Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Forward (+)

2923184 .. 2926122

Gene Structure 2939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCCATAAAGACAATTGGTCTTATTAAAGGTCGTCTTCCGGAGGAGTTAAAGAAGGTACTTTTGTCTGTAGCTTCTGAATGGGGGGATGTAGTGGATGATATGAATGGCTTGCAGGTTATCCCATTGAAGGGGGCCATGACTAATGAGGTCTATCAAATAAGTTGGCCTATGAAAAACGGTGTTGACCTTTTCAGAAAAGTTCTGGTCCGGGTTTACGGCGAAGGAGTTGAAGTGTTTTTTAACCGGGAGGATGAAGTTCAGACGTTTGAGTGCATGTCCAAGCACGGCCAGGGGCCGCGCCTCCTTGGACGATTTGCAGAGGGACGGGTTGAGGAGTTCATTCATGCTAGAACGCTATCAGCTGCTGACCTCCGTGATCCCGAAATATCTGCAATTATAGCAGCTAAGCTGAGAGAGTTCCACAATTTGGATATGCCTGGTCCGAGAAATGTAGTCCTTTGGGATAGAATGAGGAACTGGCTCAATGAGGCGAAAAATTTGTGTTCGATAAAAGACATACAGAAATTTGGCTTGGACACTTTGGAAGAGGAAATTAGTATGTTAGAGAAGGAACTGTCACAGGACTATCAAGAAATTGGGTTCTGTCACAATGACCTGCAATACGGTAACATAATGATGGACGAAGAGACCAGATTAATCACTATAATTGATTATGAATATGCCAGTTACAATCCTGTCGCTTACGACCTTGCAAATCATTTCTGTGAAATGGTTGCGAACTACCACTCTGACACACCTCACGTTTTGGACTACAGGAACTATCCAGGTCTGGAGGAGCGCCAGAAATTTGTCCGTGCATATCTGAGCTCTGCAGATTACGAACCCAGTGATGCTGAGGTGGAGCAGCTAGTTGAAATAACAGAGAAGTACACTTTGGCTAACCATCTCTTTTGGGGCTTATGGGGAATAATTTCGGGTTATGTGAACAAAATTGATTTTGACTACGTTGAGTATGCAAGGCAGAGGTTTCAGCAGTATTGGTTGAGAAAGCCTGCGTTGTTGGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

345

Amino Acids

39.95

Weight (kDa)

4.94

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	41 - 335	7.7e-98	Choline/ethanolamine kinase
APH	PF01636	111 - 247	2e-14	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 627
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccII	CGCG	1 cut(s)	301
AccIII	TCCGGA	1 cut(s)	40
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	2 cut(s)	3, 289
AcsI	RAATTY	3 cut(s)	499, 527, 809
AfaI	GTAC	2 cut(s)	60, 893
AfiI	CCNNNNNNNGG	3 cut(s)	130, 131, 430
AgsI	TTSAA	3 cut(s)	130, 233, 878
AhdI	GACNNNNNGTC	1 cut(s)	18
AjnI	CCWGG	3 cut(s)	291, 439, 787
AjuI	GAANNNNNNNTTGG	4 cut(s)	518, 550, 881, 913
AluBI	AGCT	6 cut(s)	74, 365, 407, 412, 831, 871
AluI	AGCT	6 cut(s)	74, 365, 407, 412, 831, 871
Alw21I	GWGCWC	1 cut(s)	833
Alw26I	GTCTC	1 cut(s)	644
AlwI	GGATC	1 cut(s)	374
AlwNI	CAGNNNCTG	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	40
AoxI	GGCC	5 cut(s)	3, 135, 167, 289, 296
ApeKI	GCWGC	3 cut(s)	365, 404, 868
ApoI	RAATTY	3 cut(s)	499, 527, 809
AseI	ATTAAT	1 cut(s)	659
Asp700I	GAANNNNTTC	1 cut(s)	934
AspLEI	GCGC	2 cut(s)	303, 804
AspS9I	GGNCC	4 cut(s)	135, 208, 296, 443
AsuC2I	CCSGG	2 cut(s)	212, 248
AvaII	GGWCC	2 cut(s)	208, 443
BaeI	ACNNNNGTAYC	2 cut(s)	50, 83
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	833
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	833
BbvCI	CCTCAGC	1 cut(s)	858
BbvI	GCAGC	3 cut(s)	352, 416, 880
BccI	CCATC	2 cut(s)	634, 915
BceAI	ACGGC	2 cut(s)	235, 304
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	3 cut(s)	293, 441, 789
BcnI	CCSGG	2 cut(s)	212, 248
BcoDI	GTCTC	1 cut(s)	644
BfaI	CTAG	2 cut(s)	351, 872
BfmI	CTRYAG	3 cut(s)	69, 775, 834
BfoI	RGCGCY	1 cut(s)	805
BfuAI	ACCTGC	2 cut(s)	106, 627
BisI	GCNGC	4 cut(s)	299, 366, 405, 869
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	4 cut(s)	300, 367, 406, 870
Bme1390I	CCNGG	5 cut(s)	212, 248, 293, 441, 789
Bme18I	GGWCC	2 cut(s)	208, 443
BmeRI	GACNNNNNGTC	1 cut(s)	18
BmgT120I	GGNCC	4 cut(s)	135, 208, 296, 443
BmiI	GGNNCC	2 cut(s)	136, 297
BmrFI	CCNGG	5 cut(s)	212, 248, 293, 441, 789
BmrI	ACTGGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	844
BmuI	ACTGGG	1 cut(s)	843
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	815
Bpu10I	CCTNAGC	1 cut(s)	858
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuMI	CCSGG	2 cut(s)	212, 248
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	292, 307
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 131, 430
Bse1I	ACTGG	3 cut(s)	485, 687, 849
BseAI	TCCGGA	1 cut(s)	40
BseBI	CCWGG	3 cut(s)	293, 441, 789
BseDI	CCNNGG	2 cut(s)	292, 307
BseGI	GGATG	3 cut(s)	94, 103, 259
BseLI	CCNNNNNNNGG	3 cut(s)	130, 131, 430
BseMII	CTCAG	3 cut(s)	404, 818, 849
BseNI	ACTGG	3 cut(s)	485, 687, 849
BseRI	GAGGAG	3 cut(s)	59, 350, 812
BseXI	GCAGC	3 cut(s)	352, 416, 880
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	5 cut(s)	5, 137, 169, 291, 298
BsiHKAI	GWGCWC	1 cut(s)	833
BsiSI	CCGG	3 cut(s)	41, 211, 247
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	3 cut(s)	130, 131, 430
BsmAI	GTCTC	1 cut(s)	644
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	5 cut(s)	5, 137, 169, 291, 298
Bso31I	GGTCTC	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	833
Bsp13I	TCCGGA	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	379
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	5 cut(s)	5, 137, 169, 291, 298
BspCNI	CTCAG	3 cut(s)	405, 819, 850
BspEI	TCCGGA	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	136, 297
BspMAI	CTGCAG	1 cut(s)	838
BspMI	ACCTGC	2 cut(s)	106, 627
BspPI	GGATC	1 cut(s)	374
BspTNI	GGTCTC	1 cut(s)	644
BsrI	ACTGG	3 cut(s)	485, 687, 849
BssECI	CCNNGG	2 cut(s)	292, 307
BssMI	GATC	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	3 cut(s)	293, 441, 789
Bst4CI	ACNGT	3 cut(s)	182, 579, 629
Bst6I	CTCTTC	2 cut(s)	543, 642
BstC8I	GCNNGC	2 cut(s)	113, 1017
BstDEI	CTNAG	4 cut(s)	408, 413, 827, 858
BstF5I	GGATG	3 cut(s)	94, 103, 259
BstFNI	CGCG	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	805
BstHHI	GCGC	2 cut(s)	303, 804
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	3 cut(s)	293, 441, 789
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	5 cut(s)	210, 246, 291, 439, 787
BstSFI	CTRYAG	3 cut(s)	69, 775, 834
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	352, 416, 880
BstV2I	GAAGAC	1 cut(s)	29
BsuRI	GGCC	5 cut(s)	5, 137, 169, 291, 298
BtsCI	GGATG	3 cut(s)	94, 103, 259
BtsIMutI	CAGTG	1 cut(s)	856
BveI	ACCTGC	2 cut(s)	106, 627
Cac8I	GCNNGC	2 cut(s)	113, 1017
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	2 cut(s)	303, 804
Cfr13I	GGNCC	4 cut(s)	135, 208, 296, 443
Csp6I	GTAC	2 cut(s)	59, 892
CviAII	CATG	3 cut(s)	139, 277, 347
CviQI	GTAC	2 cut(s)	59, 892
DdeI	CTNAG	4 cut(s)	408, 413, 827, 858
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DriI	GACNNNNNGTC	1 cut(s)	18
EaeI	YGGCCR	2 cut(s)	3, 289
Eam1104I	CTCTTC	2 cut(s)	543, 642
Eam1105I	GACNNNNNGTC	1 cut(s)	18
EarI	CTCTTC	2 cut(s)	543, 642
Ecl136II	GAGCTC	1 cut(s)	831
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	833
Eco31I	GGTCTC	1 cut(s)	644
Eco47I	GGWCC	2 cut(s)	208, 443
Eco53kI	GAGCTC	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	831
EcoRII	CCWGG	3 cut(s)	291, 439, 787
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	833
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	3 cut(s)	142, 280, 350
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	3 cut(s)	138, 276, 346
Fnu4HI	GCNGC	4 cut(s)	299, 366, 405, 869
FokI	GGATG	3 cut(s)	101, 110, 266
FriOI	GRGCYC	1 cut(s)	833
Fsp4HI	GCNGC	4 cut(s)	299, 366, 405, 869
FspBI	CTAG	2 cut(s)	351, 872
GlaI	GCGC	2 cut(s)	302, 803
GluI	GCNGC	4 cut(s)	299, 366, 405, 869
GsuI	CTGGAG	1 cut(s)	815
HaeII	RGCGCY	1 cut(s)	805
HaeIII	GGCC	5 cut(s)	5, 137, 169, 291, 298
HapII	CCGG	3 cut(s)	41, 211, 247
HhaI	GCGC	2 cut(s)	303, 804
Hin1II	CATG	3 cut(s)	142, 280, 350
Hin6I	GCGC	2 cut(s)	301, 802
HinP1I	GCGC	2 cut(s)	301, 802
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HpaII	CCGG	3 cut(s)	41, 211, 247
Hpy166II	GTNNAC	4 cut(s)	187, 217, 894, 949
Hpy188I	TCNGA	6 cut(s)	79, 197, 264, 447, 754, 828
Hpy188III	TCNNGA	5 cut(s)	41, 383, 593, 794, 1032
Hpy8I	GTNNAC	4 cut(s)	187, 217, 894, 949
HpyAV	CCTTC	4 cut(s)	49, 124, 218, 565
HpyCH4III	ACNGT	3 cut(s)	182, 579, 629
HpyCH4IV	ACGT	3 cut(s)	266, 765, 969
HpyCH4V	TGCA	9 cut(s)	115, 276, 320, 395, 622, 716, 821, 836, 980
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	4 cut(s)	408, 413, 827, 858
HpySE526I	ACGT	3 cut(s)	266, 765, 969
Hsp92II	CATG	3 cut(s)	142, 280, 350
HspAI	GCGC	2 cut(s)	301, 802
Kpn2I	TCCGGA	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	799, 865
Lsp1109I	GCAGC	3 cut(s)	352, 416, 880
LweI	GCATC	1 cut(s)	844
MaeI	CTAG	2 cut(s)	351, 872
MaeII	ACGT	3 cut(s)	266, 765, 969
MaeIII	GTNAC	4 cut(s)	579, 608, 629, 689
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	3 cut(s)	29, 560, 659
MfeI	CAATTG	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	833
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	40
MroXI	GAANNNNTTC	1 cut(s)	934
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	27, 50, 243, 659
MslI	CAYNNNNRTG	2 cut(s)	638, 726
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	3 cut(s)	41, 211, 247
MspR9I	CCNGG	5 cut(s)	212, 248, 293, 441, 789
MunI	CAATTG	1 cut(s)	15
MvaI	CCWGG	3 cut(s)	293, 441, 789
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	401
NciI	CCSGG	2 cut(s)	212, 248
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	3 cut(s)	142, 280, 350
NlaIV	GGNNCC	2 cut(s)	136, 297
NmuCI	GTSAC	2 cut(s)	579, 608
NspI	RCATGY	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	934
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	4 cut(s)	300, 367, 406, 870
PshBI	ATTAAT	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	833
Psp6I	CCWGG	3 cut(s)	291, 439, 787
PspGI	CCWGG	3 cut(s)	291, 439, 787
PspN4I	GGNNCC	2 cut(s)	136, 297
PspPI	GGNCC	4 cut(s)	135, 208, 296, 443
PstI	CTGCAG	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	2 cut(s)	60, 893
RsaNI	GTAC	2 cut(s)	59, 892
RseI	CAYNNNNRTG	2 cut(s)	638, 726
SacI	GAGCTC	1 cut(s)	833
SaqAI	TTAA	4 cut(s)	27, 50, 243, 659
SatI	GCNGC	4 cut(s)	299, 366, 405, 869
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	4 cut(s)	135, 208, 296, 443
ScrFI	CCNGG	5 cut(s)	212, 248, 293, 441, 789
SduI	GDGCHC	1 cut(s)	833
SfaNI	GCATC	1 cut(s)	844
SfcI	CTRYAG	3 cut(s)	69, 775, 834
SinI	GGWCC	2 cut(s)	208, 443
SmiMI	CAYNNNNRTG	2 cut(s)	638, 726
SsiI	CCGC	1 cut(s)	299
SspMI	CTAG	2 cut(s)	351, 872
SstI	GAGCTC	1 cut(s)	833
StyD4I	CCNGG	5 cut(s)	210, 246, 291, 439, 787
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	3 cut(s)	182, 579, 629
TaiI	ACGT	3 cut(s)	269, 768, 972
TaqI	TCGA	1 cut(s)	509
TatI	WGTACW	1 cut(s)	891
TauI	GCSGC	1 cut(s)	301
Tru1I	TTAA	4 cut(s)	27, 50, 243, 659
Tru9I	TTAA	4 cut(s)	27, 50, 243, 659
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	2 cut(s)	579, 608
TseI	GCWGC	3 cut(s)	365, 404, 868
Tsp45I	GTSAC	2 cut(s)	579, 608
TspDTI	ATGAA	6 cut(s)	119, 188, 270, 331, 335, 693
TspGWI	ACGGA	2 cut(s)	365, 806
TspRI	CASTG	1 cut(s)	856
Van91I	CCANNNNNTGG	1 cut(s)	430
VpaK11BI	GGWCC	2 cut(s)	208, 443
VspI	ATTAAT	1 cut(s)	659
XapI	RAATTY	3 cut(s)	499, 527, 809
XceI	RCATGY	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	934
XspI	CTAG	2 cut(s)	351, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.