Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Reverse (-)

11380096 .. 11385331

Gene Structure 5236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12980.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCCATAAAGGCAATTGGTTTCATTGAAGGTTGTCTACCTGAGGAATTAAAGAAGGTCATCCCGTTGAAGGGGGCCATGACTAATGAGGTGTACCAATTAAACTGGCCGACTAAGAATGGTGATCAACTCCGGAAAGTTCTGGTCCGGGTTTATGGAGAAGGGGTTGACCTGTTTTTCAATAGGGATGATGAAATTAGGACCTTTGAGTGCATGTCCAAGCACGGTCAGGGGCCCCGTCTTCTTGGACGGTTCCCAGAGGGACGTGTTGAGGAGTTCATTCATGCTAGGACACTATCAGCTGCTGACCTCCGTGATCCTGAAACATCTGCTATTATAGCAGCTAAGCTGAGGGAGTTCCACAATCTGGAGATGCCTGGTTCAAGAAATGTAGTACTTTGGGACAGAATGAGAAACTGGCTTAGTGAGGCTAAAACTTTGTGTTCAGTAAAGGACAAAAAGGATTTTGGGTTGGATACTTTGGAGGAAGAAATTAACATGTTGGAGAAGAAACTGTCAGAGGACTGTCAAGACATTGGCTTCTGTCACAATGACTTGCAGTACGGTAACATAATGATGGATGAAGAAACCAGATCAATCACTATAATCGATTATGAATATGCCAGTTACAATCCTGTTGCTTATGACCTTGCGAATCATTTCTGTGAAATGGTAGCAAACTACCACTCTGAGGCACCTCACTTTTTGGACTACAGGAAATATCCAGGTCTGGATGAGCGCCAGAGATTTGTGCGTCTATATCTGAGCTCTGCAGAGTACGAACCCAGTGATGCTGAGGTGGCACAATTGGTCGACAAAGTAGAGCAGTACACATTGGCAAACCATCTCTTTTGGGGGTTATGGGGAATAATCTCGGGTTATGTGAACAAAATTGAATTTGACTACATGGAGTACGCGAGGCAGAGGTTTCAGCAATATTGGTTAAGAAAACCTGCATTATTGGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

324

Amino Acids

37.67

Weight (kDa)

5.2

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	1 - 288	5.1e-97	Choline/ethanolamine kinase
APH	PF01636	66 - 198	9.4e-13	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	961
AccB1I	GGYRCC	1 cut(s)	694
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccI	GTMKAC	2 cut(s)	37, 813
AccII	CGCG	1 cut(s)	917
AccIII	TCCGGA	1 cut(s)	132
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	2 cut(s)	3, 107
AcsI	RAATTY	1 cut(s)	896
AfaI	GTAC	6 cut(s)	95, 396, 563, 779, 830, 914
AfiI	CCNNNNNNNGG	4 cut(s)	70, 71, 367, 691
AflIII	ACRYGT	2 cut(s)	265, 498
AgsI	TTSAA	5 cut(s)	29, 70, 181, 384, 896
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	376, 724
AluBI	AGCT	4 cut(s)	302, 344, 349, 768
AluI	AGCT	4 cut(s)	302, 344, 349, 768
Alw21I	GWGCWC	1 cut(s)	770
AlwI	GGATC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	874
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	4 cut(s)	3, 75, 107, 233
ApaI	GGGCCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	302, 341
ApoI	RAATTY	1 cut(s)	896
Asp700I	GAANNNNTTC	1 cut(s)	659
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	5 cut(s)	75, 145, 201, 233, 234
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	874
AvaII	GGWCC	2 cut(s)	145, 201
AxyI	CCTNAGG	1 cut(s)	42
BaeGI	GKGCMC	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	694
BanII	GRGCYC	2 cut(s)	237, 770
BarI	GAAGNNNNNNTAC	2 cut(s)	21, 53
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	770
BbvCI	CCTCAGC	2 cut(s)	350, 795
BbvI	GCAGC	2 cut(s)	289, 353
BccI	CCATC	2 cut(s)	571, 852
BciT130I	CCWGG	2 cut(s)	378, 726
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	149
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	712, 771
BfoI	RGCGCY	1 cut(s)	742
BfuAI	ACCTGC	1 cut(s)	961
BfuI	GTATCC	1 cut(s)	469
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	303, 342
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	2 cut(s)	304, 343
BmcAI	AGTACT	1 cut(s)	396
Bme1390I	CCNGG	3 cut(s)	149, 378, 726
Bme18I	GGWCC	2 cut(s)	145, 201
BmeT110I	CYCGRG	1 cut(s)	874
BmgBI	CACGTC	1 cut(s)	266
BmgT120I	GGNCC	5 cut(s)	75, 145, 201, 233, 234
BmiI	GGNNCC	6 cut(s)	76, 234, 235, 236, 254, 696
BmrFI	CCNGG	3 cut(s)	149, 378, 726
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	2 cut(s)	363, 781
BmuI	ACTGGG	1 cut(s)	780
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	389
Bpu10I	CCTNAGC	2 cut(s)	350, 795
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	609
BsaWI	WCCGGW	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 71, 367, 691
Bse1I	ACTGG	4 cut(s)	110, 422, 624, 786
Bse21I	CCTNAGG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	378, 726
BseCI	ATCGAT	1 cut(s)	609
BseGI	GGATG	4 cut(s)	60, 193, 586, 739
BseLI	CCNNNNNNNGG	4 cut(s)	70, 71, 367, 691
BseMII	CTCAG	5 cut(s)	33, 341, 681, 755, 786
BseNI	ACTGG	4 cut(s)	110, 422, 624, 786
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	289, 353
Bsh1236I	CGCG	1 cut(s)	917
BshFI	GGCC	4 cut(s)	5, 77, 109, 235
BshNI	GGYRCC	1 cut(s)	694
BshVI	ATCGAT	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	770
BsiHKCI	CYCGRG	1 cut(s)	874
BsiSI	CCGG	2 cut(s)	133, 148
BslFI	GGGAC	2 cut(s)	276, 416
BslI	CCNNNNNNNGG	4 cut(s)	70, 71, 367, 691
BsmFI	GGGAC	2 cut(s)	276, 416
BsnI	GGCC	4 cut(s)	5, 77, 109, 235
BsoBI	CYCGRG	1 cut(s)	874
Bsp120I	GGGCCC	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	237, 770
Bsp13I	TCCGGA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	124, 316, 593
Bsp1720I	GCTNAGC	1 cut(s)	345
BspANI	GGCC	4 cut(s)	5, 77, 109, 235
BspCNI	CTCAG	5 cut(s)	34, 342, 682, 756, 787
BspDI	ATCGAT	1 cut(s)	609
BspEI	TCCGGA	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	917
BspLI	GGNNCC	6 cut(s)	76, 234, 235, 236, 254, 696
BspMAI	CTGCAG	1 cut(s)	775
BspMI	ACCTGC	1 cut(s)	961
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	694
BsrI	ACTGG	4 cut(s)	110, 422, 624, 786
BssMI	GATC	3 cut(s)	124, 316, 593
Bst2UI	CCWGG	2 cut(s)	378, 726
Bst4CI	ACNGT	5 cut(s)	227, 252, 516, 527, 566
BstDEI	CTNAG	8 cut(s)	42, 114, 345, 350, 422, 690, 764, 795
BstF5I	GGATG	4 cut(s)	60, 193, 586, 739
BstFNI	CGCG	1 cut(s)	917
BstH2I	RGCGCY	1 cut(s)	742
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	3 cut(s)	127, 319, 596
BstMBI	GATC	3 cut(s)	124, 316, 593
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 338, 800
BstNI	CCWGG	2 cut(s)	378, 726
BstNSI	RCATGY	2 cut(s)	217, 502
BstSCI	CCNGG	3 cut(s)	147, 376, 724
BstSFI	CTRYAG	2 cut(s)	712, 771
BstSLI	GKGCMC	1 cut(s)	237
BstUI	CGCG	1 cut(s)	917
BstV1I	GCAGC	2 cut(s)	289, 353
BstV2I	GAAGAC	1 cut(s)	233
Bsu15I	ATCGAT	1 cut(s)	609
Bsu36I	CCTNAGG	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	4 cut(s)	5, 77, 109, 235
BsuTUI	ATCGAT	1 cut(s)	609
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	4 cut(s)	60, 193, 586, 739
BtsIMutI	CAGTG	1 cut(s)	793
BveI	ACCTGC	1 cut(s)	961
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	5 cut(s)	75, 145, 201, 233, 234
ClaI	ATCGAT	1 cut(s)	609
CseI	GACGC	1 cut(s)	743
Csp6I	GTAC	6 cut(s)	94, 395, 562, 778, 829, 913
CviAII	CATG	5 cut(s)	79, 214, 284, 499, 907
CviQI	GTAC	6 cut(s)	94, 395, 562, 778, 829, 913
DdeI	CTNAG	8 cut(s)	42, 114, 345, 350, 422, 690, 764, 795
DpnI	GATC	3 cut(s)	126, 318, 595
DpnII	GATC	3 cut(s)	124, 316, 593
EaeI	YGGCCR	2 cut(s)	3, 107
Ecl136II	GAGCTC	1 cut(s)	768
Eco24I	GRGCYC	2 cut(s)	237, 770
Eco47I	GGWCC	2 cut(s)	145, 201
Eco53kI	GAGCTC	1 cut(s)	768
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	874
EcoICRI	GAGCTC	1 cut(s)	768
EcoO109I	RGGNCCY	3 cut(s)	201, 233, 234
EcoRII	CCWGG	2 cut(s)	376, 724
EcoT38I	GRGCYC	2 cut(s)	237, 770
FaeI	CATG	5 cut(s)	82, 217, 287, 502, 910
FaqI	GGGAC	2 cut(s)	276, 416
FatI	CATG	5 cut(s)	78, 213, 283, 498, 906
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	2 cut(s)	37, 813
Fnu4HI	GCNGC	2 cut(s)	303, 342
FokI	GGATG	4 cut(s)	47, 200, 593, 746
FriOI	GRGCYC	2 cut(s)	237, 770
Fsp4HI	GCNGC	2 cut(s)	303, 342
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	2 cut(s)	303, 342
GsuI	CTGGAG	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	742
HaeIII	GGCC	4 cut(s)	5, 77, 109, 235
HapII	CCGG	2 cut(s)	133, 148
HgaI	GACGC	1 cut(s)	743
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	5 cut(s)	82, 217, 287, 502, 910
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HincII	GTYRAC	2 cut(s)	169, 814
HindII	GTYRAC	2 cut(s)	169, 814
HinfI	GANTC	1 cut(s)	655
HpaII	CCGG	2 cut(s)	133, 148
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	6 cut(s)	38, 94, 169, 814, 831, 886
Hpy188I	TCNGA	3 cut(s)	520, 691, 765
Hpy188III	TCNNGA	7 cut(s)	133, 320, 368, 384, 530, 731, 969
Hpy8I	GTNNAC	6 cut(s)	38, 94, 169, 814, 831, 886
HpyAV	CCTTC	4 cut(s)	23, 49, 64, 155
HpyCH4III	ACNGT	5 cut(s)	227, 252, 516, 527, 566
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	4 cut(s)	213, 559, 773, 956
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 338, 800
HpyF3I	CTNAG	8 cut(s)	42, 114, 345, 350, 422, 690, 764, 795
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	5 cut(s)	82, 217, 287, 502, 910
HspAI	GCGC	1 cut(s)	739
Kpn2I	TCCGGA	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	124, 316, 593
Lsp1109I	GCAGC	2 cut(s)	289, 353
LweI	GCATC	2 cut(s)	363, 781
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	3 cut(s)	545, 566, 626
MalI	GATC	3 cut(s)	126, 318, 595
MboI	GATC	3 cut(s)	124, 316, 593
MboII	GAAGA	4 cut(s)	233, 500, 520, 596
MfeI	CAATTG	2 cut(s)	15, 806
MhlI	GDGCHC	2 cut(s)	237, 770
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	15, 47, 98, 195, 492, 806, 891, 896
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	453, 483
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	659
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	50, 101, 495, 944
MslI	CAYNNNNRTG	2 cut(s)	575, 663
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	2 cut(s)	133, 148
MspR9I	CCNGG	3 cut(s)	149, 378, 726
MunI	CAATTG	2 cut(s)	15, 806
MvaI	CCWGG	2 cut(s)	378, 726
MvnI	CGCG	1 cut(s)	917
MwoI	GCNNNNNNNGC	3 cut(s)	11, 338, 800
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	124, 316, 593
NlaIII	CATG	5 cut(s)	82, 217, 287, 502, 910
NlaIV	GGNNCC	6 cut(s)	76, 234, 235, 236, 254, 696
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	2 cut(s)	217, 502
PciI	ACATGT	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	655
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	304, 343
PpuMI	RGGWCCY	1 cut(s)	201
PscI	ACATGT	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	376, 724
PspGI	CCWGG	2 cut(s)	376, 724
PspN4I	GGNNCC	6 cut(s)	76, 234, 235, 236, 254, 696
PspOMI	GGGCCC	1 cut(s)	233
PspPI	GGNCC	5 cut(s)	75, 145, 201, 233, 234
PspPPI	RGGWCCY	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	6 cut(s)	95, 396, 563, 779, 830, 914
RsaNI	GTAC	6 cut(s)	94, 395, 562, 778, 829, 913
RseI	CAYNNNNRTG	2 cut(s)	575, 663
SacI	GAGCTC	1 cut(s)	770
SalI	GTCGAC	1 cut(s)	812
SaqAI	TTAA	4 cut(s)	50, 101, 495, 944
SatI	GCNGC	2 cut(s)	303, 342
Sau3AI	GATC	3 cut(s)	124, 316, 593
Sau96I	GGNCC	5 cut(s)	75, 145, 201, 233, 234
ScaI	AGTACT	1 cut(s)	396
ScrFI	CCNGG	3 cut(s)	149, 378, 726
SduI	GDGCHC	2 cut(s)	237, 770
SfaNI	GCATC	2 cut(s)	363, 781
SfcI	CTRYAG	2 cut(s)	712, 771
SinI	GGWCC	2 cut(s)	145, 201
SmiMI	CAYNNNNRTG	2 cut(s)	575, 663
Sse9I	AATT	8 cut(s)	15, 47, 98, 195, 492, 806, 891, 896
SspI	AATATT	1 cut(s)	938
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	770
StyD4I	CCNGG	3 cut(s)	147, 376, 724
TaaI	ACNGT	5 cut(s)	227, 252, 516, 527, 566
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	609, 813
TasI	AATT	8 cut(s)	15, 47, 98, 195, 492, 806, 891, 896
TatI	WGTACW	2 cut(s)	394, 828
TfiI	GAWTC	1 cut(s)	655
Tru1I	TTAA	4 cut(s)	50, 101, 495, 944
Tru9I	TTAA	4 cut(s)	50, 101, 495, 944
TscAI	CASTG	1 cut(s)	793
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	302, 341
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	6 cut(s)	13, 207, 268, 272, 597, 630
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	793
Van91I	CCANNNNNTGG	1 cut(s)	367
VpaK11BI	GGWCC	2 cut(s)	145, 201
XapI	RAATTY	1 cut(s)	896
XceI	RCATGY	2 cut(s)	217, 502
XmiI	GTMKAC	2 cut(s)	37, 813
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.