Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Reverse (-)

6148758 .. 6151399

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09760.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGGTAGGAATCTTTGGATTGATCCCAAGCTCATCACCAGACGAGCTAAGGAAGATTCTTCAAGCGCTTTCGACGAAATGGGGAGACGTAGTTGAGGATTTTGAGAGTCTTGAAGTGAAGCCAATGAAAGGAGCGATGACTAACGAAGTGTTCATGGTTAGTTGGCCTAGAAAAGAAACGAATCTTCGATGTAGGAAGCTTCTTGTTCGTGTTTATGGTGAAGGTGTTGAGCTTTTCTTCAATAGAGACGATGAGATTCGTACTTTTGAGTATGTTGCTCGTCATGGTCACGGTCCTACACTTCTTGGTCGCTTCGCCGGCGGTAGAGTCGAAGAGTTTATCCATGCCCGGACACTATCGGCAACCGATCTTCGTGATCCGAACATATCAGCTCTTGTTGCATCTAAGCTAAGAAGATTTCACAGCATACACATTCCTGGAGATAGAATTATGCTCATCTGGGACAGGATGAGGACTTGGGTAGGACAAGCCAAGAATCTATGTTCAAATGAACATTCAACAGAGTTTGGTCTAGACGACATTGAAGATGAAATCAACCTGCTGGAACAAGAAGTGAACAATGAACAAGAGATTGGCTTCTGTCACAATGACTTGCAGTATGGTAACATCATGATTGATGAAGAAACCAATGCAATTACTATCATTGATTATGAGTATGCAAGTTATAATCCGATCGCTTACGACATAGCAAATCATTTCTGTGAAATGGCGGCAGATTATCATTCAAACACTCCTCATATCTTGGACTACACTCTATATCCAGGGGAAGAAGAAAGGAGGAGATTCATATGTAACTACTTAACCTCTTCAGGTGAAGAAGCAAGAGAAGAAGACATAGAACAACTTTTGGATGATATTGAGAAGTATACATTGGCAAGCCATCTCTTCTGGGGTTTATGGGGAATCATATCTGGTTATGTGAACAAGATTGAGTTTGATTATATCGAGTATTCGAGGCAGAGATTCAAACAGTATTGGCTTCGCAAGCCAAAGCTTTTATCTTTCTTCCCATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kinase

Protein Analysis

346

Amino Acids

40.35

Weight (kDa)

4.99

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	40 - 208	1.1e-43	Choline/ethanolamine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	690
Acc36I	ACCTGC	1 cut(s)	570
AccI	GTMKAC	1 cut(s)	890
AciI	CCGC	3 cut(s)	5, 324, 734
AclWI	GGATC	2 cut(s)	19, 374
AcuI	CTGAAG	1 cut(s)	816
AfaI	GTAC	1 cut(s)	265
AfeI	AGCGCT	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	8 cut(s)	65, 116, 244, 510, 522, 548, 750, 991
AjnI	CCWGG	2 cut(s)	439, 784
AjuI	GAANNNNNNNTTGG	4 cut(s)	579, 611, 878, 910
AluBI	AGCT	7 cut(s)	33, 49, 202, 235, 395, 412, 1018
AluI	AGCT	7 cut(s)	33, 49, 202, 235, 395, 412, 1018
Alw26I	GTCTC	2 cut(s)	81, 243
AlwI	GGATC	2 cut(s)	19, 374
Aor51HI	AGCGCT	1 cut(s)	69
AoxI	GGCC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	3 cut(s)	30, 233, 848
AvaII	GGWCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	861
BccI	CCATC	1 cut(s)	912
BciT130I	CCWGG	2 cut(s)	441, 786
BcnI	CCSGG	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	81, 243
BfaI	CTAG	2 cut(s)	171, 536
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	570
BisI	GCNGC	1 cut(s)	735
BlsI	GCNGC	1 cut(s)	736
Bme1390I	CCNGG	3 cut(s)	352, 441, 786
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmrFI	CCNGG	3 cut(s)	352, 441, 786
BmsI	GCATC	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	861
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	785
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	320
BseBI	CCWGG	2 cut(s)	441, 786
BseDI	CCNNGG	1 cut(s)	785
BseGI	GGATG	3 cut(s)	477, 880, 1034
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseRI	GAGGAG	2 cut(s)	747, 817
Bsh1285I	CGRYCG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	699
BsiSI	CCGG	2 cut(s)	321, 352
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	81, 243
BsmBI	CGTCTC	2 cut(s)	81, 243
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	24, 370, 379, 696
BspACI	CCGC	3 cut(s)	5, 324, 734
BspANI	GGCC	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	633
BspMI	ACCTGC	1 cut(s)	570
BspPI	GGATC	2 cut(s)	19, 374
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	785
BssMI	GATC	4 cut(s)	24, 370, 379, 696
BssNAI	GTATAC	1 cut(s)	891
Bst1107I	GTATAC	1 cut(s)	891
Bst2UI	CCWGG	2 cut(s)	441, 786
Bst4CI	ACNGT	2 cut(s)	296, 996
Bst6I	CTCTTC	3 cut(s)	330, 835, 914
BstC8I	GCNNGC	3 cut(s)	322, 901, 1010
BstDEI	CTNAG	3 cut(s)	50, 408, 413
BstF5I	GGATG	3 cut(s)	477, 880, 1034
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	4 cut(s)	27, 373, 382, 699
BstMAI	GTCTC	2 cut(s)	81, 243
BstMBI	GATC	4 cut(s)	24, 370, 379, 696
BstMCI	CGRYCG	1 cut(s)	699
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 401, 1009
BstNI	CCWGG	2 cut(s)	441, 786
BstSCI	CCNGG	3 cut(s)	350, 439, 784
BstV2I	GAAGAC	1 cut(s)	861
BstZ17I	GTATAC	1 cut(s)	891
BsuRI	GGCC	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	477, 880, 1034
BveI	ACCTGC	1 cut(s)	570
Cac8I	GCNNGC	3 cut(s)	322, 901, 1010
CciI	TCATGA	1 cut(s)	633
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	4 cut(s)	157, 287, 347, 634
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	3 cut(s)	50, 408, 413
DpnI	GATC	4 cut(s)	26, 372, 381, 698
DpnII	GATC	4 cut(s)	24, 370, 379, 696
Eam1104I	CTCTTC	3 cut(s)	330, 835, 914
EarI	CTCTTC	3 cut(s)	330, 835, 914
Eco47I	GGWCC	1 cut(s)	296
Eco47III	AGCGCT	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	816
EcoRII	CCWGG	2 cut(s)	439, 784
Esp3I	CGTCTC	2 cut(s)	81, 243
FaeI	CATG	4 cut(s)	160, 290, 350, 637
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	4 cut(s)	156, 286, 346, 633
FauNDI	CATATG	1 cut(s)	812
FblI	GTMKAC	1 cut(s)	890
Fnu4HI	GCNGC	1 cut(s)	735
FokI	GGATG	3 cut(s)	484, 887, 1021
Fsp4HI	GCNGC	1 cut(s)	735
FspBI	CTAG	2 cut(s)	171, 536
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	735
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	321, 352
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	4 cut(s)	160, 290, 350, 637
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HindIII	AAGCTT	2 cut(s)	200, 1016
HpaII	CCGG	2 cut(s)	321, 352
HphI	GGTGA	3 cut(s)	30, 233, 848
Hpy166II	GTNNAC	3 cut(s)	580, 891, 946
Hpy188I	TCNGA	2 cut(s)	384, 696
Hpy188III	TCNNGA	4 cut(s)	113, 377, 536, 634
Hpy8I	GTNNAC	3 cut(s)	580, 891, 946
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	296, 996
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	4 cut(s)	404, 619, 656, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 401, 1009
HpyF3I	CTNAG	3 cut(s)	50, 408, 413
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	160, 290, 350, 637
HspAI	GCGC	1 cut(s)	68
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	24, 370, 379, 696
LmnI	GCTCC	1 cut(s)	134
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	2 cut(s)	171, 536
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	4 cut(s)	290, 605, 626, 815
MalI	GATC	4 cut(s)	26, 372, 381, 698
MboI	GATC	4 cut(s)	24, 370, 379, 696
MluCI	AATT	2 cut(s)	450, 657
MlyI	GAGTC	2 cut(s)	118, 339
MnlI	CCTC	6 cut(s)	91, 468, 768, 795, 838, 972
MreI	CGCCGGCG	1 cut(s)	320
MroNI	GCCGGC	1 cut(s)	320
MseI	TTAA	1 cut(s)	824
MslI	CAYNNNNRTG	1 cut(s)	723
MspI	CCGG	2 cut(s)	321, 352
MspR9I	CCNGG	3 cut(s)	352, 441, 786
MvaI	CCWGG	2 cut(s)	441, 786
MwoI	GCNNNNNNNGC	3 cut(s)	321, 401, 1009
NaeI	GCCGGC	1 cut(s)	322
NciI	CCSGG	1 cut(s)	352
NdeI	CATATG	1 cut(s)	812
NdeII	GATC	4 cut(s)	24, 370, 379, 696
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	4 cut(s)	160, 290, 350, 637
NmuCI	GTSAC	2 cut(s)	290, 605
PagI	TCATGA	1 cut(s)	633
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	8 cut(s)	12, 58, 184, 259, 499, 807, 927, 987
PfoI	TCCNGGA	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	736
Ple19I	CGATCG	1 cut(s)	699
PleI	GAGTC	2 cut(s)	117, 338
PpsI	GAGTC	2 cut(s)	117, 338
PsiI	TTATAA	1 cut(s)	690
Psp6I	CCWGG	2 cut(s)	439, 784
PspGI	CCWGG	2 cut(s)	439, 784
PspPI	GGNCC	1 cut(s)	296
PvuI	CGATCG	1 cut(s)	699
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	723
SaqAI	TTAA	1 cut(s)	824
SatI	GCNGC	1 cut(s)	735
Sau3AI	GATC	4 cut(s)	24, 370, 379, 696
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	2 cut(s)	118, 339
ScrFI	CCNGG	3 cut(s)	352, 441, 786
SfaNI	GCATC	1 cut(s)	413
SgrAI	CRCCGGYG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	723
Sse9I	AATT	2 cut(s)	450, 657
SsiI	CCGC	3 cut(s)	5, 324, 734
SspMI	CTAG	2 cut(s)	171, 536
StyD4I	CCNGG	3 cut(s)	350, 439, 784
TaaI	ACNGT	2 cut(s)	296, 996
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	5 cut(s)	74, 190, 333, 969, 977
TasI	AATT	2 cut(s)	450, 657
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	8 cut(s)	12, 58, 184, 259, 499, 807, 927, 987
Tru1I	TTAA	1 cut(s)	824
Tru9I	TTAA	1 cut(s)	824
TseFI	GTSAC	2 cut(s)	290, 605
Tsp45I	GTSAC	2 cut(s)	290, 605
TspDTI	ATGAA	7 cut(s)	143, 145, 528, 567, 600, 657, 799
VpaK11BI	GGWCC	1 cut(s)	296
XbaI	TCTAGA	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	890
XspI	CTAG	2 cut(s)	171, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.