Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000413.1

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Forward (+)

928 .. 4911

Gene Structure 3984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000413.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atggccataaaggacattggtttcattgaaggttgtcttcctgaggaattaaagaaggtcatcccgttgaagggggccatgactaatgaggtgtatcaattaaattggccgactaggaatggtgatcaactccggaaagttctgatccgggtttatggcgaaggggttgacctgttttttaatagggatgatgaaattaggacctttgagtgcatgtccaagcacggtcaggggccgcgtcttcttggacggttcccagatggtcgtcttgaggagttcattcatgctaggacactatcagctgctgacctccgtgatcctgaaatatctgctatcatagcagctaagatgagagagttccacaatctggatatgcctggttcaagaaatgtagtactttgggacagaatgagaaactggcttagtgaggctaaaactttgtgttcaataaaggacaaaaaggattttgggttggatactttggaggaagaaattaatatgttggagaagaaactgtcagaggactatcaagatattgggttctgtcacaacgacctgcagtatggtaacataatgatggatgaagagaccagatcaatcactataatcgattatgaatattccagttacaatcctgttgcttatgaccttgcaaatcatttctgtgaaatggtagcaaactaccactctgacgtacctcactttttggactataagaaatatccaggtctggaggagcgcacgagatttgtgcgtctatatctgagctctgcagggtacgatcccagtgatgctgaggtggtgcagttagtcaacaaagtagagcagtacacattggcaaaccatctcttttggggattatggggaataatctcggggtatgttaacaaaattgaatttgactacatggagtatgcgaggcagcggtttcagcaatactggttaagaaagccagcattattgggttcttcaggtgtttccgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

328

Amino Acids

38.17

Weight (kDa)

5.24

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	564
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccII	CGCG	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	132
AciI	CCGC	2 cut(s)	236, 925
AclWI	GGATC	3 cut(s)	139, 311, 776
AcoI	YGGCCR	2 cut(s)	3, 107
AcsI	RAATTY	1 cut(s)	896
AcuI	CTGAAG	1 cut(s)	954
AfaI	GTAC	4 cut(s)	396, 696, 779, 830
AfiI	CCNNNNNNNGG	3 cut(s)	70, 71, 367
AgsI	TTSAA	5 cut(s)	29, 70, 384, 447, 896
AjnI	CCWGG	2 cut(s)	376, 724
AluBI	AGCT	3 cut(s)	302, 344, 768
AluI	AGCT	3 cut(s)	302, 344, 768
Alw21I	GWGCWC	1 cut(s)	770
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	3 cut(s)	139, 311, 776
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	874
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	4 cut(s)	3, 75, 107, 233
ApeKI	GCWGC	3 cut(s)	302, 341, 922
ApoI	RAATTY	1 cut(s)	896
AseI	ATTAAT	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	3 cut(s)	75, 201, 233
AsuC2I	CCSGG	2 cut(s)	149, 982
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	874
AvaII	GGWCC	1 cut(s)	201
AxyI	CCTNAGG	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	770
BauI	CACGAG	1 cut(s)	742
BbsI	GAAGAC	2 cut(s)	29, 233
Bbv12I	GWGCWC	1 cut(s)	770
BbvCI	CCTCAGC	1 cut(s)	795
BbvI	GCAGC	3 cut(s)	289, 353, 934
BccI	CCATC	3 cut(s)	254, 571, 852
BcgI	CGANNNNNNTGC	2 cut(s)	733, 767
BciT130I	CCWGG	2 cut(s)	378, 726
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	2 cut(s)	149, 982
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	2 cut(s)	114, 288
BfmI	CTRYAG	2 cut(s)	557, 771
BfuAI	ACCTGC	1 cut(s)	564
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	4 cut(s)	236, 303, 342, 923
BlsI	GCNGC	4 cut(s)	237, 304, 343, 924
BmcAI	AGTACT	1 cut(s)	396
Bme1390I	CCNGG	4 cut(s)	149, 378, 726, 982
Bme18I	GGWCC	1 cut(s)	201
BmeT110I	CYCGRG	1 cut(s)	874
BmgT120I	GGNCC	3 cut(s)	75, 201, 233
BmiI	GGNNCC	3 cut(s)	76, 234, 254
BmrFI	CCNGG	4 cut(s)	149, 378, 726, 982
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	1 cut(s)	781
BmuI	ACTGGG	1 cut(s)	780
BpiI	GAAGAC	2 cut(s)	29, 233
BpmI	CTGGAG	1 cut(s)	752
Bpu10I	CCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	2 cut(s)	149, 982
Bsa29I	ATCGAT	1 cut(s)	609
BsaI	GGTCTC	1 cut(s)	581
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 71, 367
Bse1I	ACTGG	4 cut(s)	422, 624, 786, 944
Bse21I	CCTNAGG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	378, 726
BseCI	ATCGAT	1 cut(s)	609
BseGI	GGATG	3 cut(s)	60, 193, 586
BseLI	CCNNNNNNNGG	3 cut(s)	70, 71, 367
BseMII	CTCAG	3 cut(s)	33, 755, 786
BseNI	ACTGG	4 cut(s)	422, 624, 786, 944
BseRI	GAGGAG	2 cut(s)	287, 749
BseXI	GCAGC	3 cut(s)	289, 353, 934
BsgI	GTGCAG	1 cut(s)	824
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	4 cut(s)	5, 77, 109, 235
BshVI	ATCGAT	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	770
BsiHKCI	CYCGRG	1 cut(s)	874
BsiSI	CCGG	3 cut(s)	133, 148, 981
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	3 cut(s)	70, 71, 367
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	5, 77, 109, 235
Bso31I	GGTCTC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	874
Bsp1286I	GDGCHC	1 cut(s)	770
Bsp13I	TCCGGA	1 cut(s)	132
Bsp143I	GATC	5 cut(s)	124, 144, 316, 593, 781
BspACI	CCGC	2 cut(s)	236, 925
BspANI	GGCC	4 cut(s)	5, 77, 109, 235
BspCNI	CTCAG	3 cut(s)	34, 756, 787
BspDI	ATCGAT	1 cut(s)	609
BspEI	TCCGGA	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	76, 234, 254
BspMAI	CTGCAG	2 cut(s)	561, 775
BspMI	ACCTGC	1 cut(s)	564
BspPI	GGATC	3 cut(s)	139, 311, 776
BspTNI	GGTCTC	1 cut(s)	581
BsrI	ACTGG	4 cut(s)	422, 624, 786, 944
BssMI	GATC	5 cut(s)	124, 144, 316, 593, 781
BssSI	CACGAG	1 cut(s)	742
Bst2BI	CACGAG	1 cut(s)	742
Bst2UI	CCWGG	2 cut(s)	378, 726
Bst4CI	ACNGT	3 cut(s)	227, 252, 516
Bst6I	CTCTTC	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	954
BstDEI	CTNAG	5 cut(s)	42, 345, 422, 764, 795
BstF5I	GGATG	3 cut(s)	60, 193, 586
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	5 cut(s)	127, 147, 319, 596, 784
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	5 cut(s)	124, 144, 316, 593, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 931
BstNI	CCWGG	2 cut(s)	378, 726
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	4 cut(s)	147, 376, 724, 980
BstSFI	CTRYAG	2 cut(s)	557, 771
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	289, 353, 934
BstV2I	GAAGAC	2 cut(s)	29, 233
Bsu15I	ATCGAT	1 cut(s)	609
Bsu36I	CCTNAGG	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	4 cut(s)	5, 77, 109, 235
BsuTUI	ATCGAT	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	60, 193, 586
BtsIMutI	CAGTG	1 cut(s)	793
BveI	ACCTGC	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	954
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	3 cut(s)	75, 201, 233
ClaI	ATCGAT	1 cut(s)	609
CseI	GACGC	2 cut(s)	227, 743
Csp6I	GTAC	4 cut(s)	395, 695, 778, 829
CviAII	CATG	4 cut(s)	79, 214, 284, 907
CviQI	GTAC	4 cut(s)	395, 695, 778, 829
DdeI	CTNAG	5 cut(s)	42, 345, 422, 764, 795
DpnI	GATC	5 cut(s)	126, 146, 318, 595, 783
DpnII	GATC	5 cut(s)	124, 144, 316, 593, 781
EaeI	YGGCCR	2 cut(s)	3, 107
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	768
Eco24I	GRGCYC	1 cut(s)	770
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	768
Eco57I	CTGAAG	1 cut(s)	954
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	874
EcoICRI	GAGCTC	1 cut(s)	768
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	376, 724
EcoT38I	GRGCYC	1 cut(s)	770
FaeI	CATG	4 cut(s)	82, 217, 287, 910
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	4 cut(s)	78, 213, 283, 906
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	236, 303, 342, 923
FokI	GGATG	3 cut(s)	47, 200, 593
FriOI	GRGCYC	1 cut(s)	770
Fsp4HI	GCNGC	4 cut(s)	236, 303, 342, 923
FspBI	CTAG	2 cut(s)	114, 288
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	4 cut(s)	236, 303, 342, 923
GsuI	CTGGAG	1 cut(s)	752
HaeIII	GGCC	4 cut(s)	5, 77, 109, 235
HapII	CCGG	3 cut(s)	133, 148, 981
HgaI	GACGC	2 cut(s)	227, 743
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	4 cut(s)	82, 217, 287, 910
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HincII	GTYRAC	3 cut(s)	169, 814, 886
HindII	GTYRAC	3 cut(s)	169, 814, 886
HpaI	GTTAAC	1 cut(s)	886
HpaII	CCGG	3 cut(s)	133, 148, 981
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	4 cut(s)	169, 814, 831, 886
Hpy188I	TCNGA	4 cut(s)	144, 520, 691, 765
Hpy188III	TCNNGA	8 cut(s)	41, 133, 269, 320, 368, 384, 530, 731
Hpy8I	GTNNAC	4 cut(s)	169, 814, 831, 886
HpyAV	CCTTC	4 cut(s)	23, 49, 64, 155
HpyCH4III	ACNGT	3 cut(s)	227, 252, 516
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	5 cut(s)	213, 559, 653, 773, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 931
HpyF3I	CTNAG	5 cut(s)	42, 345, 422, 764, 795
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	4 cut(s)	82, 217, 287, 910
HspAI	GCGC	1 cut(s)	739
Kpn2I	TCCGGA	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	124
KspAI	GTTAAC	1 cut(s)	886
Kzo9I	GATC	5 cut(s)	124, 144, 316, 593, 781
LmnI	GCTCC	1 cut(s)	736
Lsp1109I	GCAGC	3 cut(s)	289, 353, 934
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	2 cut(s)	114, 288
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	3 cut(s)	545, 566, 626
MalI	GATC	5 cut(s)	126, 146, 318, 595, 783
MboI	GATC	5 cut(s)	124, 144, 316, 593, 781
MboII	GAAGA	6 cut(s)	29, 233, 500, 520, 596, 960
MhlI	GDGCHC	1 cut(s)	770
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	47, 98, 103, 195, 492, 891, 896
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	453, 483
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	50, 101, 180, 495, 885, 944
MslI	CAYNNNNRTG	2 cut(s)	575, 663
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	302, 925
MspI	CCGG	3 cut(s)	133, 148, 981
MspR9I	CCNGG	4 cut(s)	149, 378, 726, 982
MvaI	CCWGG	2 cut(s)	378, 726
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	2 cut(s)	338, 931
NciI	CCSGG	2 cut(s)	149, 982
NdeII	GATC	5 cut(s)	124, 144, 316, 593, 781
NlaIII	CATG	4 cut(s)	82, 217, 287, 910
NlaIV	GGNNCC	3 cut(s)	76, 234, 254
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	4 cut(s)	237, 304, 343, 924
PpuMI	RGGWCCY	1 cut(s)	201
PshBI	ATTAAT	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	376, 724
PspGI	CCWGG	2 cut(s)	376, 724
PspN4I	GGNNCC	3 cut(s)	76, 234, 254
PspPI	GGNCC	3 cut(s)	75, 201, 233
PspPPI	RGGWCCY	1 cut(s)	201
PstI	CTGCAG	2 cut(s)	561, 775
PstNI	CAGNNNCTG	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	4 cut(s)	396, 696, 779, 830
RsaNI	GTAC	4 cut(s)	395, 695, 778, 829
RseI	CAYNNNNRTG	2 cut(s)	575, 663
SacI	GAGCTC	1 cut(s)	770
SaqAI	TTAA	6 cut(s)	50, 101, 180, 495, 885, 944
SatI	GCNGC	4 cut(s)	236, 303, 342, 923
Sau3AI	GATC	5 cut(s)	124, 144, 316, 593, 781
Sau96I	GGNCC	3 cut(s)	75, 201, 233
ScaI	AGTACT	1 cut(s)	396
ScrFI	CCNGG	4 cut(s)	149, 378, 726, 982
SduI	GDGCHC	1 cut(s)	770
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	2 cut(s)	557, 771
SinI	GGWCC	1 cut(s)	201
SmiMI	CAYNNNNRTG	2 cut(s)	575, 663
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	7 cut(s)	47, 98, 103, 195, 492, 891, 896
SsiI	CCGC	2 cut(s)	236, 925
SspI	AATATT	1 cut(s)	620
SspMI	CTAG	2 cut(s)	114, 288
SstI	GAGCTC	1 cut(s)	770
StyD4I	CCNGG	4 cut(s)	147, 376, 724, 980
TaaI	ACNGT	3 cut(s)	227, 252, 516
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	1 cut(s)	609
TasI	AATT	7 cut(s)	47, 98, 103, 195, 492, 891, 896
TatI	WGTACW	2 cut(s)	394, 828
TauI	GCSGC	1 cut(s)	238
Tru1I	TTAA	6 cut(s)	50, 101, 180, 495, 885, 944
Tru9I	TTAA	6 cut(s)	50, 101, 180, 495, 885, 944
TscAI	CASTG	1 cut(s)	793
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	3 cut(s)	302, 341, 922
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	6 cut(s)	13, 207, 268, 272, 597, 630
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	793
Van91I	CCANNNNNTGG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	201
VspI	ATTAAT	1 cut(s)	495
XapI	RAATTY	1 cut(s)	896
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	2 cut(s)	114, 288
ZrmI	AGTACT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.