Prupe.1G332300_v2.0.a1

Zinc finger domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
31450674 .. 31453626
2953 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G332300.2

Sequence Viewer

Length: 1710 bp
ATGTACAAGCTTCTCAAAACCGGCCATGACAATCTCTATCCTGTCCTCAGAATCCACTTCCAAAACCCAGAATTTCTCATACCAATTTCGCAATTTCACAGCCTCAGCGAAACCCTAGCTCCCAATCCAAAGCTGGACTTCATAGTGAATGAAGTTAAGGAGCTTCAATCGTCAAAAGACTCAAAACCCACATACAAGATCACCCAATTGGCTTCAGACACCGATGACCCGTCCGATCGGGGAAGCCTGACGAATGTGGAGGATTGTACGGTGCAGATTTCGCATCCGTGGCGGGAATGGGTGGAGCTGATGGAGTGCTTGTTGAAAAGAGGCTACTTTGAAGGAGACGAAAACCCGTTTCGGAATGCTGAACTGGGTTCAAAGGAATCGAATCGTATACGAACAGCATGCCTGAATTTTGCTCGGGACCGTTGTAGTCTTATAAGGCTATTGTCAAGGAAAGATATCCGGACCATTGCAGGATGTGGATGCCCGAGCTTAGATAGGAAAGTTGTCAACTCGGGAAAGCGTCTAAGGGCACATGTGGGCATTAATGAAGGAGATGTCTGCAGCTCCTGCAATTTGAGAGGAGAATGTGAGAGAGCATATGTGAAGGCACGTGAAGATGAAGGTGGGCGTACTGTGGATGTCATGCGTTTCTTGTTAACGTATGGGCTTGATCCCATTACTGGTACAGTGGAGAACAAGCCATGTCTAAACCAAATGGTCAAAGAATCAGTGAGAAGGCTACTGAAAGAGATGGTAGATTACAGCAATGAGAACCTTGACTCCAATCTCCCAAAGTCTACAAGTACAACCATGAAAAGGGTTGCATCAATGCCAAACCATTCAATTTCACAAGAAAAATTGCAGATAAATGTTCCAATGAAGCAAGGCGACTGGCTTTGCCCCAATATTCCGTTTGGCAGATGCAACTTCCTAAACTTCGCCAGAAATATCAAGTGCCTACGTTGTGATGAACTTTCTGAAGAAAGACTGGCAAAACTAAGGGAGGATCAGGATCATCTTCCATTGAAGAAGGGCGACTGGATATGTGACAAATGCAATTTCTTAAACTTTGCGAAGAATGGTAGATGCTTACAATGCAAAGAGAAGCCTCCAAAGCGGCATATAAATCCTGGAGAGTGGGAATGCGACTCTTGCAATTATATTAACTTTAGGAGAAACATGGTGTGCTTAAAATGTGATCATAAAAGACCTAAGGCAGCACATTCTTCAGAGGCTTCTGCTGAACCTGTACGTGAAGATGGAGGCTACCCTAATAATAACAGTTTGAGTTTTGTCGGAGGTGACTCTGACGTTAATGATCAATCATATGCGGGGCAATGTAGGCAAAGTCAAGATAGAGGTGTCGGCATGTGGAGATTTGTGGATGAAGGAGATGACGACCGTAGTCACTCAAAGTCATGGAATGAGGCTTCTAGATTTGTAGATTTCCCCATTGCAGGAGGTAAGACCGAGCTGTCTCAGAATCCGCAGAAGAGGGACAAATGGAAATTGAAGATGTTAGAGAGGAGCAAAGGCGGCATGAGGGATATGGCAAACGATGATGGATCTAGGTCTGCCAGTATTCCAAGAAGCTTAGAGCTTTCTGATTGCACAGATGATGAAGAGATGTCTGACTGGTTTGGGGATGGAAAGCTAGAAACAGCTAGTGCTCTATCTGAACCTAAGAAATACGATTTTTGA

Protein Analysis

570

Amino Acids

64.8

Weight (kDa)

6.83

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
AasI GACNNNNNNGTC 1 cut(s) 1483
AccI GTMKAC 2 cut(s) 397, 806
AccIII TCCGGA 1 cut(s) 468
AciI CCGC 5 cut(s) 292, 1126, 1340, 1496, 1545
AclWI GGATC 4 cut(s) 674, 1023, 1029, 1582
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 2 cut(s) 71, 415
AcuI CTGAAG 3 cut(s) 198, 1008, 1221
AcvI CACGTG 1 cut(s) 620
AfaI GTAC 6 cut(s) 5, 268, 640, 694, 814, 1260
AfiI CCNNNNNNNGG 3 cut(s) 689, 825, 1466
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 7 cut(s) 167, 325, 341, 381, 852, 1036, 1522
AjnI CCWGG 1 cut(s) 1138
AloI GAACNNNNNNTCC 2 cut(s) 773, 805
Alw21I GWGCWC 1 cut(s) 1681
Alw26I GTCTC 2 cut(s) 339, 1491
AlwI GGATC 4 cut(s) 674, 1023, 1029, 1582
AlwNI CAGNNNCTG 1 cut(s) 576
Ama87I CYCGRG 3 cut(s) 423, 493, 520
Aor13HI TCCGGA 1 cut(s) 468
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 2 cut(s) 570, 1226
ApoI RAATTY 2 cut(s) 71, 415
AseI ATTAAT 1 cut(s) 552
AspS9I GGNCC 2 cut(s) 427, 471
AsuHPI GGTGA 2 cut(s) 193, 1322
AvaI CYCGRG 3 cut(s) 423, 493, 520
AvaII GGWCC 2 cut(s) 427, 471
AxyI CCTNAGG 1 cut(s) 1221
BaeGI GKGCMC 1 cut(s) 541
BbrPI CACGTG 1 cut(s) 620
Bbv12I GWGCWC 1 cut(s) 1681
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 2 cut(s) 582, 1238
BccI CCATC 5 cut(s) 304, 754, 1262, 1565, 1649
BcgI CGANNNNNNTGC 2 cut(s) 390, 424
BciT130I CCWGG 1 cut(s) 1140
BclI TGATCA 2 cut(s) 1207, 1327
BcoDI GTCTC 2 cut(s) 339, 1491
BfaI CTAG 5 cut(s) 116, 1443, 1578, 1664, 1674
BfmI CTRYAG 1 cut(s) 568
BisI GCNGC 4 cut(s) 571, 1127, 1227, 1546
BlsI GCNGC 4 cut(s) 572, 1128, 1228, 1547
Bme1390I CCNGG 1 cut(s) 1140
Bme18I GGWCC 2 cut(s) 427, 471
BmeT110I CYCGRG 3 cut(s) 423, 493, 520
BmgT120I GGNCC 2 cut(s) 427, 471
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 1140
BmrI ACTGGG 1 cut(s) 383
BmsI GCATC 5 cut(s) 292, 479, 842, 920, 1085
BmuI ACTGGG 1 cut(s) 383
BoxI GACNNNNGTC 1 cut(s) 1413
BpmI CTGGAG 1 cut(s) 1161
Bpu10I CCTNAGC 1 cut(s) 104
BsaAI YACGTR 2 cut(s) 620, 1262
BsaBI GATNNNNATC 1 cut(s) 1020
BsaJI CCNNGG 1 cut(s) 287
BsaWI WCCGGW 1 cut(s) 468
BsaXI ACNNNNNCTCC 6 cut(s) 103, 133, 305, 335, 773, 803
Bsc4I CCNNNNNNNGG 3 cut(s) 689, 825, 1466
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 7 cut(s) 378, 694, 905, 1002, 1052, 1587, 1649
Bse21I CCTNAGG 1 cut(s) 1221
Bse3DI GCAATG 4 cut(s) 474, 781, 1352, 1461
Bse8I GATNNNNATC 1 cut(s) 1020
BseAI TCCGGA 1 cut(s) 468
BseBI CCWGG 1 cut(s) 1140
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 6 cut(s) 283, 488, 494, 652, 1399, 1660
BseJI GATNNNNATC 1 cut(s) 1020
BseLI CCNNNNNNNGG 3 cut(s) 689, 825, 1466
BseMI GCAATG 4 cut(s) 474, 781, 1352, 1461
BseMII CTCAG 3 cut(s) 61, 118, 1502
BseNI ACTGG 7 cut(s) 378, 694, 905, 1002, 1052, 1587, 1649
BseRI GAGGAG 2 cut(s) 603, 1549
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 2 cut(s) 582, 1238
BsgI GTGCAG 1 cut(s) 293
Bsh1285I CGRYCG 2 cut(s) 238, 1411
BshFI GGCC 1 cut(s) 24
BsiEI CGRYCG 2 cut(s) 238, 1411
BsiHKAI GWGCWC 1 cut(s) 1681
BsiHKCI CYCGRG 3 cut(s) 423, 493, 520
BsiSI CCGG 2 cut(s) 21, 469
BslFI GGGAC 2 cut(s) 440, 1520
BslI CCNNNNNNNGG 3 cut(s) 689, 825, 1466
BsmAI GTCTC 2 cut(s) 339, 1491
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 2 cut(s) 440, 1520
BsmI GAATGC 2 cut(s) 370, 1157
BsnI GGCC 1 cut(s) 24
BsoBI CYCGRG 3 cut(s) 423, 493, 520
Bsp1286I GDGCHC 2 cut(s) 541, 1681
Bsp13I TCCGGA 1 cut(s) 468
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 8 cut(s) 198, 235, 679, 1015, 1021, 1207, 1327, 1574
BspACI CCGC 5 cut(s) 292, 1126, 1340, 1496, 1545
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 3 cut(s) 60, 117, 1501
BspEI TCCGGA 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 428
BspMAI CTGCAG 1 cut(s) 572
BspPI GGATC 4 cut(s) 674, 1023, 1029, 1582
BsrDI GCAATG 4 cut(s) 474, 781, 1352, 1461
BsrFI RCCGGY 1 cut(s) 20
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 7 cut(s) 378, 694, 905, 1002, 1052, 1587, 1649
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 8 cut(s) 198, 235, 679, 1015, 1021, 1207, 1327, 1574
BssNAI GTATAC 1 cut(s) 398
Bst1107I GTATAC 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 1140
Bst4CI ACNGT 6 cut(s) 271, 431, 643, 697, 1292, 1412
Bst6I CTCTTC 2 cut(s) 1496, 1626
BstAPI GCANNNNNTGC 1 cut(s) 576
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 2 cut(s) 620, 1262
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 9 cut(s) 47, 104, 499, 533, 1007, 1221, 1488, 1603, 1692
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 6 cut(s) 283, 488, 494, 652, 1399, 1660
BstKTI GATC 8 cut(s) 201, 238, 682, 1018, 1024, 1210, 1330, 1577
BstMAI GTCTC 2 cut(s) 339, 1491
BstMBI GATC 8 cut(s) 198, 235, 679, 1015, 1021, 1207, 1327, 1574
BstMCI CGRYCG 2 cut(s) 238, 1411
BstMWI GCNNNNNNNGC 8 cut(s) 280, 289, 576, 1104, 1123, 1161, 1351, 1545
BstNI CCWGG 1 cut(s) 1140
BstNSI RCATGY 3 cut(s) 411, 545, 1381
BstPAI GACNNNNGTC 1 cut(s) 1413
BstSCI CCNGG 1 cut(s) 1138
BstSFI CTRYAG 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 541
BstV1I GCAGC 2 cut(s) 582, 1238
BstX2I RGATCY 1 cut(s) 1574
BstYI RGATCY 1 cut(s) 1574
BstZ17I GTATAC 1 cut(s) 398
Bsu36I CCTNAGG 1 cut(s) 1221
BsuRI GGCC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 6 cut(s) 283, 488, 494, 652, 1399, 1660
BtsIMutI CAGTG 2 cut(s) 702, 744
Cac8I GCNNGC 1 cut(s) 409
CaiI CAGNNNCTG 1 cut(s) 576
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 427, 471
CseI GACGC 1 cut(s) 518
Csp6I GTAC 6 cut(s) 4, 267, 639, 693, 813, 1259
CviQI GTAC 6 cut(s) 4, 267, 639, 693, 813, 1259
DdeI CTNAG 9 cut(s) 47, 104, 499, 533, 1007, 1221, 1488, 1603, 1692
DpnI GATC 8 cut(s) 200, 237, 681, 1017, 1023, 1209, 1329, 1576
DpnII GATC 8 cut(s) 198, 235, 679, 1015, 1021, 1207, 1327, 1574
DrdI GACNNNNNNGTC 1 cut(s) 1483
DseDI GACNNNNNNGTC 1 cut(s) 1483
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 2 cut(s) 1496, 1626
EarI CTCTTC 2 cut(s) 1496, 1626
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 427, 471
Eco57I CTGAAG 3 cut(s) 198, 1008, 1221
Eco72I CACGTG 1 cut(s) 620
Eco81I CCTNAGG 1 cut(s) 1221
Eco88I CYCGRG 3 cut(s) 423, 493, 520
EcoRII CCWGG 1 cut(s) 1138
EcoRV GATATC 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 339
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 2 cut(s) 440, 1520
FauI CCCGC 2 cut(s) 285, 1333
FauNDI CATATG 2 cut(s) 607, 1336
FbaI TGATCA 2 cut(s) 1207, 1327
FblI GTMKAC 2 cut(s) 397, 806
Fnu4HI GCNGC 4 cut(s) 571, 1127, 1227, 1546
FokI GGATG 6 cut(s) 270, 495, 501, 659, 1406, 1667
Fsp4HI GCNGC 4 cut(s) 571, 1127, 1227, 1546
FspBI CTAG 5 cut(s) 116, 1443, 1578, 1664, 1674
GluI GCNGC 4 cut(s) 571, 1127, 1227, 1546
GsuI CTGGAG 1 cut(s) 1161
HaeIII GGCC 1 cut(s) 24
HapII CCGG 2 cut(s) 21, 469
HgaI GACGC 1 cut(s) 518
HincII GTYRAC 2 cut(s) 517, 666
HindII GTYRAC 2 cut(s) 517, 666
HindIII AAGCTT 2 cut(s) 8, 1600
HinfI GANTC 9 cut(s) 51, 179, 386, 391, 734, 788, 1157, 1313, 1492
HpaI GTTAAC 1 cut(s) 666
HpaII CCGG 2 cut(s) 21, 469
HphI GGTGA 2 cut(s) 193, 1322
Hpy166II GTNNAC 4 cut(s) 398, 517, 666, 807
Hpy188III TCNNGA 6 cut(s) 425, 469, 522, 1019, 1361, 1443
Hpy8I GTNNAC 4 cut(s) 398, 517, 666, 807
HpyAV CCTTC 7 cut(s) 335, 551, 607, 623, 738, 1033, 1391
HpyCH4III ACNGT 6 cut(s) 271, 431, 643, 697, 1292, 1412
HpyCH4IV ACGT 5 cut(s) 619, 668, 970, 1261, 1320
HpyF10VI GCNNNNNNNGC 8 cut(s) 280, 289, 576, 1104, 1123, 1161, 1351, 1545
HpyF3I CTNAG 9 cut(s) 47, 104, 499, 533, 1007, 1221, 1488, 1603, 1692
HpySE526I ACGT 5 cut(s) 619, 668, 970, 1261, 1320
Kpn2I TCCGGA 1 cut(s) 468
Ksp22I TGATCA 2 cut(s) 1207, 1327
KspAI GTTAAC 1 cut(s) 666
Kzo9I GATC 8 cut(s) 198, 235, 679, 1015, 1021, 1207, 1327, 1574
LmnI GCTCC 5 cut(s) 124, 160, 304, 578, 1536
Lsp1109I GCAGC 2 cut(s) 582, 1238
LweI GCATC 5 cut(s) 292, 479, 842, 920, 1085
MaeI CTAG 5 cut(s) 116, 1443, 1578, 1664, 1674
MaeII ACGT 5 cut(s) 619, 668, 970, 1261, 1320
MaeIII GTNAC 3 cut(s) 1055, 1310, 1415
MalI GATC 8 cut(s) 200, 237, 681, 1017, 1023, 1209, 1329, 1576
MboI GATC 8 cut(s) 198, 235, 679, 1015, 1021, 1207, 1327, 1574
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 1 cut(s) 1574
MhlI GDGCHC 2 cut(s) 541, 1681
MlyI GAGTC 4 cut(s) 173, 782, 1151, 1307
MmeI TCCRAC 1 cut(s) 1285
MroI TCCGGA 1 cut(s) 468
MseI TTAA 7 cut(s) 156, 552, 665, 1073, 1173, 1199, 1323
MspI CCGG 2 cut(s) 21, 469
MspR9I CCNGG 1 cut(s) 1140
MunI CAATTG 1 cut(s) 206
Mva1269I GAATGC 2 cut(s) 370, 1157
MvaI CCWGG 1 cut(s) 1140
MwoI GCNNNNNNNGC 8 cut(s) 280, 289, 576, 1104, 1123, 1161, 1351, 1545
NdeI CATATG 2 cut(s) 607, 1336
NdeII GATC 8 cut(s) 198, 235, 679, 1015, 1021, 1207, 1327, 1574
NlaIV GGNNCC 1 cut(s) 428
NmuCI GTSAC 3 cut(s) 1055, 1310, 1415
NspI RCATGY 3 cut(s) 411, 545, 1381
PaeI GCATGC 1 cut(s) 411
PciI ACATGT 1 cut(s) 541
PctI GAATGC 2 cut(s) 370, 1157
PfeI GAWTC 5 cut(s) 51, 386, 391, 734, 1492
PfoI TCCNGGA 1 cut(s) 1138
PkrI GCNGC 4 cut(s) 572, 1128, 1228, 1547
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 4 cut(s) 173, 782, 1151, 1307
PmaCI CACGTG 1 cut(s) 620
PmlI CACGTG 1 cut(s) 620
PpsI GAGTC 4 cut(s) 173, 782, 1151, 1307
Ppu21I YACGTR 2 cut(s) 620, 1262
PscI ACATGT 1 cut(s) 541
PshAI GACNNNNGTC 1 cut(s) 1413
PshBI ATTAAT 1 cut(s) 552
PsiI TTATAA 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 1138
PspCI CACGTG 1 cut(s) 620
PspGI CCWGG 1 cut(s) 1138
PspN4I GGNNCC 1 cut(s) 428
PspPI GGNCC 2 cut(s) 427, 471
PstI CTGCAG 1 cut(s) 572
PstNI CAGNNNCTG 1 cut(s) 576
PsuI RGATCY 1 cut(s) 1574
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 6 cut(s) 5, 268, 640, 694, 814, 1260
RsaNI GTAC 6 cut(s) 4, 267, 639, 693, 813, 1259
SaqAI TTAA 7 cut(s) 156, 552, 665, 1073, 1173, 1199, 1323
SatI GCNGC 4 cut(s) 571, 1127, 1227, 1546
Sau3AI GATC 8 cut(s) 198, 235, 679, 1015, 1021, 1207, 1327, 1574
Sau96I GGNCC 2 cut(s) 427, 471
SchI GAGTC 4 cut(s) 173, 782, 1151, 1307
ScrFI CCNGG 1 cut(s) 1140
SduI GDGCHC 2 cut(s) 541, 1681
SfaNI GCATC 5 cut(s) 292, 479, 842, 920, 1085
SfcI CTRYAG 1 cut(s) 568
SinI GGWCC 2 cut(s) 427, 471
SphI GCATGC 1 cut(s) 411
SsiI CCGC 5 cut(s) 292, 1126, 1340, 1496, 1545
SspI AATATT 1 cut(s) 916
SspMI CTAG 5 cut(s) 116, 1443, 1578, 1664, 1674
StyD4I CCNGG 1 cut(s) 1138
TaaI ACNGT 6 cut(s) 271, 431, 643, 697, 1292, 1412
TaiI ACGT 5 cut(s) 622, 671, 973, 1264, 1323
TaqI TCGA 1 cut(s) 389
TaqII GACCGA 1 cut(s) 1493
TatI WGTACW 2 cut(s) 3, 812
TauI GCSGC 2 cut(s) 1129, 1548
TfiI GAWTC 5 cut(s) 51, 386, 391, 734, 1492
Tru1I TTAA 7 cut(s) 156, 552, 665, 1073, 1173, 1199, 1323
Tru9I TTAA 7 cut(s) 156, 552, 665, 1073, 1173, 1199, 1323
TscAI CASTG 2 cut(s) 702, 744
TseFI GTSAC 3 cut(s) 1055, 1310, 1415
TseI GCWGC 2 cut(s) 570, 1226
Tsp45I GTSAC 3 cut(s) 1055, 1310, 1415
TspDTI ATGAA 9 cut(s) 130, 165, 570, 642, 836, 902, 993, 1410, 1644
TspGWI ACGGA 2 cut(s) 276, 909
TspRI CASTG 2 cut(s) 702, 744
VpaK11BI GGWCC 2 cut(s) 427, 471
VspI ATTAAT 1 cut(s) 552
XapI RAATTY 2 cut(s) 71, 415
XbaI TCTAGA 1 cut(s) 1442
XceI RCATGY 3 cut(s) 411, 545, 1381
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmiI GTMKAC 2 cut(s) 397, 806
XspI CTAG 5 cut(s) 116, 1443, 1578, 1664, 1674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.