Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00292

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Forward (+)

40683 .. 45679

Gene Structure 4997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCATAAAGGACATTGGTTTCATTGAAGGTTGTCTTCCTGAGGAATTAAAGAAGGTACTTCTTTCTCTAGCTTCTGAATGGGGGGATGTAGTGGATGACATGAATGCCTTGCAGGTCATCCCGTTGAAGGGGGCCATGACTAATGAGGTGTATCAATTAAATTGGCCGACTAGGAATGGTGATCAACTCCGGAAAGTTCTGATCCGGGTTTATGGCGAAGGGGTTGACCTGTTTTTTAATAGGGATGATGAAATTAGGACCTTTGAGTGCATGTCCAAGCACGGTCAGGGGCCGCGTCTTCTTGGACGGTTCCCAGATGGTCGTCTTGAGGAGTTCATTCACGCTAGGACACTATCAGCTGCTGACCTCCGTGATCCTGAAATATCTGCTATCATAGCAGCTAAGATGAGAGAGTTCCACAATCTGGATATGCCTGGTTCAAGAAATGCAGTACTTTGGAACAGAATGAGAAACTGGCTTAGTGAGGCTAAAACTTTGTGTTCAATAAAGGACAAAAAGGATTTTGGGTTGGATAATTTGGAGGAAGAAATTAATATGTTGGAGAAGAAACTGTCAGAGGACTATCAAGATATTGGGTTCTGTCACAATGACCTGCAGTATGGTAACATAATGATGGATGAAGAGACCAGATCAATCACTATAATCGATTATGAATATTCCAGTTACAATCCTGTTGCTTATGACCTTGCAAATCATTTCTGTGAAATGGTAGCAAACTACCACTCTGACGTACCTCACTTTTTGGACTATAAGAAATATCCAGGTCTGGAGGAGCGCCAGAGATTTGTGCGTCTATATCTGAGCTCTGCAGGGTACGATCCCAGTGATGCGGAGGTGGTGCAGTTAGTCAACAAAGTAGAGCAGTACACATTGGCAAACCATCTCTTTTGGGGATTATGGGGAATAATCTCGGGGTATGTTAACAAAATTGAATTTGACTACATGGAGTATGCGAGGCAGCGGTTTCAGCAATACTGGTTAAGAAAGCCAGCATTACTGGGTTCTTCAGGGGTTTCCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

348

Amino Acids

40.34

Weight (kDa)

5.06

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	41 - 334	2.6e-100	Choline/ethanolamine kinase
APH	PF01636	112 - 244	1.5e-12	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 624
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccII	CGCG	1 cut(s)	298
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	3 cut(s)	296, 854, 985
AclWI	GGATC	3 cut(s)	199, 371, 836
AcoI	YGGCCR	2 cut(s)	3, 167
AcsI	RAATTY	1 cut(s)	956
AcuI	CTGAAG	1 cut(s)	1014
AfaI	GTAC	5 cut(s)	60, 456, 756, 839, 890
AfiI	CCNNNNNNNGG	3 cut(s)	130, 131, 427
AgsI	TTSAA	5 cut(s)	29, 130, 444, 507, 956
AjnI	CCWGG	2 cut(s)	436, 784
AluBI	AGCT	4 cut(s)	74, 362, 404, 828
AluI	AGCT	4 cut(s)	74, 362, 404, 828
Alw21I	GWGCWC	1 cut(s)	830
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	3 cut(s)	199, 371, 836
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	934
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	4 cut(s)	3, 135, 167, 293
ApeKI	GCWGC	3 cut(s)	362, 401, 982
ApoI	RAATTY	1 cut(s)	956
AseI	ATTAAT	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	801
AspS9I	GGNCC	3 cut(s)	135, 261, 293
AsuC2I	CCSGG	2 cut(s)	209, 1042
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	934
AvaII	GGWCC	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	29, 293
Bbv12I	GWGCWC	1 cut(s)	830
BbvI	GCAGC	3 cut(s)	349, 413, 994
BccI	CCATC	3 cut(s)	314, 631, 912
BciT130I	CCWGG	2 cut(s)	438, 786
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	2 cut(s)	209, 1042
BcoDI	GTCTC	1 cut(s)	641
BfaI	CTAG	3 cut(s)	71, 174, 348
BfmI	CTRYAG	2 cut(s)	617, 831
BfoI	RGCGCY	1 cut(s)	802
BfuAI	ACCTGC	2 cut(s)	106, 624
BisI	GCNGC	4 cut(s)	296, 363, 402, 983
BlsI	GCNGC	4 cut(s)	297, 364, 403, 984
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	4 cut(s)	209, 438, 786, 1042
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	934
BmgT120I	GGNCC	3 cut(s)	135, 261, 293
BmiI	GGNNCC	3 cut(s)	136, 294, 314
BmrFI	CCNGG	4 cut(s)	209, 438, 786, 1042
BmrI	ACTGGG	2 cut(s)	840, 1031
BmsI	GCATC	1 cut(s)	841
BmuI	ACTGGG	2 cut(s)	840, 1031
BpiI	GAAGAC	2 cut(s)	29, 293
BpmI	CTGGAG	1 cut(s)	812
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	2 cut(s)	209, 1042
Bsa29I	ATCGAT	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	641
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 131, 427
Bse1I	ACTGG	5 cut(s)	482, 684, 846, 1004, 1026
Bse21I	CCTNAGG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	438, 786
BseCI	ATCGAT	1 cut(s)	669
BseGI	GGATG	5 cut(s)	94, 103, 120, 253, 646
BseLI	CCNNNNNNNGG	3 cut(s)	130, 131, 427
BseMII	CTCAG	2 cut(s)	33, 815
BseNI	ACTGG	5 cut(s)	482, 684, 846, 1004, 1026
BseRI	GAGGAG	2 cut(s)	347, 809
BseXI	GCAGC	3 cut(s)	349, 413, 994
BsgI	GTGCAG	1 cut(s)	884
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	4 cut(s)	5, 137, 169, 295
BshVI	ATCGAT	1 cut(s)	669
BsiHKAI	GWGCWC	1 cut(s)	830
BsiHKCI	CYCGRG	1 cut(s)	934
BsiSI	CCGG	3 cut(s)	193, 208, 1041
BslI	CCNNNNNNNGG	3 cut(s)	130, 131, 427
BsmAI	GTCTC	1 cut(s)	641
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	5, 137, 169, 295
Bso31I	GGTCTC	1 cut(s)	641
BsoBI	CYCGRG	1 cut(s)	934
Bsp1286I	GDGCHC	1 cut(s)	830
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	184, 204, 376, 653, 841
BspACI	CCGC	3 cut(s)	296, 854, 985
BspANI	GGCC	4 cut(s)	5, 137, 169, 295
BspCNI	CTCAG	2 cut(s)	34, 816
BspDI	ATCGAT	1 cut(s)	669
BspEI	TCCGGA	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	136, 294, 314
BspMAI	CTGCAG	2 cut(s)	621, 835
BspMI	ACCTGC	2 cut(s)	106, 624
BspPI	GGATC	3 cut(s)	199, 371, 836
BspTNI	GGTCTC	1 cut(s)	641
BsrI	ACTGG	5 cut(s)	482, 684, 846, 1004, 1026
BssMI	GATC	5 cut(s)	184, 204, 376, 653, 841
Bst2UI	CCWGG	2 cut(s)	438, 786
Bst4CI	ACNGT	3 cut(s)	287, 312, 576
Bst6I	CTCTTC	1 cut(s)	639
BstC8I	GCNNGC	1 cut(s)	1014
BstDEI	CTNAG	4 cut(s)	42, 405, 482, 824
BstF5I	GGATG	5 cut(s)	94, 103, 120, 253, 646
BstFNI	CGCG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	5 cut(s)	187, 207, 379, 656, 844
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	5 cut(s)	184, 204, 376, 653, 841
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 991
BstNI	CCWGG	2 cut(s)	438, 786
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	4 cut(s)	207, 436, 784, 1040
BstSFI	CTRYAG	2 cut(s)	617, 831
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	349, 413, 994
BstV2I	GAAGAC	2 cut(s)	29, 293
Bsu15I	ATCGAT	1 cut(s)	669
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	4 cut(s)	5, 137, 169, 295
BsuTUI	ATCGAT	1 cut(s)	669
BtsCI	GGATG	5 cut(s)	94, 103, 120, 253, 646
BtsIMutI	CAGTG	1 cut(s)	853
BveI	ACCTGC	2 cut(s)	106, 624
Cac8I	GCNNGC	1 cut(s)	1014
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	1 cut(s)	801
Cfr13I	GGNCC	3 cut(s)	135, 261, 293
ClaI	ATCGAT	1 cut(s)	669
CseI	GACGC	2 cut(s)	287, 803
Csp6I	GTAC	5 cut(s)	59, 455, 755, 838, 889
CviAII	CATG	4 cut(s)	103, 139, 274, 967
CviQI	GTAC	5 cut(s)	59, 455, 755, 838, 889
DdeI	CTNAG	4 cut(s)	42, 405, 482, 824
DpnI	GATC	5 cut(s)	186, 206, 378, 655, 843
DpnII	GATC	5 cut(s)	184, 204, 376, 653, 841
EaeI	YGGCCR	2 cut(s)	3, 167
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	828
Eco24I	GRGCYC	1 cut(s)	830
Eco31I	GGTCTC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	828
Eco57I	CTGAAG	1 cut(s)	1014
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	934
EcoICRI	GAGCTC	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	436, 784
EcoT38I	GRGCYC	1 cut(s)	830
FaeI	CATG	4 cut(s)	106, 142, 277, 970
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FatI	CATG	4 cut(s)	102, 138, 273, 966
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	296, 363, 402, 983
FokI	GGATG	5 cut(s)	101, 107, 110, 260, 653
FriOI	GRGCYC	1 cut(s)	830
Fsp4HI	GCNGC	4 cut(s)	296, 363, 402, 983
FspBI	CTAG	3 cut(s)	71, 174, 348
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	4 cut(s)	296, 363, 402, 983
GsuI	CTGGAG	1 cut(s)	812
HaeII	RGCGCY	1 cut(s)	802
HaeIII	GGCC	4 cut(s)	5, 137, 169, 295
HapII	CCGG	3 cut(s)	193, 208, 1041
HgaI	GACGC	2 cut(s)	287, 803
HhaI	GCGC	1 cut(s)	801
Hin1II	CATG	4 cut(s)	106, 142, 277, 970
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HincII	GTYRAC	3 cut(s)	229, 874, 946
HindII	GTYRAC	3 cut(s)	229, 874, 946
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	3 cut(s)	193, 208, 1041
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	4 cut(s)	229, 874, 891, 946
Hpy188I	TCNGA	5 cut(s)	79, 204, 580, 751, 825
Hpy188III	TCNNGA	8 cut(s)	41, 193, 329, 380, 428, 444, 590, 791
Hpy8I	GTNNAC	4 cut(s)	229, 874, 891, 946
HpyAV	CCTTC	4 cut(s)	23, 49, 124, 215
HpyCH4III	ACNGT	3 cut(s)	287, 312, 576
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	7 cut(s)	115, 273, 452, 619, 713, 833, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 991
HpyF3I	CTNAG	4 cut(s)	42, 405, 482, 824
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	4 cut(s)	106, 142, 277, 970
HspAI	GCGC	1 cut(s)	799
Kpn2I	TCCGGA	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	5 cut(s)	184, 204, 376, 653, 841
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	3 cut(s)	349, 413, 994
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	3 cut(s)	71, 174, 348
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	3 cut(s)	605, 626, 686
MalI	GATC	5 cut(s)	186, 206, 378, 655, 843
MboI	GATC	5 cut(s)	184, 204, 376, 653, 841
MboII	GAAGA	6 cut(s)	29, 293, 560, 580, 656, 1020
MhlI	GDGCHC	1 cut(s)	830
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	47, 158, 163, 255, 538, 552, 951, 956
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	513, 543
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	50, 161, 240, 555, 945, 1004
MslI	CAYNNNNRTG	2 cut(s)	635, 723
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	362, 985
MspI	CCGG	3 cut(s)	193, 208, 1041
MspR9I	CCNGG	4 cut(s)	209, 438, 786, 1042
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	438, 786
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	398, 991
NciI	CCSGG	2 cut(s)	209, 1042
NdeII	GATC	5 cut(s)	184, 204, 376, 653, 841
NlaIII	CATG	4 cut(s)	106, 142, 277, 970
NlaIV	GGNNCC	3 cut(s)	136, 294, 314
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	277
PctI	GAATGC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	4 cut(s)	297, 364, 403, 984
PpuMI	RGGWCCY	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	830
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	436, 784
PspGI	CCWGG	2 cut(s)	436, 784
PspN4I	GGNNCC	3 cut(s)	136, 294, 314
PspPI	GGNCC	3 cut(s)	135, 261, 293
PspPPI	RGGWCCY	1 cut(s)	261
PstI	CTGCAG	2 cut(s)	621, 835
PstNI	CAGNNNCTG	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	5 cut(s)	60, 456, 756, 839, 890
RsaNI	GTAC	5 cut(s)	59, 455, 755, 838, 889
RseI	CAYNNNNRTG	2 cut(s)	635, 723
SacI	GAGCTC	1 cut(s)	830
SaqAI	TTAA	6 cut(s)	50, 161, 240, 555, 945, 1004
SatI	GCNGC	4 cut(s)	296, 363, 402, 983
Sau3AI	GATC	5 cut(s)	184, 204, 376, 653, 841
Sau96I	GGNCC	3 cut(s)	135, 261, 293
ScaI	AGTACT	1 cut(s)	456
ScrFI	CCNGG	4 cut(s)	209, 438, 786, 1042
SduI	GDGCHC	1 cut(s)	830
SfaNI	GCATC	1 cut(s)	841
SfcI	CTRYAG	2 cut(s)	617, 831
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	635, 723
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	8 cut(s)	47, 158, 163, 255, 538, 552, 951, 956
SsiI	CCGC	3 cut(s)	296, 854, 985
SspI	AATATT	1 cut(s)	680
SspMI	CTAG	3 cut(s)	71, 174, 348
SstI	GAGCTC	1 cut(s)	830
StyD4I	CCNGG	4 cut(s)	207, 436, 784, 1040
TaaI	ACNGT	3 cut(s)	287, 312, 576
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	1 cut(s)	669
TasI	AATT	8 cut(s)	47, 158, 163, 255, 538, 552, 951, 956
TatI	WGTACW	2 cut(s)	454, 888
TauI	GCSGC	1 cut(s)	298
Tru1I	TTAA	6 cut(s)	50, 161, 240, 555, 945, 1004
Tru9I	TTAA	6 cut(s)	50, 161, 240, 555, 945, 1004
TscAI	CASTG	1 cut(s)	853
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	3 cut(s)	362, 401, 982
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	6 cut(s)	13, 119, 267, 328, 657, 690
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	1 cut(s)	853
Van91I	CCANNNNNTGG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	1 cut(s)	956
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	3 cut(s)	71, 174, 348
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.