Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8168196.1

Orthogroup ID

OG0006313

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 670

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8168196.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

gtttttcgttgtgaccaggttattgtcaaggaaagatgtccagattattgcagggtatggatgcccaagcatagacaggaaagttgtcaactcaggaaagcggctaagggcacatgtcggggttgatgaaggagatgtgtgcagctcctgcggtttgagaggcgactgtgagagagcatatgtaaaggcccgtgaagatgaaggtggacgtactgtggatgttatgcgattcttgttaacgcatgggcttgatccccttactgatacattggggaacaagccttctctaaataaaaaggtcaaagaatcagtgagaaggctattgaaagagatggtggagtacagcactgataagcttgataccgatctcccaacgaacatgactttaaaaggggttaaaccctcgccaaaacatgcaatgccacaagaaaagcacaacataaatgttccaatgaagcaaggcgattggatctgccccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con zf-RanBP

Protein Analysis

159

Amino Acids

17.76

Weight (kDa)

9.13

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70650 AT1G70650
fragaria_vesca	FvH4_4g33730
malus_domestica	MD13G1029300.v1.1
prunus_persica	Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1
pyrus_communis	pycom13g01790 pycom16g01760
rosa_chinensis	RchiOBHm_Chr4g0443241
rosa_laevigata	RLG00000005943 RLG00000005947
rosa_multiflora	Rmu_co8168196.1_g000001 Rmu_sc0007238.1_g000005 Rmu_sc0007968.1_g000002 Rmu_sc0018919.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383810
rosa_rugosa	Rorug04G0344700 Rorug04G0345000
rosa_samantha	Rh4AG399700 Rh4BG411400 Rh4BG411500 Rh4CG426800 Rh4DG406600
rosa_wichuraiana	Rw4G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	101, 151
AclWI	GGATC	2 cut(s)	246, 477
AfaI	GTAC	2 cut(s)	212, 342
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	2 cut(s)	145, 356
AluI	AGCT	2 cut(s)	145, 356
AlwI	GGATC	2 cut(s)	246, 477
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	102, 143
BlsI	GCNGC	2 cut(s)	103, 144
Bme1390I	CCNGG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	66, 224
BseJI	GATNNNNATC	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	251, 365, 469
BspACI	CCGC	2 cut(s)	101, 151
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	105
BspPI	GGATC	2 cut(s)	246, 477
BsrDI	GCAATG	1 cut(s)	424
BssMI	GATC	3 cut(s)	251, 365, 469
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	168, 215
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstDEI	CTNAG	2 cut(s)	92, 105
BstF5I	GGATG	2 cut(s)	66, 224
BstKTI	GATC	3 cut(s)	254, 368, 472
BstMBI	GATC	3 cut(s)	251, 365, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	2 cut(s)	117, 417
BstSCI	CCNGG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	66, 224
BtsIMutI	CAGTG	2 cut(s)	316, 346
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	188
CsiI	ACCWGGT	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	211, 341
CviAII	CATG	4 cut(s)	114, 243, 380, 414
CviJI	RGCY	7 cut(s)	104, 145, 189, 248, 281, 320, 356
CviKI_1	RGCY	7 cut(s)	104, 145, 189, 248, 281, 320, 356
CviQI	GTAC	2 cut(s)	211, 341
DdeI	CTNAG	2 cut(s)	92, 105
DpnI	GATC	3 cut(s)	253, 367, 471
DpnII	GATC	3 cut(s)	251, 365, 469
DraI	TTTAAA	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	15
FaeI	CATG	4 cut(s)	117, 246, 383, 417
FatI	CATG	4 cut(s)	113, 242, 379, 413
FauNDI	CATATG	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	102, 143
FokI	GGATG	2 cut(s)	73, 231
Fsp4HI	GCNGC	2 cut(s)	102, 143
GluI	GCNGC	2 cut(s)	102, 143
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	117, 246, 383, 417
HincII	GTYRAC	2 cut(s)	89, 238
HindII	GTYRAC	2 cut(s)	89, 238
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	2 cut(s)	229, 306
HpaI	GTTAAC	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	89, 207, 238
Hpy188III	TCNNGA	2 cut(s)	41, 94
Hpy8I	GTNNAC	3 cut(s)	89, 207, 238
HpyAV	CCTTC	4 cut(s)	123, 195, 292, 310
HpyCH4III	ACNGT	2 cut(s)	168, 215
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	51, 142, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	2 cut(s)	92, 105
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	4 cut(s)	117, 246, 383, 417
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	251, 365, 469
LmnI	GCTCC	1 cut(s)	150
LpnPI	CCDG	7 cut(s)	2, 29, 37, 54, 62, 79, 161
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	51
MabI	ACCWGGT	1 cut(s)	15
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	3 cut(s)	253, 367, 471
MboI	GATC	3 cut(s)	251, 365, 469
MboII	GAAGA	1 cut(s)	207
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	113
MnlI	CCTC	2 cut(s)	153, 413
MseI	TTAA	3 cut(s)	237, 387, 397
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	148
NdeI	CATATG	1 cut(s)	179
NdeII	GATC	3 cut(s)	251, 365, 469
NlaIII	CATG	4 cut(s)	117, 246, 383, 417
NmuCI	GTSAC	1 cut(s)	11
NspI	RCATGY	2 cut(s)	117, 417
PciI	ACATGT	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	229, 306
PkrI	GCNGC	2 cut(s)	103, 144
PscI	ACATGT	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	2 cut(s)	212, 342
RsaNI	GTAC	2 cut(s)	211, 341
SaqAI	TTAA	3 cut(s)	237, 387, 397
SatI	GCNGC	2 cut(s)	102, 143
Sau3AI	GATC	3 cut(s)	251, 365, 469
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	6 cut(s)	21, 147, 206, 212, 301, 358
SexAI	ACCWGGT	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	51
SsiI	CCGC	2 cut(s)	101, 151
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	168, 215
TaiI	ACGT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	229, 306
Tru1I	TTAA	3 cut(s)	237, 387, 397
Tru9I	TTAA	3 cut(s)	237, 387, 397
TscAI	CASTG	2 cut(s)	316, 353
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	3 cut(s)	142, 214, 468
TspRI	CASTG	2 cut(s)	316, 353
XceI	RCATGY	2 cut(s)	117, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.