Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006313

Physical Location & Seq

Genomic Coordinates Forward (+)

56025394 .. 56026685

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG411400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCACAAGCTTTTCAAAACCGGCCATGGAATTCTCTATCCCATCCTCCTCAGAAACCCCAAATTCCTGACACCCATTTCACAATTTCACATCTCCAGCGAAACCCTAGCTCCCAATCGGAAGCTCGAATTCGTAGTCAATGAAGTTCAACAGCTTCGATCATCAAATCCCAGTAATGAATTTGTCTCGGCCTCATACACCGACGAACCGTCCGGCCCGGCCAACGTGGAAGGTTTTGCGGTCCAGATTTCGCATCCATGGGGGGAATGGGTGGACCTGATGGAGCTTTTGCTGAAGAGAGGCTACTTTGAAGGAGACGAAAACCCGTTTCGAAACGGCGAAGTTGGTCCAAAGGAATCGAACCGTATCCGAACCGCTTGCCTTAATTTTGCTCGGGAAAGGTCGAGTCTTCTCAGCTTATTGTCGAGGAAAGATGTCCAGATCATTGCAGGGTATGGGTGCCCAAGCATAGACAGGAAAGTTGTCAACTCAGGAAAGCGGCTAAGGGCACATGTCGGGGTTGATGAAGGAGATGTGTGCAGCTCCTGCGGTTTGAGAGGCGACTGTGAGAGAGCATATGTAAAGGCCCGTGAAGATGAAGGTGGACGTACTGTGGATGTCATGCGATTCTTGTTAACACATGGGCTTGATCCCCTTACTGATACAGTGGGGAACAAGCCTTCTCTAAATAAAAAGGTCAAAGAATCAGTGAGAAGGCTATTGAAAGAGATGGTGGAGTACAGCACTGATAAGCTTGATACCGATCTCCCAACGAACATGACTTTAAAAAGGGTTAAACCCTTGCCAAAACATGCAATGCCACAAGAAAAGTACAACATAAATGTTCCAATGAAGCAAGGCGATTGGATCTGCCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con zf-RanBP

Protein Analysis

293

Amino Acids

33.04

Weight (kDa)

8.93

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70650 AT1G70650
fragaria_vesca	FvH4_4g33730
malus_domestica	MD13G1029300.v1.1
prunus_persica	Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1
pyrus_communis	pycom13g01790 pycom16g01760
rosa_chinensis	RchiOBHm_Chr4g0443241
rosa_laevigata	RLG00000005943 RLG00000005947
rosa_multiflora	Rmu_co8168196.1_g000001 Rmu_sc0007238.1_g000005 Rmu_sc0007968.1_g000002 Rmu_sc0018919.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383810
rosa_rugosa	Rorug04G0344700 Rorug04G0345000
rosa_samantha	Rh4AG399700 Rh4BG411400 Rh4BG411500 Rh4CG426800 Rh4DG406600
rosa_wichuraiana	Rw4G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	459
AciI	CCGC	4 cut(s)	239, 375, 499, 549
AclWI	GGATC	2 cut(s)	644, 875
AcoI	YGGCCR	2 cut(s)	22, 219
AcsI	RAATTY	4 cut(s)	30, 62, 128, 179
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	3 cut(s)	610, 740, 833
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	4 cut(s)	16, 149, 311, 724
AhdI	GACNNNNNGTC	1 cut(s)	208
AluBI	AGCT	8 cut(s)	10, 110, 124, 154, 286, 417, 543, 754
AluI	AGCT	8 cut(s)	10, 110, 124, 154, 286, 417, 543, 754
Alw26I	GTCTC	2 cut(s)	190, 309
AlwI	GGATC	2 cut(s)	644, 875
AlwNI	CAGNNNCTG	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	393
AoxI	GGCC	5 cut(s)	22, 189, 214, 219, 585
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	4 cut(s)	30, 62, 128, 179
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspS9I	GGNCC	5 cut(s)	215, 241, 274, 347, 586
AsuC2I	CCSGG	1 cut(s)	218
AsuII	TTCGAA	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	393
AvaII	GGWCC	3 cut(s)	241, 274, 347
BaeGI	GKGCMC	2 cut(s)	464, 511
BanI	GGYRCC	1 cut(s)	459
BarI	GAAGNNNNNNTAC	2 cut(s)	287, 319
BbsI	GAAGAC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	552
BccI	CCATC	3 cut(s)	50, 274, 724
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BciVI	GTATCC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	190, 309
BfaI	CTAG	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	377
BisI	GCNGC	2 cut(s)	500, 541
BlsI	GCNGC	2 cut(s)	501, 542
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	3 cut(s)	241, 274, 347
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	393
BmgT120I	GGNCC	5 cut(s)	215, 241, 274, 347, 586
BmiI	GGNNCC	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	218
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	79
Bpu10I	CCTNAGC	1 cut(s)	503
Bpu14I	TTCGAA	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	762
BsaJI	CCNNGG	2 cut(s)	25, 257
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	2 cut(s)	444, 822
Bse8I	GATNNNNATC	1 cut(s)	762
BseDI	CCNNGG	2 cut(s)	25, 257
BseGI	GGATG	3 cut(s)	42, 253, 622
BseJI	GATNNNNATC	1 cut(s)	762
BseMI	GCAATG	2 cut(s)	444, 822
BseMII	CTCAG	3 cut(s)	64, 427, 504
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	2 cut(s)	464, 511
BseXI	GCAGC	1 cut(s)	552
BsgI	GTGCAG	1 cut(s)	559
BshFI	GGCC	5 cut(s)	24, 191, 216, 221, 587
BshNI	GGYRCC	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	21, 213, 218
BsmAI	GTCTC	2 cut(s)	190, 309
BsmBI	CGTCTC	1 cut(s)	309
BsnI	GGCC	5 cut(s)	24, 191, 216, 221, 587
BsoBI	CYCGRG	1 cut(s)	393
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	464, 511
Bsp143I	GATC	5 cut(s)	158, 441, 649, 763, 867
Bsp19I	CCATGG	2 cut(s)	25, 257
BspACI	CCGC	4 cut(s)	239, 375, 499, 549
BspANI	GGCC	5 cut(s)	24, 191, 216, 221, 587
BspCNI	CTCAG	3 cut(s)	63, 426, 503
BspLI	GGNNCC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	644, 875
BspT104I	TTCGAA	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	459
BsrDI	GCAATG	2 cut(s)	444, 822
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	25, 257
BssMI	GATC	5 cut(s)	158, 441, 649, 763, 867
BssT1I	CCWWGG	2 cut(s)	25, 257
Bst4CI	ACNGT	5 cut(s)	210, 365, 566, 613, 667
Bst6I	CTCTTC	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	546
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	4 cut(s)	50, 413, 490, 503
BstDSI	CCRYGG	2 cut(s)	25, 257
BstF5I	GGATG	3 cut(s)	42, 253, 622
BstKTI	GATC	5 cut(s)	161, 444, 652, 766, 870
BstMAI	GTCTC	2 cut(s)	190, 309
BstMBI	GATC	5 cut(s)	158, 441, 649, 763, 867
BstMWI	GCNNNNNNNGC	1 cut(s)	546
BstNSI	RCATGY	2 cut(s)	515, 815
BstSCI	CCNGG	1 cut(s)	216
BstSLI	GKGCMC	2 cut(s)	464, 511
BstV1I	GCAGC	1 cut(s)	552
BstV2I	GAAGAC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	867
BstYI	RGATCY	1 cut(s)	867
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	5 cut(s)	24, 191, 216, 221, 587
BtgI	CCRYGG	2 cut(s)	25, 257
BtsCI	GGATG	3 cut(s)	42, 253, 622
BtsIMutI	CAGTG	3 cut(s)	672, 714, 744
Cac8I	GCNNGC	1 cut(s)	379
CaiI	CAGNNNCTG	1 cut(s)	546
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	5 cut(s)	215, 241, 274, 347, 586
Csp6I	GTAC	3 cut(s)	609, 739, 832
CviAII	CATG	7 cut(s)	26, 258, 512, 622, 641, 778, 812
CviQI	GTAC	3 cut(s)	609, 739, 832
DdeI	CTNAG	4 cut(s)	50, 413, 490, 503
DpnI	GATC	5 cut(s)	160, 443, 651, 765, 869
DpnII	GATC	5 cut(s)	158, 441, 649, 763, 867
DraI	TTTAAA	1 cut(s)	786
DriI	GACNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	2 cut(s)	22, 219
Eam1104I	CTCTTC	1 cut(s)	290
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	25, 257
Eco47I	GGWCC	3 cut(s)	241, 274, 347
Eco57I	CTGAAG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	393
EcoRI	GAATTC	2 cut(s)	30, 128
EcoT14I	CCWWGG	2 cut(s)	25, 257
ErhI	CCWWGG	2 cut(s)	25, 257
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	7 cut(s)	29, 261, 515, 625, 644, 781, 815
FatI	CATG	7 cut(s)	25, 257, 511, 621, 640, 777, 811
FauNDI	CATATG	1 cut(s)	577
Fnu4HI	GCNGC	2 cut(s)	500, 541
FokI	GGATG	3 cut(s)	29, 240, 629
Fsp4HI	GCNGC	2 cut(s)	500, 541
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	2 cut(s)	500, 541
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	5 cut(s)	24, 191, 216, 221, 587
HapII	CCGG	3 cut(s)	21, 213, 218
Hin1II	CATG	7 cut(s)	29, 261, 515, 625, 644, 781, 815
HincII	GTYRAC	2 cut(s)	487, 636
HindII	GTYRAC	2 cut(s)	487, 636
HindIII	AAGCTT	2 cut(s)	8, 752
HinfI	GANTC	4 cut(s)	356, 406, 627, 704
HpaI	GTTAAC	1 cut(s)	636
HpaII	CCGG	3 cut(s)	21, 213, 218
Hpy166II	GTNNAC	4 cut(s)	274, 487, 605, 636
Hpy188I	TCNGA	3 cut(s)	53, 120, 371
Hpy188III	TCNNGA	5 cut(s)	67, 244, 395, 439, 492
Hpy8I	GTNNAC	4 cut(s)	274, 487, 605, 636
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	6 cut(s)	224, 305, 521, 593, 690, 708
HpyCH4III	ACNGT	5 cut(s)	210, 365, 566, 613, 667
HpyCH4IV	ACGT	2 cut(s)	225, 607
HpyCH4V	TGCA	4 cut(s)	4, 449, 540, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	546
HpyF3I	CTNAG	4 cut(s)	50, 413, 490, 503
HpySE526I	ACGT	2 cut(s)	225, 607
Hsp92II	CATG	7 cut(s)	29, 261, 515, 625, 644, 781, 815
KspAI	GTTAAC	1 cut(s)	636
Kzo9I	GATC	5 cut(s)	158, 441, 649, 763, 867
LmnI	GCTCC	3 cut(s)	115, 283, 548
Lsp1109I	GCAGC	1 cut(s)	552
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	2 cut(s)	225, 607
MalI	GATC	5 cut(s)	160, 443, 651, 765, 869
MboI	GATC	5 cut(s)	158, 441, 649, 763, 867
MboII	GAAGA	3 cut(s)	307, 401, 605
MflI	RGATCY	1 cut(s)	867
MhlI	GDGCHC	2 cut(s)	464, 511
MluCI	AATT	6 cut(s)	30, 62, 83, 128, 179, 385
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	6 cut(s)	56, 59, 202, 293, 420, 551
MseI	TTAA	4 cut(s)	384, 635, 785, 795
MspI	CCGG	3 cut(s)	21, 213, 218
MspR9I	CCNGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	546
NciI	CCSGG	1 cut(s)	218
NcoI	CCATGG	2 cut(s)	25, 257
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	5 cut(s)	158, 441, 649, 763, 867
NlaIII	CATG	7 cut(s)	29, 261, 515, 625, 644, 781, 815
NlaIV	GGNNCC	1 cut(s)	461
NmeAIII	GCCGAG	1 cut(s)	167
NspI	RCATGY	2 cut(s)	515, 815
NspV	TTCGAA	1 cut(s)	331
PciI	ACATGT	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	356, 627, 704
PkrI	GCNGC	2 cut(s)	501, 542
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PscI	ACATGT	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	461
PspPI	GGNCC	5 cut(s)	215, 241, 274, 347, 586
PstNI	CAGNNNCTG	1 cut(s)	546
PsuI	RGATCY	1 cut(s)	867
RsaI	GTAC	3 cut(s)	610, 740, 833
RsaNI	GTAC	3 cut(s)	609, 739, 832
SaqAI	TTAA	4 cut(s)	384, 635, 785, 795
SatI	GCNGC	2 cut(s)	500, 541
Sau3AI	GATC	5 cut(s)	158, 441, 649, 763, 867
Sau96I	GGNCC	5 cut(s)	215, 241, 274, 347, 586
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	2 cut(s)	464, 511
SfaNI	GCATC	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	331
SinI	GGWCC	3 cut(s)	241, 274, 347
Sse9I	AATT	6 cut(s)	30, 62, 83, 128, 179, 385
SsiI	CCGC	4 cut(s)	239, 375, 499, 549
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	25, 257
TaaI	ACNGT	5 cut(s)	210, 365, 566, 613, 667
TaiI	ACGT	2 cut(s)	228, 610
TaqI	TCGA	6 cut(s)	126, 157, 331, 359, 404, 425
TasI	AATT	6 cut(s)	30, 62, 83, 128, 179, 385
TatI	WGTACW	2 cut(s)	738, 831
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	3 cut(s)	356, 627, 704
Tru1I	TTAA	4 cut(s)	384, 635, 785, 795
Tru9I	TTAA	4 cut(s)	384, 635, 785, 795
TscAI	CASTG	3 cut(s)	672, 714, 751
TseI	GCWGC	1 cut(s)	540
TspDTI	ATGAA	5 cut(s)	156, 192, 540, 612, 866
TspRI	CASTG	3 cut(s)	672, 714, 751
VpaK11BI	GGWCC	3 cut(s)	241, 274, 347
XapI	RAATTY	4 cut(s)	30, 62, 128, 179
XceI	RCATGY	2 cut(s)	515, 815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.