Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003998

Physical Location & Seq

Genomic Coordinates Forward (+)

33487872 .. 33491368

Gene Structure 3497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013577

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCCATAAAGGACATTGGTTTCATTGAAGGTTGTCTTCCTGAGGAATTAAAGAAGGTACTTCTTTCTGTAGCTTCTGAATGGGGGGATGTAGTGGATGACATGAATGCCTTGCAGGTCATCCCGTTGAAGGGGGCCATGACTAATGAGGTGTATCAATTAAATTGGCCGACTAGGAATGGTGATCAACTCCGGAAAGTTCTGATCCGGGTTTATGGCGAAGGGGTTGACCTGTTTTTTAATAGGGATGACGAAATTAGGACCTTTGAGTGCATGTCCAAGCACGGTCAGGGGCCGCGTCTTCTTGGACGGTTCCCAGATGGACGTGTTGAGGAGTTCATTCATGCTAGGACACTATCAGCTGCTGACCTCCGTGATCCTGAAATATCTGCTATCATAGCAGCTAAGATGAGAGAGTTCCACAATCTGGATATGCCTGGTTCAAGAAATGTAGTACTTTGGGACAGACTGAGAAACTGGCTTAGTGAGGCTAAAACTTTGTGTTCAATAAAGGACAAAAAGGATTTTGGGTTGGATACTTTGGAGGAAGAAATTAATATGTTGGAGAAGAAACTGTCAGAGGACTATCAAGATATTGGGTTCTGTCACAACGACCTGCAGTACGGTAACATAATGATGGATGAAGAGACCAGATCAATCACTATAATCGATTATGAATATGCCAGTTACAATCCTGTTGCTTATGACCTTGCAAATCATTTCTGTGAAATGGTAGCAAACTACCACTCTGATGTACCTCACTTTTTGGACTATAAGAAATATCCAGGGTACGATCCCAGTGATGCTGAGGTGGTGCAGTTAGTCAACAAAGTAGAGCAGTACACATTGGCAAACCATCTCTTTTGGGGATTATGGGGAATAATCTCGGGGTATGTTAACAAAATTGAATTTGACTACATGGAGTATGCGAGGCAGCGGTTTCAGCAATACTGGTTAAGGAAGCCAGCATTATTGGGTTCTTCAGGTGTTTCCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004103 GO:0004305 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006656 GO:0006657 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009611 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046337 GO:0046470 GO:0046474 GO:0046486 GO:0050896 GO:0071704 GO:0090407 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko05231 map00564 map01100 map05231

Pfam Domains

Protein Families

Choline_kin_N Choline_kinase

Protein Analysis

333

Amino Acids

38.43

Weight (kDa)

4.93

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	41 - 318	2e-87	Choline/ethanolamine kinase
APH	PF01636	112 - 241	3.5e-13	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71697 AT4G09760 AT4G09760 AT4G09760 AT4G09760
fragaria_vesca	FvH4_2g12980 FvH4_2g12980 FvH4_2g12980 FvH4_2g12980
malus_domestica	MD05G1034200.v1.1 MD10G1036100.v1.1
prunus_persica	Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1 Prupe.8G041800_v2.0.a1
pyrus_communis	pycom05g02470 pycom10g02450
rosa_chinensis	RchiOBHm_Chr6g0274111
rosa_laevigata	RLG00000013577
rosa_multiflora	Rmu_ssc0000413.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194640
rosa_rugosa	Rorug06G0078500 Rorug06G0078500 Rorug06G0078600 Rorug06G0078700 Rorug06G0078700 Rorug06G0078700 Rorug06G0078800
rosa_samantha	Rh6AG194600 Rh6BG198700 Rh6CG198500
rosa_wichuraiana	Rw0G007920 Rw6G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 624
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccII	CGCG	1 cut(s)	298
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	2 cut(s)	296, 937
AclWI	GGATC	3 cut(s)	199, 371, 788
AcoI	YGGCCR	2 cut(s)	3, 167
AcsI	RAATTY	1 cut(s)	908
AcuI	CTGAAG	1 cut(s)	966
AfaI	GTAC	6 cut(s)	60, 456, 623, 756, 791, 842
AfiI	CCNNNNNNNGG	3 cut(s)	130, 131, 427
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	5 cut(s)	29, 130, 444, 507, 908
AjiI	CACGTC	1 cut(s)	326
AjnI	CCWGG	2 cut(s)	436, 784
AluBI	AGCT	3 cut(s)	74, 362, 404
AluI	AGCT	3 cut(s)	74, 362, 404
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	3 cut(s)	199, 371, 788
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	886
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	4 cut(s)	3, 135, 167, 293
ApeKI	GCWGC	3 cut(s)	362, 401, 934
ApoI	RAATTY	1 cut(s)	908
AseI	ATTAAT	1 cut(s)	555
AspS9I	GGNCC	3 cut(s)	135, 261, 293
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	886
AvaII	GGWCC	1 cut(s)	261
AxyI	CCTNAGG	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	29, 293
BbvCI	CCTCAGC	1 cut(s)	807
BbvI	GCAGC	3 cut(s)	349, 413, 946
BccI	CCATC	3 cut(s)	314, 631, 864
BciT130I	CCWGG	2 cut(s)	438, 786
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	641
BfaI	CTAG	2 cut(s)	174, 348
BfmI	CTRYAG	2 cut(s)	69, 617
BfuAI	ACCTGC	2 cut(s)	106, 624
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	4 cut(s)	296, 363, 402, 935
BlsI	GCNGC	4 cut(s)	297, 364, 403, 936
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	3 cut(s)	209, 438, 786
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	886
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	135, 261, 293
BmiI	GGNNCC	3 cut(s)	136, 294, 314
BmrFI	CCNGG	3 cut(s)	209, 438, 786
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	1 cut(s)	793
BmuI	ACTGGG	1 cut(s)	792
BpiI	GAAGAC	2 cut(s)	29, 293
Bpu10I	CCTNAGC	1 cut(s)	807
BpuMI	CCSGG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	641
BsaJI	CCNNGG	1 cut(s)	785
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 131, 427
Bse1I	ACTGG	4 cut(s)	482, 684, 798, 956
Bse21I	CCTNAGG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	438, 786
BseCI	ATCGAT	1 cut(s)	669
BseDI	CCNNGG	1 cut(s)	785
BseGI	GGATG	5 cut(s)	94, 103, 120, 253, 646
BseLI	CCNNNNNNNGG	3 cut(s)	130, 131, 427
BseMII	CTCAG	3 cut(s)	33, 461, 798
BseNI	ACTGG	4 cut(s)	482, 684, 798, 956
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	3 cut(s)	349, 413, 946
BsgI	GTGCAG	1 cut(s)	836
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	4 cut(s)	5, 137, 169, 295
BshVI	ATCGAT	1 cut(s)	669
BsiHKCI	CYCGRG	1 cut(s)	886
BsiSI	CCGG	2 cut(s)	193, 208
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	3 cut(s)	130, 131, 427
BsmAI	GTCTC	1 cut(s)	641
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	5, 137, 169, 295
Bso31I	GGTCTC	1 cut(s)	641
BsoBI	CYCGRG	1 cut(s)	886
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	184, 204, 376, 653, 793
BspACI	CCGC	2 cut(s)	296, 937
BspANI	GGCC	4 cut(s)	5, 137, 169, 295
BspCNI	CTCAG	3 cut(s)	34, 462, 799
BspDI	ATCGAT	1 cut(s)	669
BspEI	TCCGGA	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	136, 294, 314
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	2 cut(s)	106, 624
BspPI	GGATC	3 cut(s)	199, 371, 788
BspTNI	GGTCTC	1 cut(s)	641
BsrI	ACTGG	4 cut(s)	482, 684, 798, 956
BssECI	CCNNGG	1 cut(s)	785
BssMI	GATC	5 cut(s)	184, 204, 376, 653, 793
Bst2UI	CCWGG	2 cut(s)	438, 786
Bst4CI	ACNGT	4 cut(s)	287, 312, 576, 626
Bst6I	CTCTTC	1 cut(s)	639
BstC8I	GCNNGC	1 cut(s)	966
BstDEI	CTNAG	5 cut(s)	42, 405, 470, 482, 807
BstF5I	GGATG	5 cut(s)	94, 103, 120, 253, 646
BstFNI	CGCG	1 cut(s)	298
BstKTI	GATC	5 cut(s)	187, 207, 379, 656, 796
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	5 cut(s)	184, 204, 376, 653, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 943
BstNI	CCWGG	2 cut(s)	438, 786
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	3 cut(s)	207, 436, 784
BstSFI	CTRYAG	2 cut(s)	69, 617
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	349, 413, 946
BstV2I	GAAGAC	2 cut(s)	29, 293
Bsu15I	ATCGAT	1 cut(s)	669
Bsu36I	CCTNAGG	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	4 cut(s)	5, 137, 169, 295
BsuTUI	ATCGAT	1 cut(s)	669
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	5 cut(s)	94, 103, 120, 253, 646
BtsIMutI	CAGTG	1 cut(s)	805
BveI	ACCTGC	2 cut(s)	106, 624
Cac8I	GCNNGC	1 cut(s)	966
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	135, 261, 293
ClaI	ATCGAT	1 cut(s)	669
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	6 cut(s)	59, 455, 622, 755, 790, 841
CviAII	CATG	5 cut(s)	103, 139, 274, 344, 919
CviQI	GTAC	6 cut(s)	59, 455, 622, 755, 790, 841
DdeI	CTNAG	5 cut(s)	42, 405, 470, 482, 807
DpnI	GATC	5 cut(s)	186, 206, 378, 655, 795
DpnII	GATC	5 cut(s)	184, 204, 376, 653, 793
EaeI	YGGCCR	2 cut(s)	3, 167
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	966
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	886
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	436, 784
FaeI	CATG	5 cut(s)	106, 142, 277, 347, 922
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	5 cut(s)	102, 138, 273, 343, 918
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	296, 363, 402, 935
FokI	GGATG	5 cut(s)	101, 107, 110, 260, 653
Fsp4HI	GCNGC	4 cut(s)	296, 363, 402, 935
FspBI	CTAG	2 cut(s)	174, 348
GluI	GCNGC	4 cut(s)	296, 363, 402, 935
HaeIII	GGCC	4 cut(s)	5, 137, 169, 295
HapII	CCGG	2 cut(s)	193, 208
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	5 cut(s)	106, 142, 277, 347, 922
HincII	GTYRAC	3 cut(s)	229, 826, 898
HindII	GTYRAC	3 cut(s)	229, 826, 898
HpaI	GTTAAC	1 cut(s)	898
HpaII	CCGG	2 cut(s)	193, 208
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	4 cut(s)	229, 826, 843, 898
Hpy188I	TCNGA	4 cut(s)	79, 204, 580, 751
Hpy188III	TCNNGA	6 cut(s)	41, 193, 380, 428, 444, 590
Hpy8I	GTNNAC	4 cut(s)	229, 826, 843, 898
HpyAV	CCTTC	4 cut(s)	23, 49, 124, 215
HpyCH4III	ACNGT	4 cut(s)	287, 312, 576, 626
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	5 cut(s)	115, 273, 619, 713, 817
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 943
HpyF3I	CTNAG	5 cut(s)	42, 405, 470, 482, 807
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	5 cut(s)	106, 142, 277, 347, 922
Kpn2I	TCCGGA	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	898
Kzo9I	GATC	5 cut(s)	184, 204, 376, 653, 793
Lsp1109I	GCAGC	3 cut(s)	349, 413, 946
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	2 cut(s)	174, 348
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	3 cut(s)	605, 626, 686
MalI	GATC	5 cut(s)	186, 206, 378, 655, 795
MboI	GATC	5 cut(s)	184, 204, 376, 653, 793
MboII	GAAGA	6 cut(s)	29, 293, 560, 580, 656, 972
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	47, 158, 163, 255, 552, 903, 908
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	513, 543
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	50, 161, 240, 555, 897, 956
MslI	CAYNNNNRTG	3 cut(s)	635, 723, 750
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	362, 937
MspI	CCGG	2 cut(s)	193, 208
MspR9I	CCNGG	3 cut(s)	209, 438, 786
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	438, 786
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	398, 943
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	5 cut(s)	184, 204, 376, 653, 793
NlaIII	CATG	5 cut(s)	106, 142, 277, 347, 922
NlaIV	GGNNCC	3 cut(s)	136, 294, 314
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	277
PctI	GAATGC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	4 cut(s)	297, 364, 403, 936
PpuMI	RGGWCCY	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	436, 784
PspGI	CCWGG	2 cut(s)	436, 784
PspN4I	GGNNCC	3 cut(s)	136, 294, 314
PspPI	GGNCC	3 cut(s)	135, 261, 293
PspPPI	RGGWCCY	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	6 cut(s)	60, 456, 623, 756, 791, 842
RsaNI	GTAC	6 cut(s)	59, 455, 622, 755, 790, 841
RseI	CAYNNNNRTG	3 cut(s)	635, 723, 750
SaqAI	TTAA	6 cut(s)	50, 161, 240, 555, 897, 956
SatI	GCNGC	4 cut(s)	296, 363, 402, 935
Sau3AI	GATC	5 cut(s)	184, 204, 376, 653, 793
Sau96I	GGNCC	3 cut(s)	135, 261, 293
ScaI	AGTACT	1 cut(s)	456
ScrFI	CCNGG	3 cut(s)	209, 438, 786
SfaNI	GCATC	1 cut(s)	793
SfcI	CTRYAG	2 cut(s)	69, 617
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	3 cut(s)	635, 723, 750
Sse9I	AATT	7 cut(s)	47, 158, 163, 255, 552, 903, 908
SsiI	CCGC	2 cut(s)	296, 937
SspMI	CTAG	2 cut(s)	174, 348
StyD4I	CCNGG	3 cut(s)	207, 436, 784
TaaI	ACNGT	4 cut(s)	287, 312, 576, 626
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	669
TasI	AATT	7 cut(s)	47, 158, 163, 255, 552, 903, 908
TatI	WGTACW	2 cut(s)	454, 840
TauI	GCSGC	1 cut(s)	298
Tru1I	TTAA	6 cut(s)	50, 161, 240, 555, 897, 956
Tru9I	TTAA	6 cut(s)	50, 161, 240, 555, 897, 956
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	3 cut(s)	362, 401, 934
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	6 cut(s)	13, 119, 328, 332, 657, 690
TspGWI	ACGGA	2 cut(s)	362, 982
TspRI	CASTG	1 cut(s)	805
Van91I	CCANNNNNTGG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	1 cut(s)	908
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	2 cut(s)	174, 348
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.