AT1G70650

zinc finger

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
26638075 .. 26642268
4194 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70650.1

Sequence Viewer

Length: 1401 bp
ATGTTGAGATTCTTCAAGACCGACCATAGATTGTTCCATCGAATCATCGGGTACACAAGACCATTCCACGGTCTAGCTAAAACCCAAAACGCTGAGATCGCTAGACCAGGTTTGGTTGATCCAAGCTCGCACCCGTGGCCCGAGTGGCTAGATTTAATGGGGATGCTAGCTAAAAAAGGTTACTTTGAAGAAAGCTTGATTCCATTGATGAGTTCCAAGGAATCTAATCATATTCGTACAGCTTGTCTCAATTTCGCCCGCCATCGTTTCACTCTCGTCAGAAACTTGTCGAAGAAAGATATCAAAGTGATTGCTGGGTGTGGATGTCCAAGCACTGATAGGAAGGTCGTGAACTCAGGAAAGCGTCTAAGAGCTTATGTGGGCATTGATGAAGGAAATGTGTGTGGCTCCTGCAACTTGAGAGGGAAATGTGAAAGGGCGTATGCACAAGCACGGGATGATGAAGGTGCTCGAACTATAGATGTCATGCGTTTACTGCTAACTTATGGGCTTGATTCCATTTCTCCTACTGTTGAGAATCGTGCCTGTCAAACCAAACTTGTTGAAGATTCTGTGAGGAAGTTGCTCAGAGAAAGTGTAGCGTATAGCTTAACAGATTTTGAATCTGCTGAGACTGAGACAGCTGGAGATGAGCTCCAGCCAAATTCACAGGACATTGATGAAAGAGATCCACGAAAAAGGCCAGGGGATTGGTATTGTACAGAATGCAAGTTTCTAAATTTTGCGAAAAACATAAGATGCTTGCGATGTGATGTTTTTTCTGAGGAAAGGCTTAAACAGTTGAAGGAAGAACAAAAAGATCATCTCCCACTGAAGAAAGGAGATTGGATTTGTCAAACATGTAATTTCCTGAACTTTTCGAAAAACACGAGATGCTTAAGGTGCAAAGACAAGCCTACATTGCGTCAAATCAATCCCGGAGAGTGGGAATGCGAGTCGTGCAATTACATCAATTTTAGAAGAAACTCTATATGTTTGAAGTGTGATCACAAGAGACAAAAGGCTGCAAACGTCACTCCGGATTCAAAGACAGTTGCTGATCGTCAAAGCGGAGTTACAAAGACGTGGAGCTTTGTAGAAGAAGAGAGTGTAAAACGATGCAATGGCGAAGAAGAGGAAGAAGAAGATGGTTTCATGGGATTTCCAGTAGAGGGAGGGAGAAGCAATGTTTCAAAGAGCGCAGAAAAGAGAGAGCAATGGAAGTTGGAGATGACACAGAGAATTAGAAGCAATGGGACTAAAGCGAAAAAAGATGATAATACGAAGAACGAAACAGAGTCAAAATGTTATGATCGGAGAAGAAATGAACTTCTTGGTAACATTAGTGATGATGGAGAGATGGATGATTGGTTTGTTTCAAAACAAGATAGATCGACTTAA

Protein Analysis

466

Amino Acids

53.7

Weight (kDa)

8.46

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 234 - 258 6e-06 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 279 - 303 2.8e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 1039
AciI CCGC 2 cut(s) 259, 1071
AclWI GGATC 2 cut(s) 113, 683
AcsI RAATTY 2 cut(s) 664, 739
AcuI CTGAAG 1 cut(s) 854
AfaI GTAC 3 cut(s) 53, 238, 721
AfiI CCNNNNNNNGG 3 cut(s) 68, 945, 1172
AflII CTTAAG 1 cut(s) 898
AflIII ACRYGT 1 cut(s) 860
AgsI TTSAA 9 cut(s) 16, 188, 566, 623, 805, 1000, 1047, 1194, 1380
AjiI CACGTC 1 cut(s) 1086
AjnI CCWGG 2 cut(s) 106, 703
Alw21I GWGCWC 2 cut(s) 472, 657
Alw26I GTCTC 4 cut(s) 251, 626, 632, 1009
AlwI GGATC 2 cut(s) 113, 683
AlwNI CAGNNNCTG 1 cut(s) 1058
Ama87I CYCGRG 1 cut(s) 140
Aor13HI TCCGGA 1 cut(s) 1039
AoxI GGCC 2 cut(s) 137, 701
ApeKI GCWGC 1 cut(s) 1025
ApoI RAATTY 2 cut(s) 664, 739
AspLEI GCGC 1 cut(s) 1202
AspS9I GGNCC 1 cut(s) 138
AsuC2I CCSGG 1 cut(s) 939
AsuII TTCGAA 1 cut(s) 881
AsuNHI GCTAGC 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 140
BanII GRGCYC 1 cut(s) 657
BauI CACGAG 1 cut(s) 889
Bbv12I GWGCWC 2 cut(s) 472, 657
BbvI GCAGC 1 cut(s) 1012
BccI CCATC 5 cut(s) 45, 270, 1142, 1346, 1354
BciT130I CCWGG 2 cut(s) 108, 705
BclI TGATCA 1 cut(s) 1006
BcnI CCSGG 1 cut(s) 939
BcoDI GTCTC 4 cut(s) 251, 626, 632, 1009
BfaI CTAG 4 cut(s) 74, 102, 149, 167
BfmI CTRYAG 1 cut(s) 477
BfrI CTTAAG 1 cut(s) 898
BglI GCCNNNNNGGC 1 cut(s) 145
BisI GCNGC 1 cut(s) 1026
BlsI GCNGC 1 cut(s) 1027
Bme1390I CCNGG 3 cut(s) 108, 705, 939
BmeT110I CYCGRG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 1086
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 3 cut(s) 108, 705, 939
BmsI GCATC 4 cut(s) 153, 749, 884, 1109
BmtI GCTAGC 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 639, 671
BpmI CTGGAG 2 cut(s) 641, 666
Bpu14I TTCGAA 1 cut(s) 881
BpuEI CTTGAG 1 cut(s) 439
BpuMI CCSGG 1 cut(s) 939
BsaJI CCNNGG 4 cut(s) 67, 134, 216, 704
BsaWI WCCGGW 1 cut(s) 1039
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 945, 1172
Bse1I ACTGG 1 cut(s) 1166
Bse3DI GCAATG 5 cut(s) 920, 1129, 1192, 1223, 1258
BseAI TCCGGA 1 cut(s) 1039
BseBI CCWGG 2 cut(s) 108, 705
BseDI CCNNGG 4 cut(s) 67, 134, 216, 704
BseGI GGATG 4 cut(s) 168, 329, 463, 1369
BseLI CCNNNNNNNGG 3 cut(s) 68, 945, 1172
BseMI GCAATG 5 cut(s) 920, 1129, 1192, 1223, 1258
BseMII CTCAG 6 cut(s) 84, 369, 601, 621, 627, 774
BseNI ACTGG 1 cut(s) 1166
BseXI GCAGC 1 cut(s) 1012
BseYI CCCAGC 1 cut(s) 314
BshFI GGCC 2 cut(s) 139, 703
BsiHKAI GWGCWC 2 cut(s) 472, 657
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 2 cut(s) 939, 1040
BslFI GGGAC 1 cut(s) 1270
BslI CCNNNNNNNGG 3 cut(s) 68, 945, 1172
BsmAI GTCTC 4 cut(s) 251, 626, 632, 1009
BsmFI GGGAC 1 cut(s) 1270
BsmI GAATGC 2 cut(s) 731, 956
BsnI GGCC 2 cut(s) 139, 703
BsoBI CYCGRG 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 881
Bsp1286I GDGCHC 2 cut(s) 472, 657
Bsp13I TCCGGA 1 cut(s) 1039
Bsp1407I TGTACA 1 cut(s) 719
Bsp143I GATC 8 cut(s) 96, 118, 688, 820, 1006, 1060, 1312, 1391
BspACI CCGC 2 cut(s) 259, 1071
BspANI GGCC 2 cut(s) 139, 703
BspCNI CTCAG 6 cut(s) 85, 368, 600, 622, 628, 775
BspEI TCCGGA 1 cut(s) 1039
BspLI GGNNCC 1 cut(s) 409
BspOI GCTAGC 1 cut(s) 170
BspPI GGATC 2 cut(s) 113, 683
BspT104I TTCGAA 1 cut(s) 881
BspTI CTTAAG 1 cut(s) 898
BsrDI GCAATG 5 cut(s) 920, 1129, 1192, 1223, 1258
BsrGI TGTACA 1 cut(s) 719
BsrI ACTGG 1 cut(s) 1166
BssECI CCNNGG 4 cut(s) 67, 134, 216, 704
BssMI GATC 8 cut(s) 96, 118, 688, 820, 1006, 1060, 1312, 1391
BssSI CACGAG 1 cut(s) 889
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 889
Bst2UI CCWGG 2 cut(s) 108, 705
Bst4CI ACNGT 4 cut(s) 71, 532, 801, 1054
Bst6I CTCTTC 2 cut(s) 1098, 1128
BstAFI CTTAAG 1 cut(s) 898
BstAUI TGTACA 1 cut(s) 719
BstBI TTCGAA 1 cut(s) 881
BstC8I GCNNGC 4 cut(s) 128, 168, 259, 764
BstDEI CTNAG 7 cut(s) 93, 355, 368, 587, 630, 636, 783
BstDSI CCRYGG 2 cut(s) 67, 134
BstF5I GGATG 4 cut(s) 168, 329, 463, 1369
BstHHI GCGC 1 cut(s) 1202
BstKTI GATC 8 cut(s) 99, 121, 691, 823, 1009, 1063, 1315, 1394
BstMAI GTCTC 4 cut(s) 251, 626, 632, 1009
BstMBI GATC 8 cut(s) 96, 118, 688, 820, 1006, 1060, 1312, 1391
BstMWI GCNNNNNNNGC 7 cut(s) 98, 136, 145, 496, 903, 922, 960
BstNI CCWGG 2 cut(s) 108, 705
BstNSI RCATGY 1 cut(s) 864
BstSCI CCNGG 3 cut(s) 106, 703, 937
BstSFI CTRYAG 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 1012
BstX2I RGATCY 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 711
BstYI RGATCY 1 cut(s) 688
BsuRI GGCC 2 cut(s) 139, 703
BtgI CCRYGG 2 cut(s) 67, 134
BtgZI GCGATG 1 cut(s) 781
BtrI CACGTC 1 cut(s) 1086
BtsCI GGATG 4 cut(s) 168, 329, 463, 1369
BtsIMutI CAGTG 2 cut(s) 333, 830
Cac8I GCNNGC 4 cut(s) 128, 168, 259, 764
CaiI CAGNNNCTG 1 cut(s) 1058
CfoI GCGC 1 cut(s) 1202
Cfr13I GGNCC 1 cut(s) 138
CseI GACGC 2 cut(s) 353, 914
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 3 cut(s) 52, 237, 720
CviAII CATG 3 cut(s) 487, 861, 1156
CviQI GTAC 3 cut(s) 52, 237, 720
DdeI CTNAG 7 cut(s) 93, 355, 368, 587, 630, 636, 783
DpnI GATC 8 cut(s) 98, 120, 690, 822, 1008, 1062, 1314, 1393
DpnII GATC 8 cut(s) 96, 118, 688, 820, 1006, 1060, 1312, 1391
Eam1104I CTCTTC 2 cut(s) 1098, 1128
EarI CTCTTC 2 cut(s) 1098, 1128
Ecl136II GAGCTC 1 cut(s) 655
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 657
Eco32I GATATC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 655
Eco57I CTGAAG 1 cut(s) 854
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 655
EcoRII CCWGG 2 cut(s) 106, 703
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 3 cut(s) 490, 864, 1159
FaqI GGGAC 1 cut(s) 1270
FatI CATG 3 cut(s) 486, 860, 1155
FauI CCCGC 1 cut(s) 266
FbaI TGATCA 1 cut(s) 1006
Fnu4HI GCNGC 1 cut(s) 1026
FokI GGATG 4 cut(s) 175, 336, 470, 1376
FriOI GRGCYC 1 cut(s) 657
Fsp4HI GCNGC 1 cut(s) 1026
FspBI CTAG 4 cut(s) 74, 102, 149, 167
GlaI GCGC 1 cut(s) 1201
GluI GCNGC 1 cut(s) 1026
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 2 cut(s) 641, 666
HaeIII GGCC 2 cut(s) 139, 703
HapII CCGG 2 cut(s) 939, 1040
HgaI GACGC 2 cut(s) 353, 914
HhaI GCGC 1 cut(s) 1202
Hin1II CATG 3 cut(s) 490, 864, 1159
Hin6I GCGC 1 cut(s) 1200
HinP1I GCGC 1 cut(s) 1200
HindIII AAGCTT 1 cut(s) 193
HpaII CCGG 2 cut(s) 939, 1040
Hpy166II GTNNAC 3 cut(s) 54, 352, 494
Hpy188I TCNGA 4 cut(s) 281, 590, 784, 1317
Hpy188III TCNNGA 5 cut(s) 16, 349, 357, 871, 1040
Hpy8I GTNNAC 3 cut(s) 54, 352, 494
HpyAV CCTTC 4 cut(s) 337, 386, 458, 799
HpyCH4III ACNGT 4 cut(s) 71, 532, 801, 1054
HpyCH4IV ACGT 2 cut(s) 1032, 1085
HpyCH4V TGCA 7 cut(s) 414, 446, 729, 906, 963, 1028, 1122
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 136, 145, 496, 903, 922, 960
HpyF3I CTNAG 7 cut(s) 93, 355, 368, 587, 630, 636, 783
HpySE526I ACGT 2 cut(s) 1032, 1085
Hsp92II CATG 3 cut(s) 490, 864, 1159
HspAI GCGC 1 cut(s) 1200
Kpn2I TCCGGA 1 cut(s) 1039
Ksp22I TGATCA 1 cut(s) 1006
Kzo9I GATC 8 cut(s) 96, 118, 688, 820, 1006, 1060, 1312, 1391
LmnI GCTCC 3 cut(s) 413, 660, 1089
Lsp1109I GCAGC 1 cut(s) 1012
LweI GCATC 4 cut(s) 153, 749, 884, 1109
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 4 cut(s) 74, 102, 149, 167
MaeII ACGT 2 cut(s) 1032, 1085
MaeIII GTNAC 4 cut(s) 179, 1033, 1075, 1337
MalI GATC 8 cut(s) 98, 120, 690, 822, 1008, 1062, 1314, 1393
MboI GATC 8 cut(s) 96, 118, 688, 820, 1006, 1060, 1312, 1391
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 2 cut(s) 472, 657
MluCI AATT 7 cut(s) 250, 664, 739, 865, 964, 973, 1242
MlyI GAGTC 2 cut(s) 965, 1307
MmeI TCCRAC 1 cut(s) 1206
MnlI CCTC 6 cut(s) 416, 570, 778, 1129, 1165, 1169
MroI TCCGGA 1 cut(s) 1039
MseI TTAA 5 cut(s) 155, 611, 795, 899, 1399
MspA1I CMGCKG 1 cut(s) 644
MspCI CTTAAG 1 cut(s) 898
MspI CCGG 2 cut(s) 939, 1040
MspR9I CCNGG 3 cut(s) 108, 705, 939
Mva1269I GAATGC 2 cut(s) 731, 956
MvaI CCWGG 2 cut(s) 108, 705
MwoI GCNNNNNNNGC 7 cut(s) 98, 136, 145, 496, 903, 922, 960
NciI CCSGG 1 cut(s) 939
NdeII GATC 8 cut(s) 96, 118, 688, 820, 1006, 1060, 1312, 1391
NheI GCTAGC 1 cut(s) 166
NlaIII CATG 3 cut(s) 490, 864, 1159
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 1033
NspI RCATGY 1 cut(s) 864
NspV TTCGAA 1 cut(s) 881
PciI ACATGT 1 cut(s) 860
PcsI WCGNNNNNNNCGW 1 cut(s) 887
PctI GAATGC 2 cut(s) 731, 956
PfeI GAWTC 9 cut(s) 9, 42, 199, 221, 515, 538, 569, 623, 1043
PfoI TCCNGGA 1 cut(s) 937
PkrI GCNGC 1 cut(s) 1027
PleI GAGTC 2 cut(s) 964, 1306
PpsI GAGTC 2 cut(s) 964, 1306
PscI ACATGT 1 cut(s) 860
Psp124BI GAGCTC 1 cut(s) 657
Psp6I CCWGG 2 cut(s) 106, 703
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 2 cut(s) 106, 703
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 1058
PsuI RGATCY 1 cut(s) 688
PvuII CAGCTG 1 cut(s) 644
RsaI GTAC 3 cut(s) 53, 238, 721
RsaNI GTAC 3 cut(s) 52, 237, 720
SacI GAGCTC 1 cut(s) 657
SaqAI TTAA 5 cut(s) 155, 611, 795, 899, 1399
SatI GCNGC 1 cut(s) 1026
Sau3AI GATC 8 cut(s) 96, 118, 688, 820, 1006, 1060, 1312, 1391
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 2 cut(s) 965, 1307
ScrFI CCNGG 3 cut(s) 108, 705, 939
SduI GDGCHC 2 cut(s) 472, 657
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 4 cut(s) 153, 749, 884, 1109
SfcI CTRYAG 1 cut(s) 477
SfuI TTCGAA 1 cut(s) 881
SmlI CTYRAG 2 cut(s) 418, 898
SmoI CTYRAG 2 cut(s) 418, 898
Sse9I AATT 7 cut(s) 250, 664, 739, 865, 964, 973, 1242
SsiI CCGC 2 cut(s) 259, 1071
SspMI CTAG 4 cut(s) 74, 102, 149, 167
SstI GAGCTC 1 cut(s) 657
StyD4I CCNGG 3 cut(s) 106, 703, 937
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 4 cut(s) 71, 532, 801, 1054
TaiI ACGT 2 cut(s) 1035, 1088
TaqI TCGA 5 cut(s) 40, 290, 472, 881, 1394
TaqII GACCGA 1 cut(s) 35
TasI AATT 7 cut(s) 250, 664, 739, 865, 964, 973, 1242
TatI WGTACW 1 cut(s) 719
TfiI GAWTC 9 cut(s) 9, 42, 199, 221, 515, 538, 569, 623, 1043
Tru1I TTAA 5 cut(s) 155, 611, 795, 899, 1399
Tru9I TTAA 5 cut(s) 155, 611, 795, 899, 1399
TscAI CASTG 2 cut(s) 340, 837
TseFI GTSAC 1 cut(s) 1033
TseI GCWGC 1 cut(s) 1025
Tsp45I GTSAC 1 cut(s) 1033
TspDTI ATGAA 5 cut(s) 405, 477, 696, 1144, 1341
TspRI CASTG 2 cut(s) 340, 837
Vha464I CTTAAG 1 cut(s) 898
XapI RAATTY 2 cut(s) 664, 739
XceI RCATGY 1 cut(s) 864
XspI CTAG 4 cut(s) 74, 102, 149, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.