Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Forward (+)

36604486 .. 36609315

Gene Structure 4830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCCATAAAGGACATTGGTTTCATTGAAGGTTGTCTTCCTGAGGAATTAAAGAAGGTACTTCTTTCTGTAGCTTCTGAATGGGGGGATGTAGTGGATGACATGAATGCCTTGCAGGTCATCCCGTTGAAGGGGGCCATGACTAATGAGGTGTATCAATTAAATTGGCCAACTAGGAATGGTGATCAACTCCGAAAAGTTCTAGTCCGGGTTTATGGCGAAGGGGTTGACCTGTTTTTTAATAGGGATGATGAAATTAGGACCTTTGAGTGCATGTCAAAGCACGGTCAGGGGCCGCGTCTTCTTGGACGGTTCCCAGATGGACGTGTTGAGGAGTTCATTCATGCTAGGACACTATCAGCTGCTGACCTCCGTGATCCTGAAATATCTGCTATCATAGCAGCTAAGATGAGAGAGTTCCACAATCTCGATATGCCTGGTTCAAGAAATGTAGTACTTTGGGACAGACTGAGAAACTGGCTTAATGAGGCTAAAACTTTGTGTTCAATAAAGGACAAAAAGGATTTTGGGTTGGATACTTTGGAGGAAGAAATTAATATGTTGGAGAAGAAACTGTCAGAGGACTACCAAGATATTGGGTTCTGTCACAACGACCTGCAGTACGGTAACATAATGATGGATGAAGAGACCAGATCAATCACTATAATCGATTATGAATATGCCAGTTACAATCCTGTTGCTTATGACCTTGCAAATCATTTCTGTGAAATGGTAGCAAACTACCACTCTGACGTACCTCACTTTTTGGACTATAAGAAATATCCAGGTCTGGAGGAGCGCCAGAGATTTGTGCGTCTATATCTGAGCTCTGCAGGGTACAATCCCAGTGATGCTGAGGTGGTGCAGTTAGTCAACAAAGTAGAGCAGTACACATTGGCAAACCATCTCTTTTGGGGATTATGGGGAATAATCTCGGGTTATGTTAACAAAATTGAATTTGACTACATGGAGTATGCGAGGCAGAGGTTTCAGCAATACTGGTTAAGAAAGCCAGCATTATTGGGTTCTTCAGGTGTTTCCGTGCGACAGAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

352

Amino Acids

40.87

Weight (kDa)

5.12

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	41 - 334	1.9e-99	Choline/ethanolamine kinase
APH	PF01636	66 - 244	1.2e-13	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 624
AccII	CGCG	1 cut(s)	298
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	2 cut(s)	3, 167
AcsI	RAATTY	1 cut(s)	956
AcuI	CTGAAG	1 cut(s)	1014
AfaI	GTAC	6 cut(s)	60, 456, 623, 756, 839, 890
AfiI	CCNNNNNNNGG	2 cut(s)	130, 131
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	5 cut(s)	29, 130, 444, 507, 956
AjiI	CACGTC	1 cut(s)	326
AjnI	CCWGG	2 cut(s)	436, 784
AluBI	AGCT	4 cut(s)	74, 362, 404, 828
AluI	AGCT	4 cut(s)	74, 362, 404, 828
Alw21I	GWGCWC	1 cut(s)	830
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	934
AoxI	GGCC	4 cut(s)	3, 135, 167, 293
ApeKI	GCWGC	2 cut(s)	362, 401
ApoI	RAATTY	1 cut(s)	956
AseI	ATTAAT	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	801
AspS9I	GGNCC	3 cut(s)	135, 261, 293
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	934
AvaII	GGWCC	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	42
BalI	TGGCCA	2 cut(s)	5, 169
BanII	GRGCYC	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	29, 293
Bbv12I	GWGCWC	1 cut(s)	830
BbvCI	CCTCAGC	1 cut(s)	855
BbvI	GCAGC	2 cut(s)	349, 413
BccI	CCATC	3 cut(s)	314, 631, 912
BciT130I	CCWGG	2 cut(s)	438, 786
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	641
BfaI	CTAG	3 cut(s)	174, 203, 348
BfmI	CTRYAG	3 cut(s)	69, 617, 831
BfoI	RGCGCY	1 cut(s)	802
BfuAI	ACCTGC	2 cut(s)	106, 624
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	3 cut(s)	296, 363, 402
BlsI	GCNGC	3 cut(s)	297, 364, 403
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	3 cut(s)	209, 438, 786
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	934
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	135, 261, 293
BmiI	GGNNCC	3 cut(s)	136, 294, 314
BmrFI	CCNGG	3 cut(s)	209, 438, 786
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	1 cut(s)	841
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	29, 293
BpmI	CTGGAG	1 cut(s)	812
Bpu10I	CCTNAGC	1 cut(s)	855
BpuMI	CCSGG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 131
Bse1I	ACTGG	4 cut(s)	482, 684, 846, 1004
Bse21I	CCTNAGG	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	438, 786
BseCI	ATCGAT	1 cut(s)	669
BseGI	GGATG	5 cut(s)	94, 103, 120, 253, 646
BseLI	CCNNNNNNNGG	2 cut(s)	130, 131
BseMII	CTCAG	4 cut(s)	33, 461, 815, 846
BseNI	ACTGG	4 cut(s)	482, 684, 846, 1004
BseRI	GAGGAG	2 cut(s)	347, 809
BseXI	GCAGC	2 cut(s)	349, 413
BsgI	GTGCAG	1 cut(s)	884
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	4 cut(s)	5, 137, 169, 295
BshVI	ATCGAT	1 cut(s)	669
BsiHKAI	GWGCWC	1 cut(s)	830
BsiHKCI	CYCGRG	1 cut(s)	934
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	130, 131
BsmAI	GTCTC	1 cut(s)	641
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	5, 137, 169, 295
Bso31I	GGTCTC	1 cut(s)	641
BsoBI	CYCGRG	1 cut(s)	934
Bsp1286I	GDGCHC	1 cut(s)	830
Bsp143I	GATC	3 cut(s)	184, 376, 653
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	4 cut(s)	5, 137, 169, 295
BspCNI	CTCAG	4 cut(s)	34, 462, 816, 847
BspDI	ATCGAT	1 cut(s)	669
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	136, 294, 314
BspMAI	CTGCAG	2 cut(s)	621, 835
BspMI	ACCTGC	2 cut(s)	106, 624
BspPI	GGATC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	641
BsrI	ACTGG	4 cut(s)	482, 684, 846, 1004
BssMI	GATC	3 cut(s)	184, 376, 653
Bst2UI	CCWGG	2 cut(s)	438, 786
Bst4CI	ACNGT	4 cut(s)	287, 312, 576, 626
Bst6I	CTCTTC	1 cut(s)	639
BstC8I	GCNNGC	1 cut(s)	1014
BstDEI	CTNAG	5 cut(s)	42, 405, 470, 824, 855
BstF5I	GGATG	5 cut(s)	94, 103, 120, 253, 646
BstFNI	CGCG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	3 cut(s)	187, 379, 656
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	3 cut(s)	184, 376, 653
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	438, 786
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	3 cut(s)	207, 436, 784
BstSFI	CTRYAG	3 cut(s)	69, 617, 831
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	349, 413
BstV2I	GAAGAC	2 cut(s)	29, 293
BstXI	CCANNNNNNTGG	1 cut(s)	596
Bsu15I	ATCGAT	1 cut(s)	669
Bsu36I	CCTNAGG	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	4 cut(s)	5, 137, 169, 295
BsuTUI	ATCGAT	1 cut(s)	669
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	5 cut(s)	94, 103, 120, 253, 646
BtsIMutI	CAGTG	1 cut(s)	853
BveI	ACCTGC	2 cut(s)	106, 624
Cac8I	GCNNGC	1 cut(s)	1014
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	1 cut(s)	801
Cfr13I	GGNCC	3 cut(s)	135, 261, 293
ClaI	ATCGAT	1 cut(s)	669
CseI	GACGC	2 cut(s)	287, 803
Csp6I	GTAC	6 cut(s)	59, 455, 622, 755, 838, 889
CviAII	CATG	5 cut(s)	103, 139, 274, 344, 967
CviQI	GTAC	6 cut(s)	59, 455, 622, 755, 838, 889
DdeI	CTNAG	5 cut(s)	42, 405, 470, 824, 855
DpnI	GATC	3 cut(s)	186, 378, 655
DpnII	GATC	3 cut(s)	184, 376, 653
EaeI	YGGCCR	2 cut(s)	3, 167
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	828
Eco24I	GRGCYC	1 cut(s)	830
Eco31I	GGTCTC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	828
Eco57I	CTGAAG	1 cut(s)	1014
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	934
EcoICRI	GAGCTC	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	436, 784
EcoT38I	GRGCYC	1 cut(s)	830
FaeI	CATG	5 cut(s)	106, 142, 277, 347, 970
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	5 cut(s)	102, 138, 273, 343, 966
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	296, 363, 402
FokI	GGATG	5 cut(s)	101, 107, 110, 260, 653
FriOI	GRGCYC	1 cut(s)	830
Fsp4HI	GCNGC	3 cut(s)	296, 363, 402
FspBI	CTAG	3 cut(s)	174, 203, 348
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	3 cut(s)	296, 363, 402
GsuI	CTGGAG	1 cut(s)	812
HaeII	RGCGCY	1 cut(s)	802
HaeIII	GGCC	4 cut(s)	5, 137, 169, 295
HapII	CCGG	1 cut(s)	208
HgaI	GACGC	2 cut(s)	287, 803
HhaI	GCGC	1 cut(s)	801
Hin1II	CATG	5 cut(s)	106, 142, 277, 347, 970
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HincII	GTYRAC	3 cut(s)	229, 874, 946
HindII	GTYRAC	3 cut(s)	229, 874, 946
HinfI	GANTC	1 cut(s)	1051
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	4 cut(s)	229, 874, 891, 946
Hpy188I	TCNGA	5 cut(s)	79, 194, 580, 751, 825
Hpy188III	TCNNGA	5 cut(s)	41, 380, 428, 444, 791
Hpy8I	GTNNAC	4 cut(s)	229, 874, 891, 946
HpyAV	CCTTC	4 cut(s)	23, 49, 124, 215
HpyCH4III	ACNGT	4 cut(s)	287, 312, 576, 626
HpyCH4IV	ACGT	2 cut(s)	325, 753
HpyCH4V	TGCA	6 cut(s)	115, 273, 619, 713, 833, 865
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	5 cut(s)	42, 405, 470, 824, 855
HpySE526I	ACGT	2 cut(s)	325, 753
Hsp92II	CATG	5 cut(s)	106, 142, 277, 347, 970
HspAI	GCGC	1 cut(s)	799
Ksp22I	TGATCA	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	3 cut(s)	184, 376, 653
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	2 cut(s)	349, 413
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	3 cut(s)	174, 203, 348
MaeII	ACGT	2 cut(s)	325, 753
MaeIII	GTNAC	3 cut(s)	605, 626, 686
MalI	GATC	3 cut(s)	186, 378, 655
MboI	GATC	3 cut(s)	184, 376, 653
MboII	GAAGA	6 cut(s)	29, 293, 560, 580, 656, 1020
MhlI	GDGCHC	1 cut(s)	830
MlsI	TGGCCA	2 cut(s)	5, 169
MluCI	AATT	7 cut(s)	47, 158, 163, 255, 552, 951, 956
MluNI	TGGCCA	2 cut(s)	5, 169
MmeI	TCCRAC	2 cut(s)	513, 543
Mox20I	TGGCCA	2 cut(s)	5, 169
MscI	TGGCCA	2 cut(s)	5, 169
MseI	TTAA	7 cut(s)	50, 161, 240, 483, 555, 945, 1004
MslI	CAYNNNNRTG	2 cut(s)	635, 723
Msp20I	TGGCCA	2 cut(s)	5, 169
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	3 cut(s)	209, 438, 786
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	438, 786
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	3 cut(s)	184, 376, 653
NlaIII	CATG	5 cut(s)	106, 142, 277, 347, 970
NlaIV	GGNNCC	3 cut(s)	136, 294, 314
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	277
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	1051
PkrI	GCNGC	3 cut(s)	297, 364, 403
PpuMI	RGGWCCY	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	830
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	436, 784
PspGI	CCWGG	2 cut(s)	436, 784
PspN4I	GGNNCC	3 cut(s)	136, 294, 314
PspPI	GGNCC	3 cut(s)	135, 261, 293
PspPPI	RGGWCCY	1 cut(s)	261
PstI	CTGCAG	2 cut(s)	621, 835
PstNI	CAGNNNCTG	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	6 cut(s)	60, 456, 623, 756, 839, 890
RsaNI	GTAC	6 cut(s)	59, 455, 622, 755, 838, 889
RseI	CAYNNNNRTG	2 cut(s)	635, 723
SacI	GAGCTC	1 cut(s)	830
SaqAI	TTAA	7 cut(s)	50, 161, 240, 483, 555, 945, 1004
SatI	GCNGC	3 cut(s)	296, 363, 402
Sau3AI	GATC	3 cut(s)	184, 376, 653
Sau96I	GGNCC	3 cut(s)	135, 261, 293
ScaI	AGTACT	1 cut(s)	456
ScrFI	CCNGG	3 cut(s)	209, 438, 786
SduI	GDGCHC	1 cut(s)	830
SfaNI	GCATC	1 cut(s)	841
SfcI	CTRYAG	3 cut(s)	69, 617, 831
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	635, 723
Sse9I	AATT	7 cut(s)	47, 158, 163, 255, 552, 951, 956
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	3 cut(s)	174, 203, 348
SstI	GAGCTC	1 cut(s)	830
StyD4I	CCNGG	3 cut(s)	207, 436, 784
TaaI	ACNGT	4 cut(s)	287, 312, 576, 626
TaiI	ACGT	2 cut(s)	328, 756
TaqI	TCGA	2 cut(s)	429, 669
TasI	AATT	7 cut(s)	47, 158, 163, 255, 552, 951, 956
TatI	WGTACW	2 cut(s)	454, 888
TauI	GCSGC	1 cut(s)	298
TfiI	GAWTC	1 cut(s)	1051
Tru1I	TTAA	7 cut(s)	50, 161, 240, 483, 555, 945, 1004
Tru9I	TTAA	7 cut(s)	50, 161, 240, 483, 555, 945, 1004
TscAI	CASTG	1 cut(s)	853
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	2 cut(s)	362, 401
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	7 cut(s)	13, 119, 267, 328, 332, 657, 690
TspGWI	ACGGA	2 cut(s)	362, 1030
TspRI	CASTG	1 cut(s)	853
VpaK11BI	GGWCC	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	1 cut(s)	956
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	3 cut(s)	174, 203, 348
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.