Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Reverse (-)

34925894 .. 34929615

Gene Structure 3722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG194600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCCATAAAGGACATTGGTTTCATTGAAGGTTGTCTTCCAGAGGAATTAAAGAAGGTACTTCTTTCTCTAGCTTCTGAATGGGGGGATGTAGTGGATGACATGAATGCCTTGCAGGTCATCCCGTTGAAGGGGGCCATGACTAATGAGGTGTATCAATTAAATTGGCCGACTAGGAATGGTGATCAACTCCGGAAAGTTCTGATCCGGGTTTATGGCGAAGGGGTTGACCTGTTTTTTAATAGGGATGATGAAATTAGGACCTTTGAGTGCATGTCCAAGCACGGTCAGGGGCCGCGTCTTCTTGGACGGTTCCCAGATGGTCGTCTTGAGGAGTTCATTCATGCTAGGACACTATCAGCTGCTGACCTCCGTGATCCTGAAATATCTGCTATCATAGCAGCTAAGATGAGAGAGTTCCACAATCTGGATATGCCTGGTTCAAGAAATGTAGTACTTTGGGACAGAATGAGAAACTGGCTTAGTGAGGCTAAAACTTTGTGTTCAATAAAGGACAAAAAGGATTTTGGGTTGGATACTTTGGAGGAAGAAATTAATATGTTGGAGAAGAAACTGTCAGAGGACTATCAAGATATTGGGTTCTGTCACAACGACCTGCAGTATGGTAACATAATGATGGATGAAGAGACCAGATCAATCACTATAATCCATGAAAGAGTTTTTATTGGATATATAGGAATTAAGCAGAACTTTGGGCTTCTACATGATTGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

245

Amino Acids

28.18

Weight (kDa)

5.01

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	41 - 223	2.2e-54	Choline/ethanolamine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 624
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccII	CGCG	1 cut(s)	298
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	2 cut(s)	199, 371
AcoI	YGGCCR	2 cut(s)	3, 167
AfaI	GTAC	2 cut(s)	60, 456
AfiI	CCNNNNNNNGG	3 cut(s)	130, 131, 427
AgsI	TTSAA	4 cut(s)	29, 130, 444, 507
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	3 cut(s)	74, 362, 404
AluI	AGCT	3 cut(s)	74, 362, 404
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	2 cut(s)	199, 371
AlwNI	CAGNNNCTG	1 cut(s)	365
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	4 cut(s)	3, 135, 167, 293
ApeKI	GCWGC	2 cut(s)	362, 401
AseI	ATTAAT	1 cut(s)	555
AspS9I	GGNCC	3 cut(s)	135, 261, 293
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	261
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	29, 293
BbvI	GCAGC	2 cut(s)	349, 413
BccI	CCATC	2 cut(s)	314, 631
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	641
BfaI	CTAG	3 cut(s)	71, 174, 348
BfmI	CTRYAG	1 cut(s)	617
BfuAI	ACCTGC	2 cut(s)	106, 624
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	3 cut(s)	296, 363, 402
BlsI	GCNGC	3 cut(s)	297, 364, 403
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	2 cut(s)	209, 438
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	3 cut(s)	135, 261, 293
BmiI	GGNNCC	3 cut(s)	136, 294, 314
BmrFI	CCNGG	2 cut(s)	209, 438
BpiI	GAAGAC	2 cut(s)	29, 293
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	641
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 131, 427
Bse1I	ACTGG	1 cut(s)	482
BseAI	TCCGGA	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	438
BseGI	GGATG	5 cut(s)	94, 103, 120, 253, 646
BseLI	CCNNNNNNNGG	3 cut(s)	130, 131, 427
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	349, 413
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	4 cut(s)	5, 137, 169, 295
BsiSI	CCGG	2 cut(s)	193, 208
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	3 cut(s)	130, 131, 427
BsmAI	GTCTC	1 cut(s)	641
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	5, 137, 169, 295
Bso31I	GGTCTC	1 cut(s)	641
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	4 cut(s)	184, 204, 376, 653
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	4 cut(s)	5, 137, 169, 295
BspEI	TCCGGA	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	136, 294, 314
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	2 cut(s)	106, 624
BspPI	GGATC	2 cut(s)	199, 371
BspTNI	GGTCTC	1 cut(s)	641
BsrI	ACTGG	1 cut(s)	482
BssMI	GATC	4 cut(s)	184, 204, 376, 653
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	3 cut(s)	287, 312, 576
Bst6I	CTCTTC	1 cut(s)	639
BstDEI	CTNAG	2 cut(s)	405, 482
BstF5I	GGATG	5 cut(s)	94, 103, 120, 253, 646
BstFNI	CGCG	1 cut(s)	298
BstKTI	GATC	4 cut(s)	187, 207, 379, 656
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	4 cut(s)	184, 204, 376, 653
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	207, 436
BstSFI	CTRYAG	1 cut(s)	617
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	349, 413
BstV2I	GAAGAC	2 cut(s)	29, 293
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	4 cut(s)	5, 137, 169, 295
BtsCI	GGATG	5 cut(s)	94, 103, 120, 253, 646
BveI	ACCTGC	2 cut(s)	106, 624
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	135, 261, 293
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	59, 455
CviAII	CATG	6 cut(s)	103, 139, 274, 344, 671, 725
CviQI	GTAC	2 cut(s)	59, 455
DdeI	CTNAG	2 cut(s)	405, 482
DpnI	GATC	4 cut(s)	186, 206, 378, 655
DpnII	GATC	4 cut(s)	184, 204, 376, 653
EaeI	YGGCCR	2 cut(s)	3, 167
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	436
FaeI	CATG	6 cut(s)	106, 142, 277, 347, 674, 728
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 695, 727
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	6 cut(s)	102, 138, 273, 343, 670, 724
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	296, 363, 402
FokI	GGATG	5 cut(s)	101, 107, 110, 260, 653
Fsp4HI	GCNGC	3 cut(s)	296, 363, 402
FspBI	CTAG	3 cut(s)	71, 174, 348
GluI	GCNGC	3 cut(s)	296, 363, 402
HaeIII	GGCC	4 cut(s)	5, 137, 169, 295
HapII	CCGG	2 cut(s)	193, 208
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	6 cut(s)	106, 142, 277, 347, 674, 728
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaII	CCGG	2 cut(s)	193, 208
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	79, 204, 580
Hpy188III	TCNNGA	7 cut(s)	41, 193, 329, 380, 428, 444, 590
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	4 cut(s)	23, 49, 124, 215
HpyCH4III	ACNGT	3 cut(s)	287, 312, 576
HpyCH4V	TGCA	3 cut(s)	115, 273, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	405, 482
Hsp92II	CATG	6 cut(s)	106, 142, 277, 347, 674, 728
Kpn2I	TCCGGA	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 204, 376, 653
Lsp1109I	GCAGC	2 cut(s)	349, 413
MaeI	CTAG	3 cut(s)	71, 174, 348
MaeIII	GTNAC	2 cut(s)	605, 626
MalI	GATC	4 cut(s)	186, 206, 378, 655
MboI	GATC	4 cut(s)	184, 204, 376, 653
MboII	GAAGA	5 cut(s)	29, 293, 560, 580, 656
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	47, 158, 163, 255, 552, 699
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	513, 543
MnlI	CCTC	7 cut(s)	37, 142, 325, 380, 481, 538, 574
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	50, 161, 240, 555, 702
MslI	CAYNNNNRTG	2 cut(s)	635, 729
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	193, 208
MspR9I	CCNGG	2 cut(s)	209, 438
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	4 cut(s)	184, 204, 376, 653
NlaIII	CATG	6 cut(s)	106, 142, 277, 347, 674, 728
NlaIV	GGNNCC	3 cut(s)	136, 294, 314
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	277
PctI	GAATGC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	3 cut(s)	297, 364, 403
PpuMI	RGGWCCY	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	136, 294, 314
PspPI	GGNCC	3 cut(s)	135, 261, 293
PspPPI	RGGWCCY	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	60, 456
RsaNI	GTAC	2 cut(s)	59, 455
RseI	CAYNNNNRTG	2 cut(s)	635, 729
SaqAI	TTAA	5 cut(s)	50, 161, 240, 555, 702
SatI	GCNGC	3 cut(s)	296, 363, 402
Sau3AI	GATC	4 cut(s)	184, 204, 376, 653
Sau96I	GGNCC	3 cut(s)	135, 261, 293
ScaI	AGTACT	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	209, 438
SfcI	CTRYAG	1 cut(s)	617
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	635, 729
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	6 cut(s)	47, 158, 163, 255, 552, 699
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	3 cut(s)	71, 174, 348
StyD4I	CCNGG	2 cut(s)	207, 436
TaaI	ACNGT	3 cut(s)	287, 312, 576
TasI	AATT	6 cut(s)	47, 158, 163, 255, 552, 699
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	1 cut(s)	298
Tru1I	TTAA	5 cut(s)	50, 161, 240, 555, 702
Tru9I	TTAA	5 cut(s)	50, 161, 240, 555, 702
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	2 cut(s)	362, 401
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	7 cut(s)	13, 119, 267, 328, 332, 657, 687
TspGWI	ACGGA	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	555
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	3 cut(s)	71, 174, 348
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.