Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Forward (+)

4333667 .. 4339946

Gene Structure 6280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G041800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCATAAAGAGAGTTGGGTTAATCAAAGGTTGTCTTCCAGAGGGATTAAAAAAGGTACTTGTATCTGTAGCTTCTGAATGGGGGGACGTAGTGGATGATTTGAATGCCTTGCAGGTCATACCATTGAAGGGTGCCATGACTAATGAGGTTTACCAAATAAGTTGGCCCACGAGGGATGGTGATTTTTCTCGAAATGTTCTGGTCCGGGTTTATGGCGAAGGAGTTGAAGTTTTCTTTAATAGGGATGATGAAATTCAGACCTTTGAGTGCATGTCCAAGCATGGCCAGGGACCGCGTCTTCTTGGGCGGTTCGCAGATGGACGGGTAGAGGAGTTCATTCATGCTAGAACACTATCAGCTGCTGACCTCCGTGATCCTGAAATATCTGCTATTATAGCAGCTAAGCTGAGAGAGTTCCACAATCTTGATATGCCTGGTCCAAAAAATGTAGTCCTTTGGGATAGAATGAGAAACTGGATTAGTGAGGCTAAAACTTTATGTTCAATAAAAGACACCAAGGAATTTGGCTTGGATACTTTAGAGGAGGAAATTAGTATGTTAGAGAAGGAACTATCACGGGACTATCAGGAGATTGGGTTCTGTCACAATGACCTGCAATACGGTAACATAATGATGGATGAAGAGACGAGATCAATCACTTTAATTGATTATGAATATGCCAGTTATAATCCTGTTGCTTACGACCTTGCAAATCATTTCTGTGAGATGGTAGCAAACTACCACTGTGAGACACCTCACATTTTGGACTACAGCAATTATCCAGGTCTGGAGGAGCGCCAGAGATTTGTCCGTATATATCTGAGCTCTGCAGGTTACCAACCCAGTGATGCTGATGTGGATGAGCTAGTTGACAAATCAGAGAAGTACACTTTGGCCAACCATCTCTTTTGGGGCTTATGGGGAATAATTTCGGGTTATGTGAACAAAATTGATTTTGACTACGTGGAGTATGCAAGGCAGAGGTTTCAGCAGTACTGGTTGAGAAAGCCGGCATTGTTGGGTTCTTCAGGTATTTACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

349

Amino Acids

40.09

Weight (kDa)

4.91

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	690
Acc36I	ACCTGC	3 cut(s)	106, 624, 824
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	1 cut(s)	298
AciI	CCGC	2 cut(s)	296, 310
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	3 cut(s)	3, 286, 897
AcsI	RAATTY	2 cut(s)	255, 524
AcuI	CTGAAG	1 cut(s)	1014
AfaI	GTAC	3 cut(s)	60, 890, 998
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	106, 130, 230, 507
AjnI	CCWGG	3 cut(s)	288, 436, 784
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AloI	GAACNNNNNNTCC	2 cut(s)	584, 616
AluBI	AGCT	6 cut(s)	74, 362, 404, 409, 828, 868
AluI	AGCT	6 cut(s)	74, 362, 404, 409, 828, 868
Alw21I	GWGCWC	1 cut(s)	830
Alw26I	GTCTC	2 cut(s)	641, 746
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	4 cut(s)	3, 167, 286, 897
ApeKI	GCWGC	2 cut(s)	362, 401
ApoI	RAATTY	2 cut(s)	255, 524
Asp700I	GAANNNNTTC	1 cut(s)	931
AspLEI	GCGC	1 cut(s)	801
AspS9I	GGNCC	4 cut(s)	168, 205, 293, 440
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	3 cut(s)	205, 293, 440
BalI	TGGCCA	3 cut(s)	5, 288, 899
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	830
BauI	CACGAG	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	29, 293
Bbv12I	GWGCWC	1 cut(s)	830
BbvI	GCAGC	2 cut(s)	349, 413
BccI	CCATC	5 cut(s)	173, 314, 631, 724, 912
BciT130I	CCWGG	3 cut(s)	290, 438, 786
BciVI	GTATCC	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	641, 746
BfaI	CTAG	2 cut(s)	348, 869
BfmI	CTRYAG	3 cut(s)	69, 772, 831
BfoI	RGCGCY	1 cut(s)	802
BfuAI	ACCTGC	3 cut(s)	106, 624, 824
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	2 cut(s)	363, 402
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	2 cut(s)	364, 403
BmcAI	AGTACT	1 cut(s)	998
Bme1390I	CCNGG	4 cut(s)	209, 290, 438, 786
Bme18I	GGWCC	3 cut(s)	205, 293, 440
BmgT120I	GGNCC	4 cut(s)	168, 205, 293, 440
BmiI	GGNNCC	2 cut(s)	136, 294
BmrFI	CCNGG	4 cut(s)	209, 290, 438, 786
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	1 cut(s)	841
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	29, 293
BpmI	CTGGAG	1 cut(s)	812
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	967
BsaJI	CCNNGG	2 cut(s)	289, 519
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 584, 614
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	1012
Bse1I	ACTGG	4 cut(s)	482, 684, 846, 1004
BseBI	CCWGG	3 cut(s)	290, 438, 786
BseDI	CCNNGG	2 cut(s)	289, 519
BseGI	GGATG	5 cut(s)	103, 184, 253, 646, 868
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	401, 815
BseNI	ACTGG	4 cut(s)	482, 684, 846, 1004
BseRI	GAGGAG	3 cut(s)	347, 560, 809
BseXI	GCAGC	2 cut(s)	349, 413
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	4 cut(s)	5, 169, 288, 899
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	830
BsiSI	CCGG	2 cut(s)	208, 1013
BslFI	GGGAC	3 cut(s)	101, 306, 596
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	641, 746
BsmBI	CGTCTC	1 cut(s)	641
BsmFI	GGGAC	3 cut(s)	101, 306, 596
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	5, 169, 288, 899
Bsp1286I	GDGCHC	1 cut(s)	830
Bsp143I	GATC	2 cut(s)	376, 653
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	2 cut(s)	296, 310
BspANI	GGCC	4 cut(s)	5, 169, 288, 899
BspCNI	CTCAG	2 cut(s)	402, 816
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	136, 294
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	3 cut(s)	106, 624, 824
BspPI	GGATC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	1012
BsrI	ACTGG	4 cut(s)	482, 684, 846, 1004
BssAI	RCCGGY	1 cut(s)	1012
BssECI	CCNNGG	2 cut(s)	289, 519
BssMI	GATC	2 cut(s)	376, 653
BssSI	CACGAG	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	172
Bst2UI	CCWGG	3 cut(s)	290, 438, 786
Bst4CI	ACNGT	2 cut(s)	626, 749
Bst6I	CTCTTC	1 cut(s)	639
BstBAI	YACGTR	1 cut(s)	967
BstC8I	GCNNGC	1 cut(s)	1014
BstDEI	CTNAG	3 cut(s)	405, 410, 824
BstEII	GGTNACC	1 cut(s)	836
BstF5I	GGATG	5 cut(s)	103, 184, 253, 646, 868
BstFNI	CGCG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	2 cut(s)	379, 656
BstMAI	GTCTC	2 cut(s)	641, 746
BstMBI	GATC	2 cut(s)	376, 653
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	3 cut(s)	290, 438, 786
BstNSI	RCATGY	1 cut(s)	277
BstPI	GGTNACC	1 cut(s)	836
BstSCI	CCNGG	4 cut(s)	207, 288, 436, 784
BstSFI	CTRYAG	3 cut(s)	69, 772, 831
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	349, 413
BstV2I	GAAGAC	2 cut(s)	29, 293
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	4 cut(s)	5, 169, 288, 899
BtsCI	GGATG	5 cut(s)	103, 184, 253, 646, 868
BtsIMutI	CAGTG	2 cut(s)	745, 853
BveI	ACCTGC	3 cut(s)	106, 624, 824
Cac8I	GCNNGC	1 cut(s)	1014
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	1 cut(s)	801
Cfr10I	RCCGGY	1 cut(s)	1012
Cfr13I	GGNCC	4 cut(s)	168, 205, 293, 440
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	59, 889, 997
CviAII	CATG	4 cut(s)	139, 274, 284, 344
CviQI	GTAC	3 cut(s)	59, 889, 997
DdeI	CTNAG	3 cut(s)	405, 410, 824
DpnI	GATC	2 cut(s)	378, 655
DpnII	GATC	2 cut(s)	376, 653
EaeI	YGGCCR	3 cut(s)	3, 286, 897
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	828
Eco130I	CCWWGG	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	830
Eco47I	GGWCC	3 cut(s)	205, 293, 440
Eco53kI	GAGCTC	1 cut(s)	828
Eco57I	CTGAAG	1 cut(s)	1014
Eco91I	GGTNACC	1 cut(s)	836
EcoICRI	GAGCTC	1 cut(s)	828
EcoO65I	GGTNACC	1 cut(s)	836
EcoRII	CCWGG	3 cut(s)	288, 436, 784
EcoT14I	CCWWGG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	830
ErhI	CCWWGG	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	641
FaeI	CATG	4 cut(s)	142, 277, 287, 347
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	3 cut(s)	101, 306, 596
FatI	CATG	4 cut(s)	138, 273, 283, 343
Fnu4HI	GCNGC	2 cut(s)	363, 402
FokI	GGATG	5 cut(s)	110, 191, 260, 653, 875
FriOI	GRGCYC	1 cut(s)	830
Fsp4HI	GCNGC	2 cut(s)	363, 402
FspBI	CTAG	2 cut(s)	348, 869
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	2 cut(s)	363, 402
GsuI	CTGGAG	1 cut(s)	812
HaeII	RGCGCY	1 cut(s)	802
HaeIII	GGCC	4 cut(s)	5, 169, 288, 899
HapII	CCGG	2 cut(s)	208, 1013
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	801
Hin1II	CATG	4 cut(s)	142, 277, 287, 347
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HpaII	CCGG	2 cut(s)	208, 1013
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	4 cut(s)	154, 874, 891, 946
Hpy188I	TCNGA	4 cut(s)	79, 261, 825, 883
Hpy188III	TCNNGA	6 cut(s)	41, 192, 380, 428, 590, 791
Hpy8I	GTNNAC	4 cut(s)	154, 874, 891, 946
HpyAV	CCTTC	3 cut(s)	124, 215, 562
HpyCH4III	ACNGT	2 cut(s)	626, 749
HpyCH4IV	ACGT	2 cut(s)	90, 966
HpyCH4V	TGCA	6 cut(s)	115, 273, 619, 713, 833, 977
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	3 cut(s)	405, 410, 824
HpySE526I	ACGT	2 cut(s)	90, 966
Hsp92II	CATG	4 cut(s)	142, 277, 287, 347
HspAI	GCGC	1 cut(s)	799
KroI	GCCGGC	1 cut(s)	1012
KroNI	GCCGGC	1 cut(s)	1014
Kzo9I	GATC	2 cut(s)	376, 653
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	2 cut(s)	349, 413
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	2 cut(s)	348, 869
MaeII	ACGT	2 cut(s)	90, 966
MaeIII	GTNAC	3 cut(s)	605, 626, 836
MalI	GATC	2 cut(s)	378, 655
MboI	GATC	2 cut(s)	376, 653
MboII	GAAGA	4 cut(s)	29, 293, 656, 1020
MhlI	GDGCHC	1 cut(s)	830
MlsI	TGGCCA	3 cut(s)	5, 288, 899
MluCI	AATT	7 cut(s)	255, 524, 552, 666, 778, 930, 951
MluNI	TGGCCA	3 cut(s)	5, 288, 899
Mox20I	TGGCCA	3 cut(s)	5, 288, 899
MroNI	GCCGGC	1 cut(s)	1012
MroXI	GAANNNNTTC	1 cut(s)	931
MscI	TGGCCA	3 cut(s)	5, 288, 899
MseI	TTAA	4 cut(s)	23, 50, 240, 665
MslI	CAYNNNNRTG	2 cut(s)	635, 723
Msp20I	TGGCCA	3 cut(s)	5, 288, 899
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	208, 1013
MspR9I	CCNGG	4 cut(s)	209, 290, 438, 786
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	3 cut(s)	290, 438, 786
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	398
NaeI	GCCGGC	1 cut(s)	1014
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	376, 653
NgoMIV	GCCGGC	1 cut(s)	1012
NlaIII	CATG	4 cut(s)	142, 277, 287, 347
NlaIV	GGNNCC	2 cut(s)	136, 294
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	277
PctI	GAATGC	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	1014
PdmI	GAANNNNTTC	1 cut(s)	931
PflFI	GACNNNGTC	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	364, 403
Ppu21I	YACGTR	1 cut(s)	967
PsiI	TTATAA	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	830
Psp6I	CCWGG	3 cut(s)	288, 436, 784
PspEI	GGTNACC	1 cut(s)	836
PspGI	CCWGG	3 cut(s)	288, 436, 784
PspN4I	GGNNCC	2 cut(s)	136, 294
PspPI	GGNCC	4 cut(s)	168, 205, 293, 440
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	365
PsyI	GACNNNGTC	1 cut(s)	297
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	3 cut(s)	60, 890, 998
RsaNI	GTAC	3 cut(s)	59, 889, 997
RseI	CAYNNNNRTG	2 cut(s)	635, 723
SacI	GAGCTC	1 cut(s)	830
SaqAI	TTAA	4 cut(s)	23, 50, 240, 665
SatI	GCNGC	2 cut(s)	363, 402
Sau3AI	GATC	2 cut(s)	376, 653
Sau96I	GGNCC	4 cut(s)	168, 205, 293, 440
ScaI	AGTACT	1 cut(s)	998
ScrFI	CCNGG	4 cut(s)	209, 290, 438, 786
SduI	GDGCHC	1 cut(s)	830
SfaNI	GCATC	1 cut(s)	841
SfcI	CTRYAG	3 cut(s)	69, 772, 831
SinI	GGWCC	3 cut(s)	205, 293, 440
SmiMI	CAYNNNNRTG	2 cut(s)	635, 723
Sse9I	AATT	7 cut(s)	255, 524, 552, 666, 778, 930, 951
SsiI	CCGC	2 cut(s)	296, 310
SspMI	CTAG	2 cut(s)	348, 869
SstI	GAGCTC	1 cut(s)	830
StyD4I	CCNGG	4 cut(s)	207, 288, 436, 784
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	2 cut(s)	626, 749
TaiI	ACGT	2 cut(s)	93, 969
TaqI	TCGA	1 cut(s)	193
TasI	AATT	7 cut(s)	255, 524, 552, 666, 778, 930, 951
TatI	WGTACW	2 cut(s)	888, 996
Tru1I	TTAA	4 cut(s)	23, 50, 240, 665
Tru9I	TTAA	4 cut(s)	23, 50, 240, 665
TscAI	CASTG	2 cut(s)	752, 853
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	2 cut(s)	362, 401
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	5 cut(s)	267, 328, 332, 657, 690
TspGWI	ACGGA	2 cut(s)	362, 803
TspRI	CASTG	2 cut(s)	752, 853
Tth111I	GACNNNGTC	1 cut(s)	297
VpaK11BI	GGWCC	3 cut(s)	205, 293, 440
XapI	RAATTY	2 cut(s)	255, 524
XceI	RCATGY	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	931
XspI	CTAG	2 cut(s)	348, 869
ZrmI	AGTACT	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.