Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006313

Physical Location & Seq

Genomic Coordinates Forward (+)

1082542 .. 1084512

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01760.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTGCAAGCTTCTCAGAGCCGGCCATGGCACTCTCTATCCTTTCCTCAGAACCCACTTCAAAGCCCCAAATTCCTCTCCCAAATTTCCCAATTTCACAGTTTGCGGCTCCTGCAATTTGAGAGGAGACTGTGAGAGAACATACGTGAAGGCATGGGAAGATGGTGATGTCATGCGTTTCTTGTTAACGTATGGGCTTGATCCCGTTATTGGTACAGTGGAGAACAAGCCATGTCTAAACAAAATGGTCAAAGAATCAGTGAGACGGCTACTGAAACAGATGATAGAGTACAGCACTGAGGACATCGACTCCAATCCCCCCAAAGTGTACAACTACAAGGATAAAGAGGGTCTTCCAATGAAGCCAGGCGACTGGCTTGGCCCCATATGCATCTTCCTAAACTTTGCTAGAAATATCAAGTGCCTTCGTTGTGATGATTTTTCCCAAGAAAGACTGACACGACATAGAGAGGATCAAGAACGTCTTCTGTTGAAGAAGGGGGACTGGATATGTGACAAGTCATGGCTATGTAGATGCTTGCAATGCAAAGAGAAGCCTCCAAACCGGCAGATAAATCCCAGCGAGTGGGAGTGTGACACATCTGTTTTCGTGCAGGTGCAATTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con zf-RanBP

Protein Analysis

210

Amino Acids

24.4

Weight (kDa)

8.65

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70650 AT1G70650
fragaria_vesca	FvH4_4g33730
malus_domestica	MD13G1029300.v1.1
prunus_persica	Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1
pyrus_communis	pycom13g01790 pycom16g01760
rosa_chinensis	RchiOBHm_Chr4g0443241
rosa_laevigata	RLG00000005943 RLG00000005947
rosa_multiflora	Rmu_co8168196.1_g000001 Rmu_sc0007238.1_g000005 Rmu_sc0007968.1_g000002 Rmu_sc0018919.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383810
rosa_rugosa	Rorug04G0344700 Rorug04G0345000
rosa_samantha	Rh4AG399700 Rh4BG411400 Rh4BG411500 Rh4CG426800 Rh4DG406600
rosa_wichuraiana	Rw4G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	604
Acc36I	ACCTGC	1 cut(s)	604
AccB7I	CCANNNNNTGG	1 cut(s)	585
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	2 cut(s)	194, 480
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	2 cut(s)	70, 83
AfaI	GTAC	3 cut(s)	214, 290, 329
AfiI	CCNNNNNNNGG	2 cut(s)	209, 585
AgsI	TTSAA	2 cut(s)	61, 493
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	120, 256
AlwI	GGATC	2 cut(s)	194, 480
AoxI	GGCC	2 cut(s)	22, 379
ApoI	RAATTY	2 cut(s)	70, 83
Asp700I	GAANNNNTTC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	344, 476
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	120, 256
BfaI	CTAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	604
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	109, 382
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	399, 524
BpiI	GAAGAC	2 cut(s)	344, 476
BsaAI	YACGTR	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 585
Bse118I	RCCGGY	2 cut(s)	20, 564
Bse1I	ACTGG	2 cut(s)	377, 509
Bse3DI	GCAATG	1 cut(s)	548
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	209, 585
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	3 cut(s)	28, 61, 288
BseNI	ACTGG	2 cut(s)	377, 509
BseRI	GAGGAG	1 cut(s)	138
BseYI	CCCAGC	1 cut(s)	578
BshFI	GGCC	2 cut(s)	24, 381
BsiSI	CCGG	2 cut(s)	21, 565
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	209, 585
BsmAI	GTCTC	2 cut(s)	120, 256
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	24, 381
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	199, 472
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	2 cut(s)	24, 381
BspCNI	CTCAG	3 cut(s)	27, 60, 289
BspLI	GGNNCC	2 cut(s)	109, 382
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	2 cut(s)	194, 480
BsrDI	GCAATG	1 cut(s)	548
BsrFI	RCCGGY	2 cut(s)	20, 564
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	377, 509
BssAI	RCCGGY	2 cut(s)	20, 564
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	199, 472
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	3 cut(s)	100, 131, 217
BstAUI	TGTACA	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	8, 22, 539
BstDEI	CTNAG	3 cut(s)	14, 47, 297
BstDSI	CCRYGG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	202, 475
BstMAI	GTCTC	2 cut(s)	120, 256
BstMBI	GATC	2 cut(s)	199, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 387, 543
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstV2I	GAAGAC	2 cut(s)	344, 476
BstXI	CCANNNNNNTGG	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	24, 381
BtgI	CCRYGG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	222, 264, 294
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	3 cut(s)	8, 22, 539
Cfr10I	RCCGGY	2 cut(s)	20, 564
Cfr13I	GGNCC	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	213, 289, 328
CviAII	CATG	5 cut(s)	26, 153, 172, 231, 522
CviQI	GTAC	3 cut(s)	213, 289, 328
DdeI	CTNAG	3 cut(s)	14, 47, 297
DpnI	GATC	2 cut(s)	201, 474
DpnII	GATC	2 cut(s)	199, 472
EaeI	YGGCCR	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	5 cut(s)	29, 156, 175, 234, 525
FalI	AAGNNNNNCTT	4 cut(s)	336, 368, 468, 500
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	5 cut(s)	25, 152, 171, 230, 521
FauNDI	CATATG	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	1 cut(s)	106
GsaI	CCCAGC	1 cut(s)	582
HaeIII	GGCC	2 cut(s)	24, 381
HapII	CCGG	2 cut(s)	21, 565
Hin1II	CATG	5 cut(s)	29, 156, 175, 234, 525
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	254, 308
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	2 cut(s)	21, 565
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	186, 328
Hpy188I	TCNGA	2 cut(s)	17, 50
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	2 cut(s)	186, 328
HpyAV	CCTTC	3 cut(s)	142, 434, 490
HpyCH4III	ACNGT	3 cut(s)	100, 131, 217
HpyCH4IV	ACGT	3 cut(s)	144, 188, 481
HpyCH4V	TGCA	7 cut(s)	6, 114, 390, 541, 546, 613, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 387, 543
HpyF3I	CTNAG	3 cut(s)	14, 47, 297
HpySE526I	ACGT	3 cut(s)	144, 188, 481
Hsp92II	CATG	5 cut(s)	29, 156, 175, 234, 525
KroI	GCCGGC	1 cut(s)	20
KroNI	GCCGGC	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	199, 472
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	9 cut(s)	34, 124, 351, 358, 378, 490, 578, 592, 599
LweI	GCATC	2 cut(s)	399, 524
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	3 cut(s)	144, 188, 481
MaeIII	GTNAC	2 cut(s)	512, 593
MalI	GATC	2 cut(s)	201, 474
MboI	GATC	2 cut(s)	199, 472
MboII	GAAGA	5 cut(s)	170, 344, 385, 476, 505
MluCI	AATT	5 cut(s)	70, 83, 91, 115, 620
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	7 cut(s)	56, 85, 116, 292, 340, 463, 567
Mph1103I	ATGCAT	1 cut(s)	392
MroNI	GCCGGC	1 cut(s)	20
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	526
MspI	CCGG	2 cut(s)	21, 565
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	3 cut(s)	111, 387, 543
NaeI	GCCGGC	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	2 cut(s)	199, 472
NgoMIV	GCCGGC	1 cut(s)	20
NlaIII	CATG	5 cut(s)	29, 156, 175, 234, 525
NlaIV	GGNNCC	2 cut(s)	109, 382
NmuCI	GTSAC	2 cut(s)	512, 593
NsiI	ATGCAT	1 cut(s)	392
PaqCI	CACCTGC	1 cut(s)	604
PdiI	GCCGGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	254
PflMI	CCANNNNNTGG	1 cut(s)	585
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Ppu21I	YACGTR	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	109, 382
PspPI	GGNCC	1 cut(s)	380
RsaI	GTAC	3 cut(s)	214, 290, 329
RsaNI	GTAC	3 cut(s)	213, 289, 328
RseI	CAYNNNNRTG	1 cut(s)	526
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	2 cut(s)	199, 472
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	366
SetI	ASST	5 cut(s)	12, 147, 191, 484, 618
SfaNI	GCATC	2 cut(s)	399, 524
SmiMI	CAYNNNNRTG	1 cut(s)	526
Sse9I	AATT	5 cut(s)	70, 83, 91, 115, 620
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	3 cut(s)	100, 131, 217
TaiI	ACGT	3 cut(s)	147, 191, 484
TaqI	TCGA	1 cut(s)	306
TasI	AATT	5 cut(s)	70, 83, 91, 115, 620
TatI	WGTACW	2 cut(s)	288, 327
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	3 cut(s)	222, 264, 301
TseFI	GTSAC	2 cut(s)	512, 593
Tsp45I	GTSAC	2 cut(s)	512, 593
TspDTI	ATGAA	1 cut(s)	374
TspRI	CASTG	3 cut(s)	222, 264, 301
Van91I	CCANNNNNTGG	1 cut(s)	585
XapI	RAATTY	2 cut(s)	70, 83
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.