Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006313

Physical Location & Seq

Genomic Coordinates Reverse (-)

2954729 .. 2956965

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005943

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTTGTTCCAAACTTCAGTGACTGTCAGTCACTGACTCACCATAACAGCCAGGCGGGTGCAGCTCAATCAAATAAATTCAAATGCACCAGCTTTTCAAAACCATCTTCTGAGGTAAATAAGATTATTGCAGGGCATGGATGCCCAAGCATAGACAGGAAAGTTGTCAACTCAGGAAAGTGGCTAAGGGCAGATGTCGGCATTGATGGAGGAGATGTGCGCAGCTCCTGCAGTTTGAGAGGCGACTGTGAGAGAGCATATGTGAAGGCTCGTGAAGATGAAGGACAAGGTAGAAATGGTCAAAACAGAGGTGCAAGCAGGTGGAGATTTGTGGTTGAAGAGAATGATGATCCCAGTCACTCAAACTCATTAGATAAGACTTCCAGGTTTGCAGACTTCCCAATTGTACGAGATGATAAAGAGATGGCTGAGTGGTTTGGGGATAGAAAGCTAGAAATTAACACGAGGCTTCCATCCAGGCCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con zf-RanBP

Protein Analysis

163

Amino Acids

18.04

Weight (kDa)

8.31

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70650 AT1G70650
fragaria_vesca	FvH4_4g33730
malus_domestica	MD13G1029300.v1.1
prunus_persica	Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1
pyrus_communis	pycom13g01790 pycom16g01760
rosa_chinensis	RchiOBHm_Chr4g0443241
rosa_laevigata	RLG00000005943 RLG00000005947
rosa_multiflora	Rmu_co8168196.1_g000001 Rmu_sc0007238.1_g000005 Rmu_sc0007968.1_g000002 Rmu_sc0018919.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383810
rosa_rugosa	Rorug04G0344700 Rorug04G0345000
rosa_samantha	Rh4AG399700 Rh4BG411400 Rh4BG411500 Rh4CG426800 Rh4DG406600
rosa_wichuraiana	Rw4G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	309
Acc16I	TGCGCA	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	309
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	82, 99, 338
AhdI	GACNNNNNGTC	1 cut(s)	28
AjnI	CCWGG	3 cut(s)	51, 383, 476
AluBI	AGCT	4 cut(s)	65, 93, 225, 451
AluI	AGCT	4 cut(s)	65, 93, 225, 451
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	3 cut(s)	24, 34, 228
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	2 cut(s)	62, 222
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	32
BauI	CACGAG	2 cut(s)	270, 463
BbvI	GCAGC	2 cut(s)	74, 234
BccI	CCATC	4 cut(s)	112, 200, 418, 481
BciT130I	CCWGG	3 cut(s)	53, 385, 478
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	309
BisI	GCNGC	2 cut(s)	63, 223
BlsI	GCNGC	2 cut(s)	64, 224
Bme1390I	CCNGG	3 cut(s)	53, 385, 478
BmeRI	GACNNNNNGTC	1 cut(s)	28
BmrFI	CCNGG	3 cut(s)	53, 385, 478
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	131
BmuI	ACTGGG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bse1I	ACTGG	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	53, 385, 478
BseGI	GGATG	2 cut(s)	146, 473
BseMII	CTCAG	3 cut(s)	102, 186, 420
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	74, 234
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	481
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	3 cut(s)	103, 185, 421
BspMAI	CTGCAG	1 cut(s)	233
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	349
BssSI	CACGAG	2 cut(s)	270, 463
Bst2BI	CACGAG	2 cut(s)	270, 463
Bst2UI	CCWGG	3 cut(s)	53, 385, 478
Bst4CI	ACNGT	2 cut(s)	26, 248
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	4 cut(s)	111, 172, 185, 429
BstF5I	GGATG	2 cut(s)	146, 473
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 228
BstNI	CCWGG	3 cut(s)	53, 385, 478
BstSCI	CCNGG	3 cut(s)	51, 383, 476
BstSFI	CTRYAG	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	74, 234
BsuRI	GGCC	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	146, 473
BtsIMutI	CAGTG	2 cut(s)	25, 32
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	316
CaiI	CAGNNNCTG	3 cut(s)	24, 34, 228
CfoI	GCGC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	1 cut(s)	137
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	4 cut(s)	111, 172, 185, 429
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
DriI	GACNNNNNGTC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	333
Eam1105I	GACNNNNNGTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	481
EcoRII	CCWGG	3 cut(s)	51, 383, 476
FaeI	CATG	1 cut(s)	140
FaiI	YATR	5 cut(s)	45, 138, 152, 259, 261
FatI	CATG	1 cut(s)	136
FauI	CCCGC	1 cut(s)	49
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	63, 223
FokI	GGATG	2 cut(s)	153, 460
Fsp4HI	GCNGC	2 cut(s)	63, 223
FspBI	CTAG	1 cut(s)	452
FspI	TGCGCA	1 cut(s)	221
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	2 cut(s)	63, 223
HaeIII	GGCC	1 cut(s)	481
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	140
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	174, 272
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	259, 275
HpyCH4III	ACNGT	2 cut(s)	26, 248
HpyCH4V	TGCA	6 cut(s)	62, 87, 131, 231, 314, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 228
HpyF3I	CTNAG	4 cut(s)	111, 172, 185, 429
Hsp92II	CATG	1 cut(s)	140
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	2 cut(s)	74, 234
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	452
MaeIII	GTNAC	3 cut(s)	20, 30, 356
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	3 cut(s)	99, 287, 350
MfeI	CAATTG	1 cut(s)	402
MluCI	AATT	3 cut(s)	77, 402, 456
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	5 cut(s)	106, 203, 233, 302, 459
MseI	TTAA	1 cut(s)	459
MspR9I	CCNGG	3 cut(s)	53, 385, 478
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	3 cut(s)	53, 385, 478
MwoI	GCNNNNNNNGC	2 cut(s)	62, 228
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	140
NmuCI	GTSAC	3 cut(s)	20, 30, 356
NsbI	TGCGCA	1 cut(s)	221
PaqCI	CACCTGC	1 cut(s)	309
PceI	AGGCCT	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	64, 224
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Psp6I	CCWGG	3 cut(s)	51, 383, 476
PspGI	CCWGG	3 cut(s)	51, 383, 476
PstI	CTGCAG	1 cut(s)	233
PstNI	CAGNNNCTG	3 cut(s)	24, 34, 228
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	2 cut(s)	63, 223
Sau3AI	GATC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	3 cut(s)	53, 385, 478
SetI	ASST	9 cut(s)	67, 95, 117, 227, 292, 313, 323, 389, 453
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	229
Sse9I	AATT	3 cut(s)	77, 402, 456
SseBI	AGGCCT	1 cut(s)	481
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	452
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	3 cut(s)	51, 383, 476
TaaI	ACNGT	2 cut(s)	26, 248
TasI	AATT	3 cut(s)	77, 402, 456
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	25, 39
TseFI	GTSAC	3 cut(s)	20, 30, 356
TseI	GCWGC	2 cut(s)	62, 222
Tsp45I	GTSAC	3 cut(s)	20, 30, 356
TspDTI	ATGAA	1 cut(s)	294
TspRI	CASTG	2 cut(s)	25, 39
XapI	RAATTY	1 cut(s)	77
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.