Rmu_sc0007968.1_g000002

Zinc finger domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007968.1
Physical Location & Seq
Reverse (-)
6258 .. 8605
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007968.1_g000002.1.cds

Sequence Viewer

Length: 1623 bp
atgctcaagcttttcaaaaccggccatggaattctctatcccatcctcctcagaaaccccaaattcctgacacccatttcacaatttcacatctccagcgaaaccctagctcccagtcggaagctcgaattcgtagtcaatgaagttcaacagcttcgatcatcaaatcccagtaatgaatttgtatcggcctcagacaccgacgaaccgtcgggcccggccaacgaggaaggttttgcggtccagatttcgcatccatggcgggaatgggtggacctgatggagcttttgctgaagagaggctattttgaaggagacgaaaacccgtttcggaacggcgaagttggtccaaaggaatcgaaccgtatccgaaccgcttgccttaattttgctagggaccggtcgagtcttctgaggttattgtcaaggaaagatgtccagattattgcagggtatggatgcccaagcatagacaggaaagttgtcaactcaggaaagcggctaagggcacatgtcggggttgatgaaggagatgtgtgcagctcctgcggtttgagaggcgactgtgagagagcatatgtaaaggcccgtgaagatgaaggtggacgtactgtggatgttatgcgattcttgttaacgcatgggcttgatccccttactgatacattggggaacaagccttctctaaataaaaaggtcaaagaatcagtgagaaggctattgaaagagatggtggagtacagcactgataagcttgataccgatctcccaacgaacatgactttaaaaggggttaaaccctcgccaaaacatgcaatgccacaagaaaagcacaacataaatgttccaatgaagcaaggcgattggatctgccccaaatgcaacttcctcaattttgccagaaatgttaagtgcttacgttgtgatggtctattccaagagagactggcgaaactaagggaggatcaggatcatcttccattgaagaagggggactggatatgtgaaaaatgcaatttcctaaattttgccaagaacagtagatgcttgcagtgcaaagagaagccacccaagcgagagctaaatcctggagagtgggagtgtgactcctgcaattacatcaattttaggaaaaacatgctatgcttaaaatgtgatcataaaaggcccaagacgtctgctgaacctatacatgaagatggaggctaccataacagtaatagtgttagttttggtgacactaatgttaatgatcgatcctactcaggacaaggtagaaatggtcaaaacagaggtgcaggcaggtggagatttgtggttgaagagaatgatgatcatagccactcaaactcattagataagacttccaggtttgtagacttcccaattgcaggaggtaagactgaactgtctcagaatccacaaaagaggaacagatggaagttgaagatgttagagaagagcaaaggaggcacaatggatatggcaagtgatgatgaacttaggtctaccagtaatgaaagaagagtattgttttctgattctacggatgatgaagagatggccgagtggtttggggatagaaagctagaaacacaaaggcttccatctaggcctaactaa

Protein Analysis

540

Amino Acids

61.62

Weight (kDa)

8.69

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1293
AasI GACNNNNNNGTC 1 cut(s) 1408
AatII GACGTC 1 cut(s) 1178
Acc36I ACCTGC 1 cut(s) 1293
AccI GTMKAC 2 cut(s) 1377, 1508
AciI CCGC 5 cut(s) 239, 262, 375, 499, 549
AclWI GGATC 5 cut(s) 644, 875, 972, 978, 1251
AcoI YGGCCR 3 cut(s) 22, 219, 1563
AcsI RAATTY 5 cut(s) 30, 62, 128, 179, 1024
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 1175
AfaI GTAC 2 cut(s) 610, 740
AfiI CCNNNNNNNGG 1 cut(s) 1391
AflIII ACRYGT 1 cut(s) 511
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 7 cut(s) 16, 149, 311, 724, 985, 1322, 1447
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 2 cut(s) 1087, 1367
AjuI GAANNNNNNNTTGG 2 cut(s) 869, 901
AluBI AGCT 9 cut(s) 10, 110, 124, 154, 286, 543, 754, 1081, 1588
AluI AGCT 9 cut(s) 10, 110, 124, 154, 286, 543, 754, 1081, 1588
Alw26I GTCTC 3 cut(s) 309, 937, 1416
AlwI GGATC 5 cut(s) 644, 875, 972, 978, 1251
AlwNI CAGNNNCTG 1 cut(s) 546
AoxI GGCC 8 cut(s) 22, 189, 214, 219, 585, 1166, 1563, 1613
ApaI GGGCCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 540
ApoI RAATTY 5 cut(s) 30, 62, 128, 179, 1024
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AsiGI ACCGGT 1 cut(s) 399
AspS9I GGNCC 8 cut(s) 214, 215, 241, 274, 347, 397, 586, 1167
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 1247
AvaII GGWCC 4 cut(s) 241, 274, 347, 397
BaeGI GKGCMC 2 cut(s) 218, 511
BanII GRGCYC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 552
BccI CCATC 8 cut(s) 50, 274, 724, 920, 1193, 1431, 1555, 1615
BceAI ACGGC 1 cut(s) 352
BcgI CGANNNNNNTGC 2 cut(s) 360, 394
BciT130I CCWGG 2 cut(s) 1089, 1369
BciVI GTATCC 1 cut(s) 377
BclI TGATCA 2 cut(s) 1156, 1333
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 3 cut(s) 309, 937, 1416
BfaI CTAG 4 cut(s) 107, 393, 1589, 1611
BfuAI ACCTGC 1 cut(s) 1293
BfuI GTATCC 1 cut(s) 377
BisI GCNGC 2 cut(s) 500, 541
BlsI GCNGC 2 cut(s) 501, 542
Bme1390I CCNGG 3 cut(s) 218, 1089, 1369
Bme18I GGWCC 4 cut(s) 241, 274, 347, 397
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgT120I GGNCC 8 cut(s) 214, 215, 241, 274, 347, 397, 586, 1167
BmiI GGNNCC 2 cut(s) 216, 398
BmrFI CCNGG 3 cut(s) 218, 1089, 1369
BmrI ACTGGG 2 cut(s) 108, 165
BmsI GCATC 3 cut(s) 262, 449, 1034
BmuI ACTGGG 2 cut(s) 108, 165
BpiI GAAGAC 1 cut(s) 401
BplI GAGNNNNNCTC 2 cut(s) 1091, 1123
BpmI CTGGAG 2 cut(s) 79, 1110
Bpu10I CCTNAGC 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 1255
BsaBI GATNNNNATC 2 cut(s) 762, 969
BsaHI GRCGYC 1 cut(s) 1175
BsaJI CCNNGG 2 cut(s) 25, 257
BsaWI WCCGGW 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 1391
Bse118I RCCGGY 2 cut(s) 20, 399
Bse1I ACTGG 5 cut(s) 114, 171, 951, 1001, 1512
Bse3DI GCAATG 1 cut(s) 822
Bse8I GATNNNNATC 2 cut(s) 762, 969
BseBI CCWGG 2 cut(s) 1089, 1369
BseCI ATCGAT 1 cut(s) 1255
BseDI CCNNGG 2 cut(s) 25, 257
BseGI GGATG 5 cut(s) 42, 253, 464, 622, 1555
BseJI GATNNNNATC 2 cut(s) 762, 969
BseLI CCNNNNNNNGG 1 cut(s) 1391
BseMI GCAATG 1 cut(s) 822
BseMII CTCAG 6 cut(s) 64, 207, 404, 504, 1278, 1427
BseNI ACTGG 5 cut(s) 114, 171, 951, 1001, 1512
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 2 cut(s) 218, 511
BseXI GCAGC 1 cut(s) 552
BsgI GTGCAG 2 cut(s) 559, 1317
Bsh1285I CGRYCG 1 cut(s) 404
BshFI GGCC 8 cut(s) 24, 191, 216, 221, 587, 1168, 1565, 1615
BshTI ACCGGT 1 cut(s) 399
BshVI ATCGAT 1 cut(s) 1255
BsiEI CGRYCG 1 cut(s) 404
BsiSI CCGG 3 cut(s) 21, 218, 400
BslFI GGGAC 2 cut(s) 410, 1007
BslI CCNNNNNNNGG 1 cut(s) 1391
BsmAI GTCTC 3 cut(s) 309, 937, 1416
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 410, 1007
BsnI GGCC 8 cut(s) 24, 191, 216, 221, 587, 1168, 1565, 1615
Bsp120I GGGCCC 1 cut(s) 214
Bsp1286I GDGCHC 2 cut(s) 218, 511
Bsp19I CCATGG 2 cut(s) 25, 257
BspACI CCGC 5 cut(s) 239, 262, 375, 499, 549
BspANI GGCC 8 cut(s) 24, 191, 216, 221, 587, 1168, 1565, 1615
BspCNI CTCAG 6 cut(s) 63, 206, 405, 503, 1277, 1426
BspDI ATCGAT 1 cut(s) 1255
BspLI GGNNCC 2 cut(s) 216, 398
BspMI ACCTGC 1 cut(s) 1293
BspPI GGATC 5 cut(s) 644, 875, 972, 978, 1251
BspQI GCTCTTC 1 cut(s) 1454
BsrDI GCAATG 1 cut(s) 822
BsrFI RCCGGY 2 cut(s) 20, 399
BsrI ACTGG 5 cut(s) 114, 171, 951, 1001, 1512
BssAI RCCGGY 2 cut(s) 20, 399
BssECI CCNNGG 2 cut(s) 25, 257
BssNI GRCGYC 1 cut(s) 1175
BssT1I CCWWGG 2 cut(s) 25, 257
Bst2UI CCWGG 2 cut(s) 1089, 1369
Bst4CI ACNGT 7 cut(s) 210, 365, 566, 613, 1040, 1217, 1410
Bst6I CTCTTC 5 cut(s) 290, 1317, 1454, 1519, 1551
BstACI GRCGYC 1 cut(s) 1175
BstAPI GCANNNNNTGC 1 cut(s) 546
BstC8I GCNNGC 3 cut(s) 379, 1049, 1300
BstDEI CTNAG 9 cut(s) 50, 193, 413, 490, 503, 956, 1264, 1413, 1502
BstDSI CCRYGG 2 cut(s) 25, 257
BstF5I GGATG 5 cut(s) 42, 253, 464, 622, 1555
BstMAI GTCTC 3 cut(s) 309, 937, 1416
BstMCI CGRYCG 1 cut(s) 404
BstMWI GCNNNNNNNGC 6 cut(s) 259, 546, 879, 1053, 1072, 1470
BstNI CCWGG 2 cut(s) 1089, 1369
BstNSI RCATGY 3 cut(s) 515, 815, 1141
BstSCI CCNGG 3 cut(s) 216, 1087, 1367
BstSLI GKGCMC 2 cut(s) 218, 511
BstV1I GCAGC 1 cut(s) 552
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 867
BstYI RGATCY 1 cut(s) 867
Bsu15I ATCGAT 1 cut(s) 1255
BsuI GTATCC 1 cut(s) 377
BsuRI GGCC 8 cut(s) 24, 191, 216, 221, 587, 1168, 1565, 1615
BsuTUI ATCGAT 1 cut(s) 1255
BtgI CCRYGG 2 cut(s) 25, 257
BtsCI GGATG 5 cut(s) 42, 253, 464, 622, 1555
BtsI GCAGTG 1 cut(s) 1058
BtsIMutI CAGTG 3 cut(s) 714, 744, 1058
BveI ACCTGC 1 cut(s) 1293
Cac8I GCNNGC 3 cut(s) 379, 1049, 1300
CaiI CAGNNNCTG 1 cut(s) 546
Cfr10I RCCGGY 2 cut(s) 20, 399
Cfr13I GGNCC 8 cut(s) 214, 215, 241, 274, 347, 397, 586, 1167
ClaI ATCGAT 1 cut(s) 1255
Csp6I GTAC 2 cut(s) 609, 739
CspAI ACCGGT 1 cut(s) 399
CviAII CATG 8 cut(s) 26, 258, 512, 641, 778, 812, 1138, 1193
CviQI GTAC 2 cut(s) 609, 739
DdeI CTNAG 9 cut(s) 50, 193, 413, 490, 503, 956, 1264, 1413, 1502
DraI TTTAAA 1 cut(s) 786
DrdI GACNNNNNNGTC 1 cut(s) 1408
DriI GACNNNNNGTC 1 cut(s) 208
DseDI GACNNNNNNGTC 1 cut(s) 1408
EaeI YGGCCR 3 cut(s) 22, 219, 1563
Eam1104I CTCTTC 5 cut(s) 290, 1317, 1454, 1519, 1551
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 5 cut(s) 290, 1317, 1454, 1519, 1551
Eco130I CCWWGG 2 cut(s) 25, 257
Eco147I AGGCCT 1 cut(s) 1615
Eco24I GRGCYC 1 cut(s) 218
Eco47I GGWCC 4 cut(s) 241, 274, 347, 397
Eco57I CTGAAG 1 cut(s) 314
EcoRI GAATTC 2 cut(s) 30, 128
EcoRII CCWGG 2 cut(s) 1087, 1367
EcoT14I CCWWGG 2 cut(s) 25, 257
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 2 cut(s) 25, 257
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 8 cut(s) 29, 261, 515, 644, 781, 815, 1141, 1196
FaqI GGGAC 2 cut(s) 410, 1007
FatI CATG 8 cut(s) 25, 257, 511, 640, 777, 811, 1137, 1192
FauI CCCGC 1 cut(s) 255
FauNDI CATATG 1 cut(s) 577
FbaI TGATCA 2 cut(s) 1156, 1333
FblI GTMKAC 2 cut(s) 1377, 1508
Fnu4HI GCNGC 2 cut(s) 500, 541
FokI GGATG 5 cut(s) 29, 240, 471, 629, 1562
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 500, 541
FspBI CTAG 4 cut(s) 107, 393, 1589, 1611
GluI GCNGC 2 cut(s) 500, 541
GsuI CTGGAG 2 cut(s) 79, 1110
HaeIII GGCC 8 cut(s) 24, 191, 216, 221, 587, 1168, 1565, 1615
HapII CCGG 3 cut(s) 21, 218, 400
Hin1I GRCGYC 1 cut(s) 1175
Hin1II CATG 8 cut(s) 29, 261, 515, 644, 781, 815, 1141, 1196
HincII GTYRAC 2 cut(s) 487, 636
HindII GTYRAC 2 cut(s) 487, 636
HindIII AAGCTT 2 cut(s) 8, 752
HinfI GANTC 7 cut(s) 356, 406, 627, 704, 1106, 1417, 1541
HpaI GTTAAC 1 cut(s) 636
HpaII CCGG 3 cut(s) 21, 218, 400
HphI GGTGA 1 cut(s) 1247
Hpy166II GTNNAC 6 cut(s) 274, 487, 605, 636, 1378, 1509
Hpy188I TCNGA 8 cut(s) 53, 120, 196, 333, 371, 414, 1416, 1540
Hpy188III TCNNGA 6 cut(s) 67, 244, 439, 492, 968, 1266
Hpy8I GTNNAC 6 cut(s) 274, 487, 605, 636, 1378, 1509
Hpy99I CGWCG 2 cut(s) 206, 214
HpyAV CCTTC 7 cut(s) 224, 305, 521, 593, 690, 708, 982
HpyCH4III ACNGT 7 cut(s) 210, 365, 566, 613, 1040, 1217, 1410
HpyCH4IV ACGT 3 cut(s) 607, 919, 1175
HpyF10VI GCNNNNNNNGC 6 cut(s) 259, 546, 879, 1053, 1072, 1470
HpyF3I CTNAG 9 cut(s) 50, 193, 413, 490, 503, 956, 1264, 1413, 1502
HpySE526I ACGT 3 cut(s) 607, 919, 1175
Hsp92I GRCGYC 1 cut(s) 1175
Hsp92II CATG 8 cut(s) 29, 261, 515, 644, 781, 815, 1141, 1196
Ksp22I TGATCA 2 cut(s) 1156, 1333
KspAI GTTAAC 1 cut(s) 636
LguI GCTCTTC 1 cut(s) 1454
LmnI GCTCC 3 cut(s) 115, 283, 548
Lsp1109I GCAGC 1 cut(s) 552
LweI GCATC 3 cut(s) 262, 449, 1034
MaeI CTAG 4 cut(s) 107, 393, 1589, 1611
MaeII ACGT 3 cut(s) 607, 919, 1175
MaeIII GTNAC 2 cut(s) 1103, 1235
MfeI CAATTG 1 cut(s) 1386
MflI RGATCY 1 cut(s) 867
MhlI GDGCHC 2 cut(s) 218, 511
MlyI GAGTC 2 cut(s) 415, 1100
MmeI TCCRAC 1 cut(s) 98
MseI TTAA 7 cut(s) 384, 635, 785, 795, 909, 1148, 1248
MslI CAYNNNNRTG 1 cut(s) 1197
MspI CCGG 3 cut(s) 21, 218, 400
MspR9I CCNGG 3 cut(s) 218, 1089, 1369
MunI CAATTG 1 cut(s) 1386
MvaI CCWGG 2 cut(s) 1089, 1369
MwoI GCNNNNNNNGC 6 cut(s) 259, 546, 879, 1053, 1072, 1470
NciI CCSGG 1 cut(s) 218
NcoI CCATGG 2 cut(s) 25, 257
NdeI CATATG 1 cut(s) 577
NlaIII CATG 8 cut(s) 29, 261, 515, 644, 781, 815, 1141, 1196
NlaIV GGNNCC 2 cut(s) 216, 398
NmeAIII GCCGAG 1 cut(s) 1591
NmuCI GTSAC 2 cut(s) 1103, 1235
NspI RCATGY 3 cut(s) 515, 815, 1141
PaqCI CACCTGC 1 cut(s) 1293
PceI AGGCCT 1 cut(s) 1615
PciI ACATGT 1 cut(s) 511
PciSI GCTCTTC 1 cut(s) 1454
PfeI GAWTC 5 cut(s) 356, 627, 704, 1417, 1541
PfoI TCCNGGA 1 cut(s) 1087
PinAI ACCGGT 1 cut(s) 399
PkrI GCNGC 2 cut(s) 501, 542
PleI GAGTC 2 cut(s) 414, 1100
PpsI GAGTC 2 cut(s) 414, 1100
PscI ACATGT 1 cut(s) 511
Psp6I CCWGG 2 cut(s) 1087, 1367
PspGI CCWGG 2 cut(s) 1087, 1367
PspN4I GGNNCC 2 cut(s) 216, 398
PspOMI GGGCCC 1 cut(s) 214
PspPI GGNCC 8 cut(s) 214, 215, 241, 274, 347, 397, 586, 1167
PstNI CAGNNNCTG 1 cut(s) 546
PsuI RGATCY 1 cut(s) 867
RsaI GTAC 2 cut(s) 610, 740
RsaNI GTAC 2 cut(s) 609, 739
RseI CAYNNNNRTG 1 cut(s) 1197
SapI GCTCTTC 1 cut(s) 1454
SaqAI TTAA 7 cut(s) 384, 635, 785, 795, 909, 1148, 1248
SatI GCNGC 2 cut(s) 500, 541
Sau96I GGNCC 8 cut(s) 214, 215, 241, 274, 347, 397, 586, 1167
SchI GAGTC 2 cut(s) 415, 1100
ScrFI CCNGG 3 cut(s) 218, 1089, 1369
SduI GDGCHC 2 cut(s) 218, 511
SfaNI GCATC 3 cut(s) 262, 449, 1034
SinI GGWCC 4 cut(s) 241, 274, 347, 397
SmiMI CAYNNNNRTG 1 cut(s) 1197
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SseBI AGGCCT 1 cut(s) 1615
SsiI CCGC 5 cut(s) 239, 262, 375, 499, 549
SspMI CTAG 4 cut(s) 107, 393, 1589, 1611
StuI AGGCCT 1 cut(s) 1615
StyD4I CCNGG 3 cut(s) 216, 1087, 1367
StyI CCWWGG 2 cut(s) 25, 257
TaaI ACNGT 7 cut(s) 210, 365, 566, 613, 1040, 1217, 1410
TaiI ACGT 3 cut(s) 610, 922, 1178
TaqI TCGA 5 cut(s) 126, 157, 359, 404, 1255
TatI WGTACW 1 cut(s) 738
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 5 cut(s) 356, 627, 704, 1417, 1541
Tru1I TTAA 7 cut(s) 384, 635, 785, 795, 909, 1148, 1248
Tru9I TTAA 7 cut(s) 384, 635, 785, 795, 909, 1148, 1248
TscAI CASTG 3 cut(s) 714, 751, 1058
TseFI GTSAC 2 cut(s) 1103, 1235
TseI GCWGC 1 cut(s) 540
Tsp45I GTSAC 2 cut(s) 1103, 1235
TspDTI ATGAA 9 cut(s) 156, 192, 540, 612, 866, 1209, 1512, 1533, 1569
TspGWI ACGGA 1 cut(s) 1562
TspRI CASTG 3 cut(s) 714, 751, 1058
VpaK11BI GGWCC 4 cut(s) 241, 274, 347, 397
XapI RAATTY 5 cut(s) 30, 62, 128, 179, 1024
XceI RCATGY 3 cut(s) 515, 815, 1141
XcmI CCANNNNNNNNNTGG 1 cut(s) 264
XmiI GTMKAC 2 cut(s) 1377, 1508
XspI CTAG 4 cut(s) 107, 393, 1589, 1611
ZraI GACGTC 1 cut(s) 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.