Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Reverse (-)

37384218 .. 37389091

Gene Structure 4874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG198700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCCATAAAGGACATTGGTTTCATTGAAGGTTGTCTTCCTGAGGAATTAAAGAAGGTCATCCCGTTGAAGGGTGCCATGACTAATGAGGTGTATCAATTAAATTGGCCGACTAGGAATGGTGATCAACTCCGGAAAGTTCTGATCCGGGTTTATGGCGAAGGGGTTGACCTGTTTTTTAATAGGGATGATGAAATTAGGACCTTTGAGTGCATGTCCAAGCACGGTCAGGGGCCGCGTCTTCTTGGACGGTTCCCAGATGGTCGTCTTGAGGAGTTCATTCATGCTAGGACACTATCAGCTGCTGACCTCCGTGATCCTGAAATATCTGCTATCATAGCAGCTAAGATGAGAGAGTTCCACAATCTGGATATGCCTGGTTCAAGAAATGTAGTACTTTGGGACAGAATCAGAAACTGGCTTAGTGAGGCTAAAACTTTGTGTTCAATAAAGGACAAAAAGGATTTTGGGTTGGATACTTTGGAGGAAGAAATTAATATGTTGGAGAAGAAACTGTCAGAGGACTATCAAGATATTGGGTTCTGTCACAACGACCTGCAGTATGGTAACATAATGATGGATGAAGAGACCAGATCAATCACTATAATCGTGAGTTTCTTATTCCATTCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

211

Amino Acids

24.42

Weight (kDa)

5.23

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	21 - 203	3.4e-54	Choline/ethanolamine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccII	CGCG	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	132
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	2 cut(s)	139, 311
AcoI	YGGCCR	2 cut(s)	3, 107
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	3 cut(s)	70, 71, 367
AgsI	TTSAA	4 cut(s)	29, 70, 384, 447
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	2 cut(s)	302, 344
AluI	AGCT	2 cut(s)	302, 344
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	2 cut(s)	139, 311
AlwNI	CAGNNNCTG	2 cut(s)	305, 417
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	3 cut(s)	3, 107, 233
ApeKI	GCWGC	2 cut(s)	302, 341
AseI	ATTAAT	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	201, 233
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	201
AxyI	CCTNAGG	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	74
BbsI	GAAGAC	2 cut(s)	29, 233
BbvI	GCAGC	2 cut(s)	289, 353
BccI	CCATC	2 cut(s)	254, 571
BciT130I	CCWGG	1 cut(s)	378
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	2 cut(s)	114, 288
BfmI	CTRYAG	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	564
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	3 cut(s)	236, 303, 342
BlsI	GCNGC	3 cut(s)	237, 304, 343
BmcAI	AGTACT	1 cut(s)	396
Bme1390I	CCNGG	2 cut(s)	149, 378
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	201, 233
BmiI	GGNNCC	3 cut(s)	76, 234, 254
BmrFI	CCNGG	2 cut(s)	149, 378
BpiI	GAAGAC	2 cut(s)	29, 233
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	581
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 71, 367
Bse1I	ACTGG	1 cut(s)	422
Bse21I	CCTNAGG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	378
BseGI	GGATG	3 cut(s)	60, 193, 586
BseLI	CCNNNNNNNGG	3 cut(s)	70, 71, 367
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	289, 353
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	3 cut(s)	5, 109, 235
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	133, 148
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	3 cut(s)	70, 71, 367
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	5, 109, 235
Bso31I	GGTCTC	1 cut(s)	581
Bsp13I	TCCGGA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	124, 144, 316, 593
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	3 cut(s)	5, 109, 235
BspCNI	CTCAG	1 cut(s)	34
BspEI	TCCGGA	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	76, 234, 254
BspMAI	CTGCAG	1 cut(s)	561
BspMI	ACCTGC	1 cut(s)	564
BspPI	GGATC	2 cut(s)	139, 311
BspT107I	GGYRCC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	422
BssMI	GATC	4 cut(s)	124, 144, 316, 593
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	3 cut(s)	227, 252, 516
Bst6I	CTCTTC	1 cut(s)	579
BstDEI	CTNAG	3 cut(s)	42, 345, 422
BstF5I	GGATG	3 cut(s)	60, 193, 586
BstFNI	CGCG	1 cut(s)	238
BstKTI	GATC	4 cut(s)	127, 147, 319, 596
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	4 cut(s)	124, 144, 316, 593
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	147, 376
BstSFI	CTRYAG	1 cut(s)	557
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	289, 353
BstV2I	GAAGAC	2 cut(s)	29, 233
Bsu36I	CCTNAGG	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	3 cut(s)	5, 109, 235
BtsCI	GGATG	3 cut(s)	60, 193, 586
BveI	ACCTGC	1 cut(s)	564
CaiI	CAGNNNCTG	2 cut(s)	305, 417
Cfr13I	GGNCC	2 cut(s)	201, 233
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	3 cut(s)	79, 214, 284
CviJI	RGCY	7 cut(s)	5, 109, 235, 302, 344, 421, 431
CviKI_1	RGCY	7 cut(s)	5, 109, 235, 302, 344, 421, 431
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	3 cut(s)	42, 345, 422
DpnI	GATC	4 cut(s)	126, 146, 318, 595
DpnII	GATC	4 cut(s)	124, 144, 316, 593
EaeI	YGGCCR	2 cut(s)	3, 107
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	376
FaeI	CATG	3 cut(s)	82, 217, 287
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	3 cut(s)	78, 213, 283
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	236, 303, 342
FokI	GGATG	3 cut(s)	47, 200, 593
Fsp4HI	GCNGC	3 cut(s)	236, 303, 342
FspBI	CTAG	2 cut(s)	114, 288
GluI	GCNGC	3 cut(s)	236, 303, 342
HaeIII	GGCC	3 cut(s)	5, 109, 235
HapII	CCGG	2 cut(s)	133, 148
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	82, 217, 287
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	408
HpaII	CCGG	2 cut(s)	133, 148
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	144, 413, 520
Hpy188III	TCNNGA	8 cut(s)	41, 133, 269, 320, 368, 384, 530, 610
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	4 cut(s)	23, 49, 64, 155
HpyCH4III	ACNGT	3 cut(s)	227, 252, 516
HpyCH4V	TGCA	2 cut(s)	213, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	3 cut(s)	42, 345, 422
Hsp92II	CATG	3 cut(s)	82, 217, 287
Kpn2I	TCCGGA	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	124, 144, 316, 593
Lsp1109I	GCAGC	2 cut(s)	289, 353
MaeI	CTAG	2 cut(s)	114, 288
MaeIII	GTNAC	2 cut(s)	545, 566
MalI	GATC	4 cut(s)	126, 146, 318, 595
MboI	GATC	4 cut(s)	124, 144, 316, 593
MboII	GAAGA	5 cut(s)	29, 233, 500, 520, 596
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	47, 98, 103, 195, 492
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	453, 483
MnlI	CCTC	7 cut(s)	37, 82, 265, 320, 421, 478, 514
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	50, 101, 180, 495, 634
MslI	CAYNNNNRTG	1 cut(s)	575
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	2 cut(s)	133, 148
MspR9I	CCNGG	2 cut(s)	149, 378
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	338
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	4 cut(s)	124, 144, 316, 593
NlaIII	CATG	3 cut(s)	82, 217, 287
NlaIV	GGNNCC	3 cut(s)	76, 234, 254
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	408
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	3 cut(s)	237, 304, 343
PpuMI	RGGWCCY	1 cut(s)	201
PshBI	ATTAAT	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	3 cut(s)	76, 234, 254
PspPI	GGNCC	2 cut(s)	201, 233
PspPPI	RGGWCCY	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	561
PstNI	CAGNNNCTG	2 cut(s)	305, 417
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	575
SaqAI	TTAA	5 cut(s)	50, 101, 180, 495, 634
SatI	GCNGC	3 cut(s)	236, 303, 342
Sau3AI	GATC	4 cut(s)	124, 144, 316, 593
Sau96I	GGNCC	2 cut(s)	201, 233
ScaI	AGTACT	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	149, 378
SetI	ASST	9 cut(s)	34, 60, 93, 174, 206, 304, 312, 346, 558
SfcI	CTRYAG	1 cut(s)	557
SinI	GGWCC	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	5 cut(s)	47, 98, 103, 195, 492
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	2 cut(s)	114, 288
StyD4I	CCNGG	2 cut(s)	147, 376
TaaI	ACNGT	3 cut(s)	227, 252, 516
TasI	AATT	5 cut(s)	47, 98, 103, 195, 492
TatI	WGTACW	1 cut(s)	394
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	408
Tru1I	TTAA	5 cut(s)	50, 101, 180, 495, 634
Tru9I	TTAA	5 cut(s)	50, 101, 180, 495, 634
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	302, 341
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	5 cut(s)	13, 207, 268, 272, 597
TspGWI	ACGGA	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	201
VspI	ATTAAT	1 cut(s)	495
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	2 cut(s)	114, 288
ZrmI	AGTACT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.