
BtrI CACGTC 1 cut(s) 775
BtsCI GGATG 5 cut(s) 344, 385, 584, 640, 805
BtsIMutI CAGTG 2 cut(s) 458, 955
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 2 cut(s) 456, 922
CaiI CAGNNNCTG 1 cut(s) 460
CfoI GCGC 2 cut(s) 606, 698
Cfr13I GGNCC 2 cut(s) 271, 905
CsiI ACCWGGT 1 cut(s) 718
Csp6I GTAC 2 cut(s) 357, 716
CviAII CATG 4 cut(s) 434, 502, 751, 917
CviJI RGCY 6 cut(s) 11, 391, 508, 674, 843, 935
CviKI_1 RGCY 6 cut(s) 11, 391, 508, 674, 843, 935
CviQI GTAC 2 cut(s) 357, 716
DdeI CTNAG 3 cut(s) 7, 267, 393
DpnI GATC 2 cut(s) 882, 947
DpnII GATC 2 cut(s) 880, 945
DraI TTTAAA 1 cut(s) 739
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 246, 515
EarI CTCTTC 2 cut(s) 246, 515
Eco130I CCWWGG 2 cut(s) 433, 598
Eco47I GGWCC 2 cut(s) 271, 905
Eco81I CCTNAGG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 3 cut(s) 443, 691, 718
EcoT14I CCWWGG 2 cut(s) 433, 598
ErhI CCWWGG 2 cut(s) 433, 598
FaeI CATG 4 cut(s) 437, 505, 754, 920
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FatI CATG 4 cut(s) 433, 501, 750, 916
FauI CCCGC 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 936
FokI GGATG 5 cut(s) 351, 392, 591, 647, 812
Fsp4HI GCNGC 1 cut(s) 936
FspBI CTAG 1 cut(s) 921
GlaI GCGC 2 cut(s) 605, 697
GluI GCNGC 1 cut(s) 936
GsuI CTGGAG 1 cut(s) 836
HaeII RGCGCY 1 cut(s) 607
HapII CCGG 1 cut(s) 884
HhaI GCGC 2 cut(s) 606, 698
Hin1II CATG 4 cut(s) 437, 505, 754, 920
Hin6I GCGC 2 cut(s) 604, 696
HinP1I GCGC 2 cut(s) 604, 696
HincII GTYRAC 1 cut(s) 483
HindII GTYRAC 1 cut(s) 483
HinfI GANTC 5 cut(s) 246, 779, 818, 833, 953
HpaII CCGG 1 cut(s) 884
HphI GGTGA 4 cut(s) 317, 413, 461, 734
Hpy166II GTNNAC 1 cut(s) 483
Hpy188I TCNGA 4 cut(s) 110, 268, 334, 838
Hpy188III TCNNGA 3 cut(s) 473, 520, 884
Hpy8I GTNNAC 1 cut(s) 483
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 72, 341, 862
HpyCH4III ACNGT 3 cut(s) 462, 489, 611
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 3 cut(s) 26, 67, 938
HpyF3I CTNAG 3 cut(s) 7, 267, 393
HpySE526I ACGT 1 cut(s) 774
Hsp92II CATG 4 cut(s) 437, 505, 754, 920
HspAI GCGC 2 cut(s) 604, 696
Kpn2I TCCGGA 1 cut(s) 883
KpnI GGTACC 1 cut(s) 719
Kzo9I GATC 2 cut(s) 880, 945
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 2 cut(s) 644, 932
Lsp1109I GCAGC 1 cut(s) 922
MabI ACCWGGT 1 cut(s) 718
MaeI CTAG 1 cut(s) 921
MaeII ACGT 1 cut(s) 774
MalI GATC 2 cut(s) 882, 947
MboI GATC 2 cut(s) 880, 945
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 2 cut(s) 56, 925
MlyI GAGTC 2 cut(s) 827, 842
MmeI TCCRAC 2 cut(s) 612, 622
MroI TCCGGA 1 cut(s) 883
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 4 cut(s) 153, 170, 738, 961
MspI CCGG 1 cut(s) 884
MspR9I CCNGG 3 cut(s) 445, 693, 720
MvaI CCWGG 3 cut(s) 445, 693, 720
MvnI CGCG 1 cut(s) 698
NcoI CCATGG 1 cut(s) 433
NdeII GATC 2 cut(s) 880, 945
NheI GCTAGC 1 cut(s) 920
NlaIII CATG 4 cut(s) 437, 505, 754, 920
NlaIV GGNNCC 1 cut(s) 717
NmeAIII GCCGAG 1 cut(s) 412
PaeR7I CTCGAG 1 cut(s) 531
PasI CCCWGGG 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 3 cut(s) 246, 779, 953
PflFI GACNNNGTC 1 cut(s) 832
PkrI GCNGC 1 cut(s) 937
PleI GAGTC 2 cut(s) 826, 841
PpsI GAGTC 2 cut(s) 826, 841
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 3 cut(s) 443, 691, 718
PspGI CCWGG 3 cut(s) 443, 691, 718
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 2 cut(s) 271, 905
PspPPI RGGWCCY 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 531
PstNI CAGNNNCTG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 880
PsyI GACNNNGTC 1 cut(s) 832
RsaI GTAC 2 cut(s) 358, 717
RsaNI GTAC 2 cut(s) 357, 716
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 4 cut(s) 153, 170, 738, 961
SatI GCNGC 1 cut(s) 936
Sau3AI GATC 2 cut(s) 880, 945
Sau96I GGNCC 2 cut(s) 271, 905
SchI GAGTC 2 cut(s) 827, 842
ScrFI CCNGG 3 cut(s) 445, 693, 720
SduI GDGCHC 1 cut(s) 649
SexAI ACCWGGT 1 cut(s) 718
SfcI CTRYAG 1 cut(s) 607
Sfr274I CTCGAG 1 cut(s) 531
SinI GGWCC 2 cut(s) 271, 905
SlaI CTCGAG 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 531
SmoI CTYRAG 1 cut(s) 531
Sse9I AATT 2 cut(s) 56, 925
SsiI CCGC 2 cut(s) 234, 698
SspI AATATT 1 cut(s) 225
SspMI CTAG 1 cut(s) 921
StyD4I CCNGG 3 cut(s) 443, 691, 718
StyI CCWWGG 2 cut(s) 433, 598
TaaI ACNGT 3 cut(s) 462, 489, 611
TaiI ACGT 1 cut(s) 777
TaqI TCGA 4 cut(s) 76, 244, 276, 532
TasI AATT 2 cut(s) 56, 925
TatI WGTACW 1 cut(s) 356
TfiI GAWTC 3 cut(s) 246, 779, 953
Tru1I TTAA 4 cut(s) 153, 170, 738, 961
Tru9I TTAA 4 cut(s) 153, 170, 738, 961
TscAI CASTG 2 cut(s) 465, 955
TseI GCWGC 1 cut(s) 935
TspDTI ATGAA 3 cut(s) 56, 518, 651
TspRI CASTG 2 cut(s) 465, 955
Tth111I GACNNNGTC 1 cut(s) 832
VpaK11BI GGWCC 2 cut(s) 271, 905
XhoI CTCGAG 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.