Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007238.1

Orthogroup ID

OG0006313

Physical Location & Seq

Genomic Coordinates Forward (+)

18986 .. 21698

Gene Structure 2713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007238.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgatcggtcatcaggtttgtcaatcggatattcgaacatttgagtttacagaaaatgttttcaatgtggattttatctatagatgtagtttttacttactcgccgacacatatgtttatatattagaattgttttcaaacctagctggggttgagccctctactgggctagcgaagacaattgctcacccctatgacagttgtgtgattgcaggtactgtgcacgaagacgggatagctaggattggcgatgggtgtggcatgctttctctcaatttcgaatttgtgtactgtagaaaagttgttccagttaacaggaataatgtccagattattgcagggtatggatgtccaagaatagacaggaaagttgtcaactcaggaaagtggctaagggcacatgtcggcattgatggaggagatataagtgcttttgtttctgagtatcttcttcatggacaaggtagaaatggtcaaaacagaggtgcaagcaggtggagatttgtggttgaagagaatgatgatcctagtcactcaaactcattggataagacttccaggtttgcagacttcccaattgtacgaggtaagaccgaactgtctcagaatccacaaaagggggacagatggaagttgaagatgttagagaagagcaaaggaggcgcaacggatatggcaagtgatgatgaacttaggtctaccagtactgaaagaagagtattcttttttgattctacagatgatgaagagatggctgagtcgtttggggatagaaagctagaaattaacacgaggcttccatccaggcctaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con zf-RanBP

Protein Analysis

271

Amino Acids

30.5

Weight (kDa)

5.74

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70650 AT1G70650
fragaria_vesca	FvH4_4g33730
malus_domestica	MD13G1029300.v1.1
prunus_persica	Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1
pyrus_communis	pycom13g01790 pycom16g01760
rosa_chinensis	RchiOBHm_Chr4g0443241
rosa_laevigata	RLG00000005943 RLG00000005947
rosa_multiflora	Rmu_co8168196.1_g000001 Rmu_sc0007238.1_g000005 Rmu_sc0007968.1_g000002 Rmu_sc0018919.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383810
rosa_rugosa	Rorug04G0344700 Rorug04G0345000
rosa_samantha	Rh4AG399700 Rh4BG411400 Rh4BG411500 Rh4CG426800 Rh4DG406600
rosa_wichuraiana	Rw4G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	483
AasI	GACNNNNNNGTC	1 cut(s)	598
Acc36I	ACCTGC	2 cut(s)	203, 483
AccI	GTMKAC	1 cut(s)	698
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	4 cut(s)	217, 290, 582, 706
AfiI	CCNNNNNNNGG	4 cut(s)	148, 164, 165, 617
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	4 cut(s)	64, 138, 512, 637
AjnI	CCWGG	2 cut(s)	557, 803
AluBI	AGCT	3 cut(s)	146, 239, 778
AluI	AGCT	3 cut(s)	146, 239, 778
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	606
Alw44I	GTGCAC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	806
ApaLI	GTGCAC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	665
AsuHPI	GGTGA	1 cut(s)	179
AsuII	TTCGAA	2 cut(s)	34, 279
AsuNHI	GCTAGC	1 cut(s)	169
BaeGI	GKGCMC	2 cut(s)	225, 400
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	790
BbsI	GAAGAC	2 cut(s)	182, 234
Bbv12I	GWGCWC	1 cut(s)	225
BccI	CCATC	5 cut(s)	245, 407, 621, 745, 808
BciT130I	CCWGG	2 cut(s)	559, 805
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	5 cut(s)	143, 170, 240, 528, 779
BfmI	CTRYAG	3 cut(s)	79, 292, 735
BfuAI	ACCTGC	2 cut(s)	203, 483
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	2 cut(s)	559, 805
BmrFI	CCNGG	2 cut(s)	559, 805
BmrI	ACTGGG	1 cut(s)	174
BmtI	GCTAGC	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	2 cut(s)	182, 234
Bpu10I	CCTNAGC	1 cut(s)	392
Bpu14I	TTCGAA	2 cut(s)	34, 279
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 164, 165, 617
Bse1I	ACTGG	3 cut(s)	169, 308, 702
BseBI	CCWGG	2 cut(s)	559, 805
BseGI	GGATG	2 cut(s)	353, 800
BseLI	CCNNNNNNNGG	4 cut(s)	148, 164, 165, 617
BseMII	CTCAG	4 cut(s)	393, 432, 617, 747
BseNI	ACTGG	3 cut(s)	169, 308, 702
BseRI	GAGGAG	1 cut(s)	432
BseSI	GKGCMC	2 cut(s)	225, 400
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	808
BsiHKAI	GWGCWC	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	4 cut(s)	148, 164, 165, 617
BsmAI	GTCTC	1 cut(s)	606
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	1 cut(s)	808
Bsp119I	TTCGAA	2 cut(s)	34, 279
Bsp1286I	GDGCHC	3 cut(s)	159, 225, 400
Bsp143I	GATC	2 cut(s)	3, 523
BspANI	GGCC	1 cut(s)	808
BspCNI	CTCAG	4 cut(s)	392, 433, 616, 748
BspMI	ACCTGC	2 cut(s)	203, 483
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	518
BspQI	GCTCTTC	1 cut(s)	644
BspT104I	TTCGAA	2 cut(s)	34, 279
BsrI	ACTGG	3 cut(s)	169, 308, 702
BssMI	GATC	2 cut(s)	3, 523
BssSI	CACGAG	1 cut(s)	790
Bst2BI	CACGAG	1 cut(s)	790
Bst2UI	CCWGG	2 cut(s)	559, 805
Bst4CI	ACNGT	4 cut(s)	200, 220, 293, 600
Bst6I	CTCTTC	4 cut(s)	507, 644, 709, 741
BstBI	TTCGAA	2 cut(s)	34, 279
BstC8I	GCNNGC	3 cut(s)	171, 263, 490
BstDEI	CTNAG	6 cut(s)	379, 392, 441, 603, 692, 756
BstF5I	GGATG	2 cut(s)	353, 800
BstHHI	GCGC	1 cut(s)	665
BstKTI	GATC	2 cut(s)	6, 526
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	2 cut(s)	3, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	660
BstNI	CCWGG	2 cut(s)	559, 805
BstNSI	RCATGY	2 cut(s)	265, 404
BstSCI	CCNGG	2 cut(s)	557, 803
BstSFI	CTRYAG	3 cut(s)	79, 292, 735
BstSLI	GKGCMC	2 cut(s)	225, 400
BstV2I	GAAGAC	2 cut(s)	182, 234
BsuRI	GGCC	1 cut(s)	808
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	353, 800
BveI	ACCTGC	2 cut(s)	203, 483
Cac8I	GCNNGC	3 cut(s)	171, 263, 490
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	665
Csp6I	GTAC	4 cut(s)	216, 289, 581, 705
CviAII	CATG	3 cut(s)	262, 401, 455
CviJI	RGCY	9 cut(s)	146, 157, 169, 239, 391, 755, 778, 796, 808
CviKI_1	RGCY	9 cut(s)	146, 157, 169, 239, 391, 755, 778, 796, 808
CviQI	GTAC	4 cut(s)	216, 289, 581, 705
DdeI	CTNAG	6 cut(s)	379, 392, 441, 603, 692, 756
DpnI	GATC	2 cut(s)	5, 525
DpnII	GATC	2 cut(s)	3, 523
DrdI	GACNNNNNNGTC	1 cut(s)	598
DseDI	GACNNNNNNGTC	1 cut(s)	598
Eam1104I	CTCTTC	4 cut(s)	507, 644, 709, 741
EarI	CTCTTC	4 cut(s)	507, 644, 709, 741
Eco147I	AGGCCT	1 cut(s)	808
Eco24I	GRGCYC	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	557, 803
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	3 cut(s)	265, 404, 458
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	3 cut(s)	261, 400, 454
FauNDI	CATATG	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	698
FokI	GGATG	2 cut(s)	360, 787
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	5 cut(s)	143, 170, 240, 528, 779
GlaI	GCGC	1 cut(s)	664
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	808
HhaI	GCGC	1 cut(s)	665
Hin1II	CATG	3 cut(s)	265, 404, 458
Hin6I	GCGC	1 cut(s)	663
HinP1I	GCGC	1 cut(s)	663
HincII	GTYRAC	2 cut(s)	313, 376
HindII	GTYRAC	2 cut(s)	313, 376
HinfI	GANTC	3 cut(s)	607, 731, 758
HpaI	GTTAAC	1 cut(s)	313
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	6 cut(s)	48, 223, 289, 313, 376, 699
Hpy188I	TCNGA	3 cut(s)	28, 442, 606
Hpy188III	TCNNGA	2 cut(s)	328, 381
Hpy8I	GTNNAC	6 cut(s)	48, 223, 289, 313, 376, 699
HpyCH4III	ACNGT	4 cut(s)	200, 220, 293, 600
HpyCH4V	TGCA	5 cut(s)	212, 223, 338, 488, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	660
HpyF3I	CTNAG	6 cut(s)	379, 392, 441, 603, 692, 756
Hsp92II	CATG	3 cut(s)	265, 404, 458
HspAI	GCGC	1 cut(s)	663
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	3, 523
LguI	GCTCTTC	1 cut(s)	644
MaeI	CTAG	5 cut(s)	143, 170, 240, 528, 779
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	2 cut(s)	5, 525
MboI	GATC	2 cut(s)	3, 523
MboII	GAAGA	9 cut(s)	187, 239, 440, 443, 524, 649, 661, 726, 758
MfeI	CAATTG	2 cut(s)	180, 576
MhlI	GDGCHC	3 cut(s)	159, 225, 400
MluCI	AATT	6 cut(s)	128, 180, 274, 281, 576, 783
MlyI	GAGTC	1 cut(s)	767
MnlI	CCTC	6 cut(s)	169, 410, 476, 578, 653, 786
MseI	TTAA	2 cut(s)	312, 786
MslI	CAYNNNNRTG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	559, 805
MunI	CAATTG	2 cut(s)	180, 576
MvaI	CCWGG	2 cut(s)	559, 805
MwoI	GCNNNNNNNGC	1 cut(s)	660
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	2 cut(s)	3, 523
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	3 cut(s)	265, 404, 458
NmuCI	GTSAC	1 cut(s)	530
NspI	RCATGY	2 cut(s)	265, 404
NspV	TTCGAA	2 cut(s)	34, 279
PaeI	GCATGC	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	483
PceI	AGGCCT	1 cut(s)	808
PciI	ACATGT	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	644
PfeI	GAWTC	2 cut(s)	607, 731
PleI	GAGTC	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	766
PscI	ACATGT	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	557, 803
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	557, 803
PstNI	CAGNNNCTG	1 cut(s)	218
RsaI	GTAC	4 cut(s)	217, 290, 582, 706
RsaNI	GTAC	4 cut(s)	216, 289, 581, 705
RseI	CAYNNNNRTG	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	2 cut(s)	312, 786
Sau3AI	GATC	2 cut(s)	3, 523
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	1 cut(s)	767
ScrFI	CCNGG	2 cut(s)	559, 805
SduI	GDGCHC	3 cut(s)	159, 225, 400
SfcI	CTRYAG	3 cut(s)	79, 292, 735
SfuI	TTCGAA	2 cut(s)	34, 279
SmiMI	CAYNNNNRTG	1 cut(s)	192
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	6 cut(s)	128, 180, 274, 281, 576, 783
SseBI	AGGCCT	1 cut(s)	808
SspMI	CTAG	5 cut(s)	143, 170, 240, 528, 779
StuI	AGGCCT	1 cut(s)	808
StyD4I	CCNGG	2 cut(s)	557, 803
TaaI	ACNGT	4 cut(s)	200, 220, 293, 600
TaqI	TCGA	2 cut(s)	34, 279
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	6 cut(s)	128, 180, 274, 281, 576, 783
TatI	WGTACW	2 cut(s)	288, 704
TfiI	GAWTC	2 cut(s)	607, 731
Tru1I	TTAA	2 cut(s)	312, 786
Tru9I	TTAA	2 cut(s)	312, 786
TseFI	GTSAC	1 cut(s)	530
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	3 cut(s)	443, 702, 759
TspGWI	ACGGA	1 cut(s)	683
VneI	GTGCAC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	2 cut(s)	265, 404
XmiI	GTMKAC	1 cut(s)	698
XspI	CTAG	5 cut(s)	143, 170, 240, 528, 779
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.