Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Forward (+)

26970968 .. 26973464

Gene Structure 2497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71697.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGATCAAGACAAAGACTAGTCTAATTCCAAGTTGTTCATCACCTGAGGATCTAAAACGCGTTTTGCAAACGCTAGGTTCGAGCTGGGGAGATGTAGTTGAAGATCTGGAGCGTCTTGAGGTTGTTCCGTTAAAAGGAGCTATGACTAACGAGGTTTATCAGATTAATTGGCCTACTTTAAACGGTGAAGATGTTCATCGGAAAGTTCTTGTTCGGATCTACGGTGACGGCGTTGACCTTTTCTTTAACAGAGGTGATGAAATCAAAACGTTTGAGTGTATGTCTCATCATGGTTATGGTCCTAAGCTTCTTGGTCGTTTCTCTGATGGTCGTCTTGAAGAATTCATACACGCCAGAACTCTTTCTGCAGATGATCTTCGTGTAGCAGAAACATCTGATTTCATCGCTGCGAAGCTAAGAGAGTTTCATAAGCTTGATATGCCTGGTCCAAAGAACGTTCTTCTCTGGGAAAGACTTAGGACTTGGCTTAAGGAGGCTAAGAACTTGGCTTCACCTATAGAGATGGATAAGTATCGGTTGGAAGGTTTGGAAAATGAAATCAATTTGTTGGAAGAGAGACTTACTCGGGATGATCAAGAGATTGGTTTCTGTCACAACGATCTTCAGTATGGAAATGTCATGATTGATGAAGTAACCAATGCCATTACCATCATAGACTATGAGTATTCGAGTTTCAACCCAATTGCTTATGACATTGCAAACCACTTTTGTGAGATGGCTGCTAATTACCATTCAGACACTCCTCATGTTCTGGACTACACTCTATATCCAGGAGAAGGAGAAAGGAGAAGGTTCATTAGCACATATCTTGGCTCTACAGGGAATGCAACAAGTGATAAAGAAGTAGAGAGGTTATTGAAAGATGCAGAGAGCTACACTTTAGCAAACCATATCTTCTGGGGACTATGGGGAATCATCTCGGGACATGTGAACAAGATTGAGTTCGATTACATGGAATATGCAAGGCAGAGATTTGAACAGTACTGGCTTAGAAAGCCTTTGCTTCTTGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

346

Amino Acids

40.02

Weight (kDa)

5.09

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kin_N	PF04428	7 - 38	3.1e-07	Choline kinase N terminus
Choline_kinase	PF01633	43 - 337	5.2e-96	Choline/ethanolamine kinase
APH	PF01636	115 - 248	4.7e-12	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	63
AclI	AACGTT	2 cut(s)	272, 459
AclWI	GGATC	2 cut(s)	60, 227
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	611
AfaI	GTAC	1 cut(s)	1007
AfiI	CCNNNNNNNGG	2 cut(s)	137, 800
AflII	CTTAAG	1 cut(s)	491
AflIII	ACRYGT	2 cut(s)	61, 949
AgsI	TTSAA	6 cut(s)	104, 341, 700, 883, 1001, 1034
AhlI	ACTAGT	1 cut(s)	20
AjnI	CCWGG	2 cut(s)	445, 793
AleI	CACNNNNGTG	1 cut(s)	732
AluBI	AGCT	6 cut(s)	87, 143, 310, 418, 436, 897
AluI	AGCT	6 cut(s)	87, 143, 310, 418, 436, 897
Alw26I	GTCTC	2 cut(s)	291, 574
AlwI	GGATC	2 cut(s)	60, 227
Ama87I	CYCGRG	2 cut(s)	588, 943
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	410, 743
ApoI	RAATTY	1 cut(s)	344
AseI	ATTAAT	1 cut(s)	168
Asp700I	GAANNNNTTC	2 cut(s)	195, 364
AspS9I	GGNCC	2 cut(s)	302, 449
AsuHPI	GGTGA	5 cut(s)	36, 200, 239, 269, 507
AvaI	CYCGRG	2 cut(s)	588, 943
AvaII	GGWCC	2 cut(s)	302, 449
AxyI	CCTNAGG	1 cut(s)	48
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BbvI	GCAGC	2 cut(s)	397, 730
BccI	CCATC	4 cut(s)	323, 520, 680, 733
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	2 cut(s)	447, 795
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	2 cut(s)	291, 574
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	2 cut(s)	21, 77
BfmI	CTRYAG	3 cut(s)	369, 519, 840
BfrI	CTTAAG	1 cut(s)	491
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	2 cut(s)	411, 744
BlsI	GCNGC	2 cut(s)	412, 745
BmcAI	AGTACT	1 cut(s)	1007
Bme1390I	CCNGG	2 cut(s)	447, 795
Bme18I	GGWCC	2 cut(s)	302, 449
BmeT110I	CYCGRG	2 cut(s)	588, 943
BmgT120I	GGNCC	2 cut(s)	302, 449
BmrFI	CCNGG	2 cut(s)	447, 795
BmsI	GCATC	1 cut(s)	877
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
BpmI	CTGGAG	1 cut(s)	131
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	140
BsaBI	GATNNNNATC	2 cut(s)	198, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 800
Bse1I	ACTGG	1 cut(s)	1013
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	2 cut(s)	198, 534
BseBI	CCWGG	2 cut(s)	447, 795
BseGI	GGATG	1 cut(s)	598
BseJI	GATNNNNATC	2 cut(s)	198, 534
BseLI	CCNNNNNNNGG	2 cut(s)	137, 800
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	1013
BseRI	GAGGAG	1 cut(s)	756
BseXI	GCAGC	2 cut(s)	397, 730
BseYI	CCCAGC	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	175
BsiHKCI	CYCGRG	2 cut(s)	588, 943
BslFI	GGGAC	2 cut(s)	939, 960
BslI	CCNNNNNNNGG	2 cut(s)	137, 800
BsmAI	GTCTC	2 cut(s)	291, 574
BsmFI	GGGAC	2 cut(s)	939, 960
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	2 cut(s)	588, 943
Bsp143I	GATC	7 cut(s)	6, 52, 106, 219, 376, 595, 622
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	642
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	2 cut(s)	60, 227
BspTI	CTTAAG	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	717
BsrI	ACTGG	1 cut(s)	1013
BssMI	GATC	7 cut(s)	6, 52, 106, 219, 376, 595, 622
Bst2UI	CCWGG	2 cut(s)	447, 795
Bst4CI	ACNGT	3 cut(s)	188, 227, 1005
Bst6I	CTCTTC	1 cut(s)	570
BstAFI	CTTAAG	1 cut(s)	491
BstDEI	CTNAG	6 cut(s)	48, 306, 419, 479, 501, 1013
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	7 cut(s)	9, 55, 109, 222, 379, 598, 625
BstMAI	GTCTC	2 cut(s)	291, 574
BstMBI	GATC	7 cut(s)	6, 52, 106, 219, 376, 595, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 1018
BstNI	CCWGG	2 cut(s)	447, 795
BstNSI	RCATGY	1 cut(s)	953
BstSCI	CCNGG	2 cut(s)	445, 793
BstSFI	CTRYAG	3 cut(s)	369, 519, 840
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	397, 730
BstX2I	RGATCY	3 cut(s)	52, 106, 219
BstYI	RGATCY	3 cut(s)	52, 106, 219
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	598
CciI	TCATGA	1 cut(s)	642
Cfr13I	GGNCC	2 cut(s)	302, 449
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	1006
CviAII	CATG	5 cut(s)	293, 643, 770, 950, 976
CviQI	GTAC	1 cut(s)	1006
DdeI	CTNAG	6 cut(s)	48, 306, 419, 479, 501, 1013
DpnI	GATC	7 cut(s)	8, 54, 108, 221, 378, 597, 624
DpnII	GATC	7 cut(s)	6, 52, 106, 219, 376, 595, 622
DraI	TTTAAA	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	302, 449
Eco57I	CTGAAG	1 cut(s)	611
Eco81I	CCTNAGG	1 cut(s)	48
Eco88I	CYCGRG	2 cut(s)	588, 943
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	445, 793
FaeI	CATG	5 cut(s)	296, 646, 773, 953, 979
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	2 cut(s)	939, 960
FatI	CATG	5 cut(s)	292, 642, 769, 949, 975
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	411, 744
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	2 cut(s)	411, 744
FspBI	CTAG	2 cut(s)	21, 77
GluI	GCNGC	2 cut(s)	411, 744
GsaI	CCCAGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	175
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	5 cut(s)	296, 646, 773, 953, 979
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	2 cut(s)	308, 434
HinfI	GANTC	1 cut(s)	936
HphI	GGTGA	5 cut(s)	36, 200, 239, 269, 507
Hpy166II	GTNNAC	2 cut(s)	238, 955
Hpy188I	TCNGA	6 cut(s)	165, 204, 219, 328, 400, 760
Hpy8I	GTNNAC	2 cut(s)	238, 955
HpyAV	CCTTC	4 cut(s)	539, 794, 807, 1028
HpyCH4III	ACNGT	3 cut(s)	188, 227, 1005
HpyCH4IV	ACGT	2 cut(s)	272, 459
HpyCH4V	TGCA	6 cut(s)	70, 371, 722, 851, 890, 986
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 1018
HpyF3I	CTNAG	6 cut(s)	48, 306, 419, 479, 501, 1013
HpySE526I	ACGT	2 cut(s)	272, 459
Hsp92II	CATG	5 cut(s)	296, 646, 773, 953, 979
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	7 cut(s)	6, 52, 106, 219, 376, 595, 622
LmnI	GCTCC	2 cut(s)	112, 140
Lsp1109I	GCAGC	2 cut(s)	397, 730
LweI	GCATC	1 cut(s)	877
MaeI	CTAG	2 cut(s)	21, 77
MaeII	ACGT	2 cut(s)	272, 459
MaeIII	GTNAC	3 cut(s)	227, 614, 655
MalI	GATC	7 cut(s)	8, 54, 108, 221, 378, 597, 624
MboI	GATC	7 cut(s)	6, 52, 106, 219, 376, 595, 622
MboII	GAAGA	8 cut(s)	116, 203, 353, 371, 455, 587, 617, 910
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	3 cut(s)	52, 106, 219
MluCI	AATT	6 cut(s)	27, 169, 344, 565, 705, 748
MluI	ACGCGT	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	522, 552
MnlI	CCTC	7 cut(s)	43, 115, 148, 248, 490, 777, 867
MroXI	GAANNNNTTC	2 cut(s)	195, 364
MseI	TTAA	5 cut(s)	134, 168, 182, 249, 492
MslI	CAYNNNNRTG	2 cut(s)	297, 732
MspCI	CTTAAG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	447, 795
MunI	CAATTG	1 cut(s)	705
Mva1269I	GAATGC	1 cut(s)	853
MvaI	CCWGG	2 cut(s)	447, 795
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	442, 1018
NdeII	GATC	7 cut(s)	6, 52, 106, 219, 376, 595, 622
NlaIII	CATG	5 cut(s)	296, 646, 773, 953, 979
NmuCI	GTSAC	2 cut(s)	227, 614
NspI	RCATGY	1 cut(s)	953
OliI	CACNNNNGTG	1 cut(s)	732
PagI	TCATGA	1 cut(s)	642
PciI	ACATGT	1 cut(s)	949
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 231
PctI	GAATGC	1 cut(s)	853
PdmI	GAANNNNTTC	2 cut(s)	195, 364
PfeI	GAWTC	1 cut(s)	936
PfoI	TCCNGGA	1 cut(s)	793
PkrI	GCNGC	2 cut(s)	412, 745
PscI	ACATGT	1 cut(s)	949
PshBI	ATTAAT	1 cut(s)	168
Psp1406I	AACGTT	2 cut(s)	272, 459
Psp6I	CCWGG	2 cut(s)	445, 793
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	2 cut(s)	445, 793
PspPI	GGNCC	2 cut(s)	302, 449
PstI	CTGCAG	1 cut(s)	373
PsuI	RGATCY	3 cut(s)	52, 106, 219
RsaI	GTAC	1 cut(s)	1007
RsaNI	GTAC	1 cut(s)	1006
RseI	CAYNNNNRTG	2 cut(s)	297, 732
SaqAI	TTAA	5 cut(s)	134, 168, 182, 249, 492
SatI	GCNGC	2 cut(s)	411, 744
Sau3AI	GATC	7 cut(s)	6, 52, 106, 219, 376, 595, 622
Sau96I	GGNCC	2 cut(s)	302, 449
ScaI	AGTACT	1 cut(s)	1007
ScrFI	CCNGG	2 cut(s)	447, 795
SfaNI	GCATC	1 cut(s)	877
SfcI	CTRYAG	3 cut(s)	369, 519, 840
SinI	GGWCC	2 cut(s)	302, 449
SmiMI	CAYNNNNRTG	2 cut(s)	297, 732
SmlI	CTYRAG	2 cut(s)	119, 491
SmoI	CTYRAG	2 cut(s)	119, 491
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	6 cut(s)	27, 169, 344, 565, 705, 748
SspMI	CTAG	2 cut(s)	21, 77
StyD4I	CCNGG	2 cut(s)	445, 793
TaaI	ACNGT	3 cut(s)	188, 227, 1005
TaiI	ACGT	2 cut(s)	275, 462
TaqI	TCGA	3 cut(s)	83, 692, 969
TasI	AATT	6 cut(s)	27, 169, 344, 565, 705, 748
TatI	WGTACW	1 cut(s)	1005
TfiI	GAWTC	1 cut(s)	936
Tru1I	TTAA	5 cut(s)	134, 168, 182, 249, 492
Tru9I	TTAA	5 cut(s)	134, 168, 182, 249, 492
TseFI	GTSAC	2 cut(s)	227, 614
TseI	GCWGC	2 cut(s)	410, 743
Tsp45I	GTSAC	2 cut(s)	227, 614
TspDTI	ATGAA	9 cut(s)	30, 188, 276, 337, 394, 419, 573, 666, 808
TspGWI	ACGGA	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	2 cut(s)	302, 449
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	1 cut(s)	344
XceI	RCATGY	1 cut(s)	953
XmnI	GAANNNNTTC	2 cut(s)	195, 364
XspI	CTAG	2 cut(s)	21, 77
ZrmI	AGTACT	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.