Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006313

Physical Location & Seq

Genomic Coordinates Forward (+)

1192950 .. 1193438

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTGTGCTTAAAATGCGATCATAAAAGGCCTAAGGCAGCACATTCTTCAGAGGCTTCTGCTGAACCTGTACACGACAACGGAAGCTACCCTAGGACTAAGAGTTTGAGTTCTCCTCACACTACTGAGACGAGTCAATATGGACGAAGTCGAACTAGAGGTGCGGATAAGTGGAGATTTGTAAACGAAGAAGAAGACGACTGCAATCGCCCGAACTCATGGAATGAGGCTTCCGGGTTGGTAGATTTTCCCATCGCAGGAGGTAGGACCGAGTTGTCTCAGAATCCGAAAAAAAGGGACTTGTGGAAGTTGAAGATGTTAGAGAGGAGCAAAAGCGCCTTGACGAATAAGGCAAACAATAACGAATCCAGTGTCAATATTCCAAAACGATTGGAGCTTTCTGATTCCACCGACGATGAAGAAATGTCAGAGTGGTTTGGGGATGGGAAACTGGAAACACCAAGGCTCCCATCATTAGGTCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con zf-RanBP

Protein Analysis

163

Amino Acids

18.26

Weight (kDa)

6.91

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70650 AT1G70650
fragaria_vesca	FvH4_4g33730
malus_domestica	MD13G1029300.v1.1
prunus_persica	Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1
pyrus_communis	pycom13g01790 pycom16g01760
rosa_chinensis	RchiOBHm_Chr4g0443241
rosa_laevigata	RLG00000005943 RLG00000005947
rosa_multiflora	Rmu_co8168196.1_g000001 Rmu_sc0007238.1_g000005 Rmu_sc0007968.1_g000002 Rmu_sc0018919.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383810
rosa_rugosa	Rorug04G0344700 Rorug04G0345000
rosa_samantha	Rh4AG399700 Rh4BG411400 Rh4BG411500 Rh4CG426800 Rh4DG406600
rosa_wichuraiana	Rw4G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
AciI	CCGC	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	257, 476
AgsI	TTSAA	1 cut(s)	313
AluBI	AGCT	2 cut(s)	87, 397
AluI	AGCT	2 cut(s)	87, 397
Alw26I	GTCTC	2 cut(s)	122, 282
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	38
ArsI	GACNNNNNNTTYG	4 cut(s)	88, 120, 357, 389
AspA2I	CCTAGG	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	267
AvrII	CCTAGG	1 cut(s)	92
AxyI	CCTNAGG	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	3 cut(s)	260, 437, 478
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	122, 282
BfaI	CTAG	2 cut(s)	93, 156
BfoI	RGCGCY	1 cut(s)	339
BisI	GCNGC	1 cut(s)	39
BlnI	CCTAGG	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	201
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpuMI	CCSGG	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	92, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 476
Bse1I	ACTGG	2 cut(s)	369, 456
Bse21I	CCTNAGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	92, 461
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	2 cut(s)	257, 476
BseMII	CTCAG	2 cut(s)	117, 293
BseNI	ACTGG	2 cut(s)	369, 456
BseRI	GAGGAG	2 cut(s)	105, 340
BseXI	GCAGC	1 cut(s)	50
BshFI	GGCC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	257, 476
BsmAI	GTCTC	2 cut(s)	122, 282
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	118, 292
BspLI	GGNNCC	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	369, 456
BssECI	CCNNGG	2 cut(s)	92, 461
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	2 cut(s)	92, 461
BstAUI	TGTACA	1 cut(s)	70
BstDEI	CTNAG	4 cut(s)	33, 99, 126, 279
BstF5I	GGATG	1 cut(s)	448
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	2 cut(s)	122, 282
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	31
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	376
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	6 cut(s)	31, 56, 87, 230, 397, 466
CviKI_1	RGCY	6 cut(s)	31, 56, 87, 230, 397, 466
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	4 cut(s)	33, 99, 126, 279
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	92, 461
Eco147I	AGGCCT	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	33
EcoT14I	CCWWGG	2 cut(s)	92, 461
ErhI	CCWWGG	2 cut(s)	92, 461
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	1 cut(s)	222
FaiI	YATR	3 cut(s)	24, 141, 220
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	2 cut(s)	93, 156
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	4 cut(s)	133, 283, 365, 404
HpaII	CCGG	1 cut(s)	234
Hpy166II	GTNNAC	2 cut(s)	73, 184
Hpy188I	TCNGA	6 cut(s)	52, 282, 288, 403, 430, 483
Hpy8I	GTNNAC	2 cut(s)	73, 184
Hpy99I	CGWCG	1 cut(s)	416
HpyCH4V	TGCA	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	4 cut(s)	33, 99, 126, 279
Hsp92II	CATG	1 cut(s)	222
HspAI	GCGC	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	3 cut(s)	327, 394, 471
LpnPI	CCDG	5 cut(s)	81, 243, 247, 382, 437
Lsp1109I	GCAGC	1 cut(s)	50
MaeI	CTAG	2 cut(s)	93, 156
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	6 cut(s)	39, 200, 203, 206, 325, 431
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	6 cut(s)	46, 126, 152, 220, 254, 318
MseI	TTAA	1 cut(s)	11
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	15
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	222
NlaIV	GGNNCC	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	31
PfeI	GAWTC	3 cut(s)	283, 365, 404
PflFI	GACNNNGTC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	267
PsyI	GACNNNGTC	1 cut(s)	147
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	6 cut(s)	70, 89, 163, 265, 399, 481
SinI	GGWCC	1 cut(s)	267
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	2 cut(s)	93, 156
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	2 cut(s)	92, 461
TaqI	TCGA	1 cut(s)	151
TaqII	GACCGA	1 cut(s)	284
TatI	WGTACW	1 cut(s)	70
TfiI	GAWTC	3 cut(s)	283, 365, 404
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	267
XmaJI	CCTAGG	1 cut(s)	92
XspI	CTAG	2 cut(s)	93, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.