Rmu_sc0018919.1_g000002

Zinc finger domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018919.1
Physical Location & Seq
Reverse (-)
6451 .. 8897
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018919.1_g000002.1.cds

Sequence Viewer

Length: 1722 bp
atgcttattccgtcgttagaggcacctccaaacttcagtcaccgactcagcgtaacagtcaggcgggtgattttttccgccaaaaacagcgcagttcaaatgcacaagcttttcaaaaccggccatggaattctctatcccatcctcctcagaaaccccaaattcctgacacccatttcacaatttcacatctccagcgaaaccctagctcccaatcggaagctcgaattcgtagtcaatgaagttcaacagcttcgatcatcaaatcccagtaatgaatttgtctcggcctcagacaccgacgaaccgtccggcccggccaacgtggaaggttttgcggtccagatttcgcatccatggcgggaatgggtggacctgatggagctcttgctgaagagaggctattttgaaggagacgaaaacccgtttcggaacggtgaagttggtccaaaggaatcgaaccgtatccgaaccgcttgccttaattttgctagggaccggtcgagtcttctgaggttattgtcaaggaaagatgtccagattattgcagggtatggatgcccaagcatagacaggaaagttgtcaactcaggaaagcggctaagggcacatgtcggggttgatgaaggagatgtgtgcagctcctgcggtttgagaggcgactgtgagagagcatatgtaaaggcccgtgaagatgaaggtggacgtactgtggatgttatgcgattcttgttaacgcatgggcttgatccccttactgatacattggggaacaagccttctctaaataaaaaggtcaaagaatcagtgagaaggctattgaaagagatggtggagtacagcactgataagcttgataccgatctcccaacgaacatgactttaaaaggggttaaaccctcgccaaaacatgcaatgccacaagaaaagcacaacataaatgttccaatgaagcaaggcgattggatctgccccaaatgcaacttcctcaattttgccagaaatgttaagtgcttacgttgtgatggtctattccaagagagactggcgaaactaagggaggatcaggatcatcttccattgaagaagggggactggatatgtgaaaaatgcaatttcctaaattttgccaagaacagtagatgcttgcagtgcaaagagaagccacccaagcgagagctaaatcctggagagtgggagtgtgactcctgcaattacatcaattttaggaaaaacatgctatgcttaaaatgtgatcacaaaaggcccaagacttctgctgaacctatacatgaagatggaggctaccaaaacagtaatagtgttagttttggtgacactaatgttaatgatcgatcctactcaggacaaggtagaaatggtcaaaacagaggtgcaggcaggtggagatttgtggttgaagagaatgatgatcatagccactcaaactcattagataagacttccaggtttgtagacttcccaattgcaggaggtaagactgaactgtctcagaatccacaaaagaggaacagatggaagttgaagatgttagagaagagcaaaggaggcacaatggatatggcaagtgatgatgaacttaggtctaccagtaatgaaagaagagtattgttttctgattctacggatgatgaagagatggccgagtggtttggggatagaaagctagaaacacaaaggcttccatctaggcctaactaa

Protein Analysis

573

Amino Acids

65.28

Weight (kDa)

8.94

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1392
AasI GACNNNNNNGTC 1 cut(s) 1507
Acc36I ACCTGC 1 cut(s) 1392
AccB1I GGYRCC 1 cut(s) 22
AccI GTMKAC 2 cut(s) 1476, 1607
AciI CCGC 7 cut(s) 64, 78, 338, 361, 474, 598, 648
AclWI GGATC 5 cut(s) 743, 974, 1071, 1077, 1350
AcoI YGGCCR 3 cut(s) 121, 318, 1662
AcsI RAATTY 5 cut(s) 129, 161, 227, 278, 1123
AcuI CTGAAG 2 cut(s) 19, 413
AfaI GTAC 2 cut(s) 709, 839
AfiI CCNNNNNNNGG 1 cut(s) 1490
AflIII ACRYGT 1 cut(s) 610
AgeI ACCGGT 1 cut(s) 498
AgsI TTSAA 8 cut(s) 98, 115, 248, 410, 823, 1084, 1421, 1546
AhdI GACNNNNNGTC 1 cut(s) 307
AjnI CCWGG 2 cut(s) 1186, 1466
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
AluBI AGCT 9 cut(s) 109, 209, 223, 253, 385, 642, 853, 1180, 1687
AluI AGCT 9 cut(s) 109, 209, 223, 253, 385, 642, 853, 1180, 1687
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 4 cut(s) 289, 408, 1036, 1515
AlwI GGATC 5 cut(s) 743, 974, 1071, 1077, 1350
AlwNI CAGNNNCTG 1 cut(s) 645
AoxI GGCC 8 cut(s) 121, 288, 313, 318, 684, 1265, 1662, 1712
ApeKI GCWGC 1 cut(s) 639
ApoI RAATTY 5 cut(s) 129, 161, 227, 278, 1123
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AsiGI ACCGGT 1 cut(s) 498
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 7 cut(s) 314, 340, 373, 446, 496, 685, 1266
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 4 cut(s) 32, 79, 449, 1346
AvaII GGWCC 4 cut(s) 340, 373, 446, 496
BaeGI GKGCMC 1 cut(s) 610
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 651
BccI CCATC 8 cut(s) 149, 373, 823, 1019, 1292, 1530, 1654, 1714
BcgI CGANNNNNNTGC 2 cut(s) 459, 493
BciT130I CCWGG 2 cut(s) 1188, 1468
BciVI GTATCC 1 cut(s) 476
BclI TGATCA 2 cut(s) 1255, 1432
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 4 cut(s) 289, 408, 1036, 1515
BfaI CTAG 4 cut(s) 206, 492, 1688, 1710
BfuAI ACCTGC 1 cut(s) 1392
BfuI GTATCC 1 cut(s) 476
BisI GCNGC 2 cut(s) 599, 640
BlsI GCNGC 2 cut(s) 600, 641
Bme1390I CCNGG 3 cut(s) 317, 1188, 1468
Bme18I GGWCC 4 cut(s) 340, 373, 446, 496
BmeRI GACNNNNNGTC 1 cut(s) 307
BmgT120I GGNCC 7 cut(s) 314, 340, 373, 446, 496, 685, 1266
BmiI GGNNCC 2 cut(s) 24, 497
BmrFI CCNGG 3 cut(s) 317, 1188, 1468
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 3 cut(s) 361, 548, 1133
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 500
BplI GAGNNNNNCTC 2 cut(s) 1190, 1222
BpmI CTGGAG 2 cut(s) 178, 1209
Bpu10I CCTNAGC 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 1354
BsaBI GATNNNNATC 2 cut(s) 861, 1068
BsaJI CCNNGG 2 cut(s) 124, 356
BsaWI WCCGGW 1 cut(s) 498
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 1490
Bse118I RCCGGY 2 cut(s) 119, 498
Bse1I ACTGG 4 cut(s) 270, 1050, 1100, 1611
Bse3DI GCAATG 1 cut(s) 921
Bse8I GATNNNNATC 2 cut(s) 861, 1068
BseBI CCWGG 2 cut(s) 1188, 1468
BseCI ATCGAT 1 cut(s) 1354
BseDI CCNNGG 2 cut(s) 124, 356
BseGI GGATG 5 cut(s) 141, 352, 563, 721, 1654
BseJI GATNNNNATC 2 cut(s) 861, 1068
BseLI CCNNNNNNNGG 1 cut(s) 1490
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 7 cut(s) 61, 163, 306, 503, 603, 1377, 1526
BseNI ACTGG 4 cut(s) 270, 1050, 1100, 1611
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 1 cut(s) 651
BsgI GTGCAG 2 cut(s) 658, 1416
Bsh1285I CGRYCG 1 cut(s) 503
BshFI GGCC 8 cut(s) 123, 290, 315, 320, 686, 1267, 1664, 1714
BshNI GGYRCC 1 cut(s) 22
BshTI ACCGGT 1 cut(s) 498
BshVI ATCGAT 1 cut(s) 1354
BsiEI CGRYCG 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 4 cut(s) 120, 312, 317, 499
BslFI GGGAC 2 cut(s) 509, 1106
BslI CCNNNNNNNGG 1 cut(s) 1490
BsmAI GTCTC 4 cut(s) 289, 408, 1036, 1515
BsmBI CGTCTC 1 cut(s) 408
BsmFI GGGAC 2 cut(s) 509, 1106
BsnI GGCC 8 cut(s) 123, 290, 315, 320, 686, 1267, 1664, 1714
Bsp1286I GDGCHC 2 cut(s) 387, 610
Bsp19I CCATGG 2 cut(s) 124, 356
BspACI CCGC 7 cut(s) 64, 78, 338, 361, 474, 598, 648
BspANI GGCC 8 cut(s) 123, 290, 315, 320, 686, 1267, 1664, 1714
BspCNI CTCAG 7 cut(s) 60, 162, 305, 504, 602, 1376, 1525
BspDI ATCGAT 1 cut(s) 1354
BspLI GGNNCC 2 cut(s) 24, 497
BspMI ACCTGC 1 cut(s) 1392
BspPI GGATC 5 cut(s) 743, 974, 1071, 1077, 1350
BspQI GCTCTTC 1 cut(s) 1553
BspT107I GGYRCC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 921
BsrFI RCCGGY 2 cut(s) 119, 498
BsrI ACTGG 4 cut(s) 270, 1050, 1100, 1611
BssAI RCCGGY 2 cut(s) 119, 498
BssECI CCNNGG 2 cut(s) 124, 356
BssT1I CCWWGG 2 cut(s) 124, 356
Bst2UI CCWGG 2 cut(s) 1188, 1468
Bst4CI ACNGT 9 cut(s) 58, 309, 437, 464, 665, 712, 1139, 1316, 1509
Bst6I CTCTTC 5 cut(s) 389, 1416, 1553, 1618, 1650
BstAPI GCANNNNNTGC 1 cut(s) 645
BstC8I GCNNGC 3 cut(s) 478, 1148, 1399
BstDSI CCRYGG 2 cut(s) 124, 356
BstF5I GGATG 5 cut(s) 141, 352, 563, 721, 1654
BstHHI GCGC 1 cut(s) 92
BstMAI GTCTC 4 cut(s) 289, 408, 1036, 1515
BstMCI CGRYCG 1 cut(s) 503
BstMWI GCNNNNNNNGC 6 cut(s) 358, 645, 978, 1152, 1171, 1569
BstNI CCWGG 2 cut(s) 1188, 1468
BstNSI RCATGY 3 cut(s) 614, 914, 1240
BstSCI CCNGG 3 cut(s) 315, 1186, 1466
BstSLI GKGCMC 1 cut(s) 610
BstV1I GCAGC 1 cut(s) 651
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 966
BstYI RGATCY 1 cut(s) 966
Bsu15I ATCGAT 1 cut(s) 1354
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 8 cut(s) 123, 290, 315, 320, 686, 1267, 1664, 1714
BsuTUI ATCGAT 1 cut(s) 1354
BtgI CCRYGG 2 cut(s) 124, 356
BtsCI GGATG 5 cut(s) 141, 352, 563, 721, 1654
BtsI GCAGTG 1 cut(s) 1157
BtsIMutI CAGTG 3 cut(s) 813, 843, 1157
BveI ACCTGC 1 cut(s) 1392
Cac8I GCNNGC 3 cut(s) 478, 1148, 1399
CaiI CAGNNNCTG 1 cut(s) 645
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 2 cut(s) 119, 498
Cfr13I GGNCC 7 cut(s) 314, 340, 373, 446, 496, 685, 1266
ClaI ATCGAT 1 cut(s) 1354
Csp6I GTAC 2 cut(s) 708, 838
CspAI ACCGGT 1 cut(s) 498
CviAII CATG 8 cut(s) 125, 357, 611, 740, 877, 911, 1237, 1292
CviQI GTAC 2 cut(s) 708, 838
DraI TTTAAA 1 cut(s) 885
DrdI GACNNNNNNGTC 1 cut(s) 1507
DriI GACNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 1507
EaeI YGGCCR 3 cut(s) 121, 318, 1662
Eam1104I CTCTTC 5 cut(s) 389, 1416, 1553, 1618, 1650
Eam1105I GACNNNNNGTC 1 cut(s) 307
EarI CTCTTC 5 cut(s) 389, 1416, 1553, 1618, 1650
EciI GGCGGA 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 385
Eco130I CCWWGG 2 cut(s) 124, 356
Eco147I AGGCCT 1 cut(s) 1714
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 4 cut(s) 340, 373, 446, 496
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 19, 413
EcoICRI GAGCTC 1 cut(s) 385
EcoRI GAATTC 2 cut(s) 129, 227
EcoRII CCWGG 2 cut(s) 1186, 1466
EcoT14I CCWWGG 2 cut(s) 124, 356
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 2 cut(s) 124, 356
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 8 cut(s) 128, 360, 614, 743, 880, 914, 1240, 1295
FaqI GGGAC 2 cut(s) 509, 1106
FatI CATG 8 cut(s) 124, 356, 610, 739, 876, 910, 1236, 1291
FauI CCCGC 2 cut(s) 57, 354
FauNDI CATATG 1 cut(s) 676
FbaI TGATCA 2 cut(s) 1255, 1432
FblI GTMKAC 2 cut(s) 1476, 1607
Fnu4HI GCNGC 2 cut(s) 599, 640
FokI GGATG 5 cut(s) 128, 339, 570, 728, 1661
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 2 cut(s) 599, 640
FspBI CTAG 4 cut(s) 206, 492, 1688, 1710
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 599, 640
GsuI CTGGAG 2 cut(s) 178, 1209
HaeIII GGCC 8 cut(s) 123, 290, 315, 320, 686, 1267, 1664, 1714
HapII CCGG 4 cut(s) 120, 312, 317, 499
HhaI GCGC 1 cut(s) 92
Hin1II CATG 8 cut(s) 128, 360, 614, 743, 880, 914, 1240, 1295
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 2 cut(s) 586, 735
HindII GTYRAC 2 cut(s) 586, 735
HindIII AAGCTT 2 cut(s) 107, 851
HinfI GANTC 8 cut(s) 45, 455, 505, 726, 803, 1205, 1516, 1640
HpaI GTTAAC 1 cut(s) 735
HpaII CCGG 4 cut(s) 120, 312, 317, 499
HphI GGTGA 4 cut(s) 32, 79, 449, 1346
Hpy166II GTNNAC 6 cut(s) 373, 586, 704, 735, 1477, 1608
Hpy188I TCNGA 8 cut(s) 152, 219, 295, 432, 470, 513, 1515, 1639
Hpy188III TCNNGA 6 cut(s) 166, 343, 538, 591, 1067, 1365
Hpy8I GTNNAC 6 cut(s) 373, 586, 704, 735, 1477, 1608
Hpy99I CGWCG 2 cut(s) 16, 305
HpyAV CCTTC 7 cut(s) 323, 404, 620, 692, 789, 807, 1081
HpyCH4III ACNGT 9 cut(s) 58, 309, 437, 464, 665, 712, 1139, 1316, 1509
HpyCH4IV ACGT 3 cut(s) 324, 706, 1018
HpyF10VI GCNNNNNNNGC 6 cut(s) 358, 645, 978, 1152, 1171, 1569
HpySE526I ACGT 3 cut(s) 324, 706, 1018
Hsp92II CATG 8 cut(s) 128, 360, 614, 743, 880, 914, 1240, 1295
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 2 cut(s) 1255, 1432
KspAI GTTAAC 1 cut(s) 735
LguI GCTCTTC 1 cut(s) 1553
LmnI GCTCC 3 cut(s) 214, 382, 647
Lsp1109I GCAGC 1 cut(s) 651
LweI GCATC 3 cut(s) 361, 548, 1133
MaeI CTAG 4 cut(s) 206, 492, 1688, 1710
MaeII ACGT 3 cut(s) 324, 706, 1018
MaeIII GTNAC 4 cut(s) 38, 52, 1202, 1334
MfeI CAATTG 1 cut(s) 1485
MflI RGATCY 1 cut(s) 966
MhlI GDGCHC 2 cut(s) 387, 610
MlyI GAGTC 3 cut(s) 39, 514, 1199
MseI TTAA 7 cut(s) 483, 734, 884, 894, 1008, 1247, 1347
MslI CAYNNNNRTG 1 cut(s) 1296
MspI CCGG 4 cut(s) 120, 312, 317, 499
MspR9I CCNGG 3 cut(s) 317, 1188, 1468
MunI CAATTG 1 cut(s) 1485
MvaI CCWGG 2 cut(s) 1188, 1468
MwoI GCNNNNNNNGC 6 cut(s) 358, 645, 978, 1152, 1171, 1569
NciI CCSGG 1 cut(s) 317
NcoI CCATGG 2 cut(s) 124, 356
NdeI CATATG 1 cut(s) 676
NlaIII CATG 8 cut(s) 128, 360, 614, 743, 880, 914, 1240, 1295
NlaIV GGNNCC 2 cut(s) 24, 497
NmeAIII GCCGAG 2 cut(s) 266, 1690
NmuCI GTSAC 3 cut(s) 38, 1202, 1334
NspI RCATGY 3 cut(s) 614, 914, 1240
PaqCI CACCTGC 1 cut(s) 1392
PceI AGGCCT 1 cut(s) 1714
PciI ACATGT 1 cut(s) 610
PciSI GCTCTTC 1 cut(s) 1553
PfeI GAWTC 5 cut(s) 455, 726, 803, 1516, 1640
PfoI TCCNGGA 1 cut(s) 1186
PinAI ACCGGT 1 cut(s) 498
PkrI GCNGC 2 cut(s) 600, 641
PleI GAGTC 3 cut(s) 39, 513, 1199
PpsI GAGTC 3 cut(s) 39, 513, 1199
PscI ACATGT 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 1186, 1466
PspGI CCWGG 2 cut(s) 1186, 1466
PspN4I GGNNCC 2 cut(s) 24, 497
PspPI GGNCC 7 cut(s) 314, 340, 373, 446, 496, 685, 1266
PstNI CAGNNNCTG 1 cut(s) 645
PsuI RGATCY 1 cut(s) 966
RsaI GTAC 2 cut(s) 709, 839
RsaNI GTAC 2 cut(s) 708, 838
RseI CAYNNNNRTG 1 cut(s) 1296
SacI GAGCTC 1 cut(s) 387
SapI GCTCTTC 1 cut(s) 1553
SaqAI TTAA 7 cut(s) 483, 734, 884, 894, 1008, 1247, 1347
SatI GCNGC 2 cut(s) 599, 640
Sau96I GGNCC 7 cut(s) 314, 340, 373, 446, 496, 685, 1266
SchI GAGTC 3 cut(s) 39, 514, 1199
ScrFI CCNGG 3 cut(s) 317, 1188, 1468
SduI GDGCHC 2 cut(s) 387, 610
SfaNI GCATC 3 cut(s) 361, 548, 1133
SinI GGWCC 4 cut(s) 340, 373, 446, 496
SmiMI CAYNNNNRTG 1 cut(s) 1296
SseBI AGGCCT 1 cut(s) 1714
SsiI CCGC 7 cut(s) 64, 78, 338, 361, 474, 598, 648
SspMI CTAG 4 cut(s) 206, 492, 1688, 1710
SstI GAGCTC 1 cut(s) 387
StuI AGGCCT 1 cut(s) 1714
StyD4I CCNGG 3 cut(s) 315, 1186, 1466
StyI CCWWGG 2 cut(s) 124, 356
TaaI ACNGT 9 cut(s) 58, 309, 437, 464, 665, 712, 1139, 1316, 1509
TaiI ACGT 3 cut(s) 327, 709, 1021
TaqI TCGA 5 cut(s) 225, 256, 458, 503, 1354
TatI WGTACW 1 cut(s) 837
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 5 cut(s) 455, 726, 803, 1516, 1640
Tru1I TTAA 7 cut(s) 483, 734, 884, 894, 1008, 1247, 1347
Tru9I TTAA 7 cut(s) 483, 734, 884, 894, 1008, 1247, 1347
TscAI CASTG 3 cut(s) 813, 850, 1157
TseFI GTSAC 3 cut(s) 38, 1202, 1334
TseI GCWGC 1 cut(s) 639
Tsp45I GTSAC 3 cut(s) 38, 1202, 1334
TspDTI ATGAA 9 cut(s) 255, 291, 639, 711, 965, 1308, 1611, 1632, 1668
TspGWI ACGGA 1 cut(s) 1661
TspRI CASTG 3 cut(s) 813, 850, 1157
VpaK11BI GGWCC 4 cut(s) 340, 373, 446, 496
XapI RAATTY 5 cut(s) 129, 161, 227, 278, 1123
XceI RCATGY 3 cut(s) 614, 914, 1240
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XmiI GTMKAC 2 cut(s) 1476, 1607
XspI CTAG 4 cut(s) 206, 492, 1688, 1710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.