Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006313

Physical Location & Seq

Genomic Coordinates Forward (+)

56027158 .. 56027730

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG411500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAAGGGGCTCCTGTCTTGTTCTTCCATTGTATGTAACGAGAAATACGTTTTGTGCAGCTGCAATTACATCAATTTTAGGAAAAACATGCTATGCTTAAAATGTGATCATAAAAGGCCCAAGACTTCTGCTGAACCTATACATGAAGATGGAGGCTACCTTAACAGTAATAGTGTTAGTTTTGGTGACACTGATGTTAATGATCGATCCTACTCAGGACAAGGTAGAAATGGTCAAAACAGAGGTGCAGGCAGGTGGAGATTTGTGGTTGAAGAGAATGATGATGATAGCCTCTCAAACTCATTAGATAAGACTTCCAGGTTTGTAGACTTCCCAATTGCAGGAGGTAAGACTGAACTGTCTCAGAATCCACAAAAGAGGAACAGATGGAAGTTGAAGATGTTAGAGAAGAGCAAAGGAGGCACAATGGATATGGCAAGTGATGATGAACTTAGGTCTACCAGTAATGAAAGAAGAGTATTGGTTTCTGATTCTACGGATGATGAAGAGATGGCTGAGTGGTTTGGGGATAGAAAGCTAGAAACACAAAGGCTTCCATCTAGGCCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con zf-RanBP

Protein Analysis

190

Amino Acids

21.58

Weight (kDa)

6.74

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70650 AT1G70650
fragaria_vesca	FvH4_4g33730
malus_domestica	MD13G1029300.v1.1
prunus_persica	Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1 Prupe.1G332300_v2.0.a1
pyrus_communis	pycom13g01790 pycom16g01760
rosa_chinensis	RchiOBHm_Chr4g0443241
rosa_laevigata	RLG00000005943 RLG00000005947
rosa_multiflora	Rmu_co8168196.1_g000001 Rmu_sc0007238.1_g000005 Rmu_sc0007968.1_g000002 Rmu_sc0018919.1_g000002
rosa_roxburghii	Rroxscaffold_5G00383810
rosa_rugosa	Rorug04G0344700 Rorug04G0345000
rosa_samantha	Rh4AG399700 Rh4BG411400 Rh4BG411500 Rh4CG426800 Rh4DG406600
rosa_wichuraiana	Rw4G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	243
AasI	GACNNNNNNGTC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	243
AccI	GTMKAC	2 cut(s)	327, 458
AclWI	GGATC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	272, 397
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	2 cut(s)	60, 538
AluI	AGCT	2 cut(s)	60, 538
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	116, 563
ApeKI	GCWGC	2 cut(s)	57, 60
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	47, 69
BccI	CCATC	4 cut(s)	143, 381, 505, 565
BciT130I	CCWGG	1 cut(s)	319
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	2 cut(s)	539, 561
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	2 cut(s)	58, 61
BlsI	GCNGC	2 cut(s)	59, 62
Bme1390I	CCNGG	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	319
BseCI	ATCGAT	1 cut(s)	205
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	3 cut(s)	228, 377, 507
BseNI	ACTGG	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	47, 69
BsgI	GTGCAG	2 cut(s)	76, 267
BshFI	GGCC	2 cut(s)	118, 565
BshVI	ATCGAT	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	118, 565
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	106, 202, 206
BspANI	GGCC	2 cut(s)	118, 565
BspCNI	CTCAG	3 cut(s)	227, 376, 508
BspDI	ATCGAT	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	11
BspMI	ACCTGC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	462
BssMI	GATC	3 cut(s)	106, 202, 206
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	2 cut(s)	167, 360
Bst6I	CTCTTC	4 cut(s)	267, 404, 469, 501
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	4 cut(s)	214, 363, 452, 516
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	3 cut(s)	109, 205, 209
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	3 cut(s)	106, 202, 206
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	47, 69
Bsu15I	ATCGAT	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	118, 565
BsuTUI	ATCGAT	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	117
ClaI	ATCGAT	1 cut(s)	205
CviAII	CATG	2 cut(s)	88, 143
CviJI	RGCY	9 cut(s)	10, 60, 118, 156, 291, 515, 538, 553, 565
CviKI_1	RGCY	9 cut(s)	10, 60, 118, 156, 291, 515, 538, 553, 565
DdeI	CTNAG	4 cut(s)	214, 363, 452, 516
DpnI	GATC	3 cut(s)	108, 204, 208
DpnII	GATC	3 cut(s)	106, 202, 206
DrdI	GACNNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	358
Eam1104I	CTCTTC	4 cut(s)	267, 404, 469, 501
EarI	CTCTTC	4 cut(s)	267, 404, 469, 501
Eco147I	AGGCCT	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	2 cut(s)	91, 146
FaiI	YATR	7 cut(s)	34, 89, 94, 111, 140, 144, 434
FatI	CATG	2 cut(s)	87, 142
FbaI	TGATCA	1 cut(s)	106
FblI	GTMKAC	2 cut(s)	327, 458
Fnu4HI	GCNGC	2 cut(s)	58, 61
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	58, 61
FspBI	CTAG	2 cut(s)	539, 561
GluI	GCNGC	2 cut(s)	58, 61
HaeIII	GGCC	2 cut(s)	118, 565
Hin1II	CATG	2 cut(s)	91, 146
HinfI	GANTC	2 cut(s)	367, 491
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	328, 459
Hpy188I	TCNGA	2 cut(s)	366, 490
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	2 cut(s)	328, 459
HpyCH4III	ACNGT	2 cut(s)	167, 360
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	57, 63, 248, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	4 cut(s)	214, 363, 452, 516
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	91, 146
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	106, 202, 206
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	8 cut(s)	26, 201, 234, 238, 304, 327, 331, 475
Lsp1109I	GCAGC	2 cut(s)	47, 69
MaeI	CTAG	2 cut(s)	539, 561
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	35, 185
MalI	GATC	3 cut(s)	108, 204, 208
MboI	GATC	3 cut(s)	106, 202, 206
MboII	GAAGA	7 cut(s)	15, 158, 284, 409, 421, 486, 518
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	3 cut(s)	64, 73, 336
MnlI	CCTC	6 cut(s)	146, 236, 302, 338, 372, 413
MseI	TTAA	3 cut(s)	98, 162, 198
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	319
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	420
NdeII	GATC	3 cut(s)	106, 202, 206
NlaIII	CATG	2 cut(s)	91, 146
NlaIV	GGNNCC	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	91
PaqCI	CACCTGC	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	565
PciSI	GCTCTTC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	367, 491
PkrI	GCNGC	2 cut(s)	59, 62
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	98, 162, 198
SatI	GCNGC	2 cut(s)	58, 61
Sau3AI	GATC	3 cut(s)	106, 202, 206
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	64, 73, 336
SseBI	AGGCCT	1 cut(s)	565
SspMI	CTAG	2 cut(s)	539, 561
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	167, 360
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	205
TasI	AATT	3 cut(s)	64, 73, 336
TfiI	GAWTC	2 cut(s)	367, 491
Tru1I	TTAA	3 cut(s)	98, 162, 198
Tru9I	TTAA	3 cut(s)	98, 162, 198
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	57, 60
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	5 cut(s)	17, 159, 462, 483, 519
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	1 cut(s)	196
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	2 cut(s)	327, 458
XspI	CTAG	2 cut(s)	539, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.