Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Forward (+)

10531727 .. 10534450

Gene Structure 2724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0078700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATAGATATCAAGGAGCCGGAGAATGAGGAGGGGGCAGAATATGTGGATTTGACGATGCGTCAACCTACATTAAAGTCAAACGTAGCTGAGGTTGATTGCAAGTTGGCAATAGGTTCTGTTGAACATATTGTTGCTTATGCCACTGTTATGGAGTGCGAGGATCCTTCCCAACTCGTTCATGGCACTCCACTAGGGGATGGTAATGTGCGTGTTTCCATCTATGCCGCGCTTGAGGAGAAAGCAAAAGTGCCATTTCCTGTGAAAGATGAAATTGAAACAGTGAAGCAGGCTATGGGGAGTTGGGTCGCATGGCCTAAACACCTAGTCATAAAATCTGCAGTCAATGATCATTGGGTGTTGACACTTGTTGATCCGGAGAAAGGAACTGCCTATTTTATGGACCCACTGAAAAGACGCTTACCCACAGGAGATTGGATGTCTATCGTGGATACTGCTATGCGTATGTATATTTCTGAAAAGAATAAGCAGAGTCGGAGTTCAGCCCATTGGAAAAATTTGGCTGGCATTCCTCCCCAACCTAACAACAAGGAGTGCGGGTACTTTATCATGCGATACATGAGAGATATCATTGAGGATAAAGACATGTCATTGTTTCCTTCCAAGTGGGAGAGGAGAGGCAGTAGCCAATACACCCAGGTAGATATTGATCAAGTGCGAAATGAGTGGGGGAAGTTTGTTGTCAACACATATGTGCACGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

242

Amino Acids

27.67

Weight (kDa)

5.46

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	32 - 111	2.3e-14	Domain of unknown function (DUF8039)
Peptidase_C48	PF02902	102 - 202	2.2e-11	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	2 cut(s)	228, 558
AclWI	GGATC	3 cut(s)	158, 171, 368
AcsI	RAATTY	1 cut(s)	517
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	2 cut(s)	125, 278
AhdI	GACNNNNNGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	657
AleI	CACNNNNGTG	1 cut(s)	713
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw21I	GWGCWC	1 cut(s)	720
Alw44I	GTGCAC	1 cut(s)	716
AlwI	GGATC	3 cut(s)	158, 171, 368
Aor13HI	TCCGGA	1 cut(s)	376
AoxI	GGCC	1 cut(s)	314
ApaLI	GTGCAC	1 cut(s)	716
ApoI	RAATTY	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	403
BaeGI	GKGCMC	1 cut(s)	720
BamHI	GGATCC	1 cut(s)	163
BauI	CACGAG	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	720
BbvCI	CCTCAGC	1 cut(s)	90
BccI	CCATC	2 cut(s)	194, 227
BciT130I	CCWGG	1 cut(s)	659
BciVI	GTATCC	1 cut(s)	445
BclI	TGATCA	2 cut(s)	349, 670
BfaI	CTAG	2 cut(s)	194, 326
BfmI	CTRYAG	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	659
Bme18I	GGWCC	1 cut(s)	403
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	3 cut(s)	18, 165, 405
BmrFI	CCNGG	1 cut(s)	659
BmsI	GCATC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	254
BsaBI	GATNNNNATC	3 cut(s)	8, 443, 669
BsaJI	CCNNGG	1 cut(s)	657
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	4 cut(s)	545, 575, 628, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse8I	GATNNNNATC	3 cut(s)	8, 443, 669
BseAI	TCCGGA	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	2 cut(s)	205, 444
BseJI	GATNNNNATC	3 cut(s)	8, 443, 669
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	81
BseRI	GAGGAG	3 cut(s)	44, 251, 649
BseSI	GKGCMC	1 cut(s)	720
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	20, 377
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	4 cut(s)	163, 349, 373, 670
BspACI	CCGC	2 cut(s)	228, 558
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	82
BspEI	TCCGGA	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	725
BspLI	GGNNCC	3 cut(s)	18, 165, 405
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	3 cut(s)	158, 171, 368
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	4 cut(s)	163, 349, 373, 670
BssSI	CACGAG	1 cut(s)	719
Bst2BI	CACGAG	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	2 cut(s)	148, 283
BstC8I	GCNNGC	2 cut(s)	291, 526
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	205, 444
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	4 cut(s)	166, 352, 376, 673
BstMBI	GATC	4 cut(s)	163, 349, 373, 670
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	657
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	720
BstUI	CGCG	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	205, 444
BtsIMutI	CAGTG	3 cut(s)	144, 288, 407
Cac8I	GCNNGC	2 cut(s)	291, 526
CciI	TCATGA	1 cut(s)	725
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	2 cut(s)	50, 426
Csp6I	GTAC	1 cut(s)	562
CviAII	CATG	6 cut(s)	182, 312, 571, 580, 607, 726
CviJI	RGCY	7 cut(s)	19, 89, 293, 316, 506, 524, 648
CviKI_1	RGCY	7 cut(s)	19, 89, 293, 316, 506, 524, 648
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	4 cut(s)	165, 351, 375, 672
DpnII	GATC	4 cut(s)	163, 349, 373, 670
DriI	GACNNNNNGTC	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	60
Eco32I	GATATC	2 cut(s)	10, 589
Eco47I	GGWCC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	657
EcoRV	GATATC	2 cut(s)	10, 589
FaeI	CATG	6 cut(s)	185, 315, 574, 583, 610, 729
FatI	CATG	6 cut(s)	181, 311, 570, 579, 606, 725
FauI	CCCGC	1 cut(s)	551
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	2 cut(s)	349, 670
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	212, 451
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	194, 326
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	316
HapII	CCGG	2 cut(s)	20, 377
HgaI	GACGC	2 cut(s)	50, 426
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	6 cut(s)	185, 315, 574, 583, 610, 729
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HincII	GTYRAC	3 cut(s)	65, 363, 706
HindII	GTYRAC	3 cut(s)	65, 363, 706
HinfI	GANTC	2 cut(s)	493, 722
HpaII	CCGG	2 cut(s)	20, 377
Hpy166II	GTNNAC	4 cut(s)	65, 363, 706, 718
Hpy188I	TCNGA	2 cut(s)	478, 498
Hpy188III	TCNNGA	2 cut(s)	377, 726
Hpy8I	GTNNAC	4 cut(s)	65, 363, 706, 718
HpyAV	CCTTC	2 cut(s)	177, 630
HpyCH4III	ACNGT	2 cut(s)	148, 283
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	102, 341, 718
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	6 cut(s)	185, 315, 574, 583, 610, 729
HspAI	GCGC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	376
Ksp22I	TGATCA	2 cut(s)	349, 670
Kzo9I	GATC	4 cut(s)	163, 349, 373, 670
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	8 cut(s)	33, 273, 275, 390, 414, 510, 644, 671
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	2 cut(s)	194, 326
MaeII	ACGT	1 cut(s)	84
MalI	GATC	4 cut(s)	165, 351, 375, 672
MboI	GATC	4 cut(s)	163, 349, 373, 670
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	720
MluCI	AATT	2 cut(s)	273, 517
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	9 cut(s)	22, 25, 85, 154, 229, 543, 589, 627, 632
MroI	TCCGGA	1 cut(s)	376
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	2 cut(s)	149, 713
MspI	CCGG	2 cut(s)	20, 377
MspR9I	CCNGG	1 cut(s)	659
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	659
MvnI	CGCG	1 cut(s)	230
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	4 cut(s)	163, 349, 373, 670
NlaIII	CATG	6 cut(s)	185, 315, 574, 583, 610, 729
NlaIV	GGNNCC	3 cut(s)	18, 165, 405
NspI	RCATGY	1 cut(s)	610
OliI	CACNNNNGTG	1 cut(s)	713
PagI	TCATGA	1 cut(s)	725
PciI	ACATGT	1 cut(s)	606
PctI	GAATGC	1 cut(s)	528
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PscI	ACATGT	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	3 cut(s)	18, 165, 405
PspPI	GGNCC	1 cut(s)	403
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
RseI	CAYNNNNRTG	2 cut(s)	149, 713
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	4 cut(s)	163, 349, 373, 670
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	659
SduI	GDGCHC	1 cut(s)	720
SetI	ASST	8 cut(s)	70, 87, 91, 96, 118, 327, 544, 663
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	2 cut(s)	149, 713
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	273, 517
SsiI	CCGC	2 cut(s)	228, 558
SspMI	CTAG	2 cut(s)	194, 326
StyD4I	CCNGG	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	148, 283
TaiI	ACGT	1 cut(s)	87
TasI	AATT	2 cut(s)	273, 517
TauI	GCSGC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	3 cut(s)	151, 288, 414
TspDTI	ATGAA	2 cut(s)	170, 285
TspRI	CASTG	3 cut(s)	151, 288, 414
VneI	GTGCAC	1 cut(s)	716
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XspI	CTAG	2 cut(s)	194, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.