AT1G71940

membrane protein At4g09580-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008356
Physical Location & Seq
Forward (+)
27078524 .. 27080248
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71940.2

Sequence Viewer

Length: 819 bp
ATGGCTCCGACTCGGATTCTAACCAGAGACGAAGAGCTTGGTGTTATTTCAGACGATGATGATTCTCCATCGGGTAAAAGATCTAAACTTGATCGCTTCCCTCTTAGCCGTTGGGAACTCGCCGTTTCTCTCGGTGTCTTCCTCGTCTTCTCCTCTGGACTCTGTTGTATCTACATGACCATGCCTGCTGCTGAATTTGGCAAACTCAAACTTCCAAGAAGCCTCGCTGATCTCCGTTTGCTCAAAGATAATCTAGCAAATTATGCGAATGAGTATCCGGCGCAGTTTGTTTTAGGGTATTGTGCAACGTACATTTTTATGCAGACCTTTATGATTCCAGGGACTATCTTCATGTCACTATTAGCTGGAGCTCTCTTTGGAGTATTCAAAGGTGTTGTCTTGGTTGTTTTCAATGCAACAGCAGGAGCTACCTCGTGTTTCTTTTTGTCGAAATTGATTGGTCGGCCGTTGATTACTTGGCTATGGCCTGACAAATTAAGATTCTTTCAAGCAGAGATTAGTAAGCGTAGAGATAAGCTTCTGAACTATATGTTGTTTCTGAGGATAACACCAACTCTGCCAAATCTTTTTATCAATCTTGCATCTCCTATAGTCGATGTACCTTTCCATGTCTTCTTTTTGGCGACATTGATTGGTCTCATTCCTGCAGCTTATATAACTGTCAGAGCTGGCCTTGCTATTGGAGATCTCAAATCGGTGAAAGATCTGTATGATTTCAAGACATTGTCAGTGCTTTTCCTCATCGGGTTTATCTCTATTCTTCCAACGATACTGAAAAGAAAGAAGATTGTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

272

Amino Acids

30.46

Weight (kDa)

9.43

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 112 - 231 1.5e-15 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 464
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 2 cut(s) 311, 621
AgsI TTSAA 5 cut(s) 388, 412, 509, 739, 815
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 7 cut(s) 37, 365, 371, 428, 538, 671, 689
AluI AGCT 7 cut(s) 37, 365, 371, 428, 538, 671, 689
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 2 cut(s) 21, 662
AoxI GGCC 3 cut(s) 464, 485, 691
ApeKI GCWGC 2 cut(s) 188, 668
ApoI RAATTY 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 730
BanII GRGCYC 1 cut(s) 373
BauI CACGAG 1 cut(s) 433
BbsI GAAGAC 3 cut(s) 130, 139, 625
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 2 cut(s) 175, 680
BccI CCATC 1 cut(s) 76
BceAI ACGGC 3 cut(s) 93, 107, 451
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 21, 662
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 2 cut(s) 609, 666
BfuI GTATCC 1 cut(s) 285
BglII AGATCT 3 cut(s) 80, 706, 724
BisI GCNGC 2 cut(s) 189, 669
BlsI GCNGC 2 cut(s) 190, 670
Bme1390I CCNGG 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 1 cut(s) 611
BpiI GAAGAC 3 cut(s) 130, 139, 625
BpmI CTGGAG 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 662
BsaJI CCNNGG 1 cut(s) 338
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 551
BseRI GAGGAG 1 cut(s) 142
BseX3I CGGCCG 1 cut(s) 464
BseXI GCAGC 2 cut(s) 175, 680
Bsh1285I CGRYCG 1 cut(s) 467
BshFI GGCC 3 cut(s) 466, 487, 693
BsiEI CGRYCG 1 cut(s) 467
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 278
BslFI GGGAC 1 cut(s) 355
BsmAI GTCTC 2 cut(s) 21, 662
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 3 cut(s) 466, 487, 693
Bso31I GGTCTC 1 cut(s) 662
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 5 cut(s) 80, 91, 229, 706, 724
BspANI GGCC 3 cut(s) 466, 487, 693
BspCNI CTCAG 1 cut(s) 552
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 670
BspQI GCTCTTC 1 cut(s) 27
BspTNI GGTCTC 1 cut(s) 662
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 5 cut(s) 80, 91, 229, 706, 724
BssSI CACGAG 1 cut(s) 433
Bst2BI CACGAG 1 cut(s) 433
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 186, 691
BstDEI CTNAG 2 cut(s) 104, 560
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 5 cut(s) 83, 94, 232, 709, 727
BstMAI GTCTC 2 cut(s) 21, 662
BstMBI GATC 5 cut(s) 80, 91, 229, 706, 724
BstMCI CGRYCG 1 cut(s) 467
BstMWI GCNNNNNNNGC 2 cut(s) 263, 695
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 2 cut(s) 609, 666
BstV1I GCAGC 2 cut(s) 175, 680
BstV2I GAAGAC 3 cut(s) 130, 139, 625
BstX2I RGATCY 3 cut(s) 80, 706, 724
BstYI RGATCY 3 cut(s) 80, 706, 724
BstZI CGGCCG 1 cut(s) 464
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 3 cut(s) 466, 487, 693
BtsIMutI CAGTG 1 cut(s) 756
Cac8I GCNNGC 2 cut(s) 186, 691
CfoI GCGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 310, 620
CviAII CATG 4 cut(s) 175, 181, 352, 629
CviQI GTAC 2 cut(s) 310, 620
DdeI CTNAG 2 cut(s) 104, 560
DpnI GATC 5 cut(s) 82, 93, 231, 708, 726
DpnII GATC 5 cut(s) 80, 91, 229, 706, 724
EaeI YGGCCR 1 cut(s) 464
EagI CGGCCG 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 371
EclXI CGGCCG 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 662
Eco52I CGGCCG 1 cut(s) 464
Eco53kI GAGCTC 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 4 cut(s) 178, 184, 355, 632
FaqI GGGAC 1 cut(s) 355
FatI CATG 4 cut(s) 174, 180, 351, 628
Fnu4HI GCNGC 2 cut(s) 189, 669
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 2 cut(s) 189, 669
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 282
GluI GCNGC 2 cut(s) 189, 669
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 3 cut(s) 466, 487, 693
HapII CCGG 1 cut(s) 278
HhaI GCGC 1 cut(s) 283
Hin1II CATG 4 cut(s) 178, 184, 355, 632
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 6 cut(s) 10, 16, 62, 159, 334, 501
HpaII CCGG 1 cut(s) 278
HphI GGTGA 1 cut(s) 730
Hpy188I TCNGA 6 cut(s) 9, 15, 52, 543, 561, 686
Hpy188III TCNNGA 2 cut(s) 156, 739
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 5 cut(s) 305, 322, 416, 602, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 695
HpyF3I CTNAG 2 cut(s) 104, 560
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 4 cut(s) 178, 184, 355, 632
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 5 cut(s) 80, 91, 229, 706, 724
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 10, 368, 425
Lsp1109I GCAGC 2 cut(s) 175, 680
LweI GCATC 1 cut(s) 611
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 354
MalI GATC 5 cut(s) 82, 93, 231, 708, 726
MboI GATC 5 cut(s) 80, 91, 229, 706, 724
MboII GAAGA 7 cut(s) 44, 130, 139, 340, 625, 773, 817
MflI RGATCY 3 cut(s) 80, 706, 724
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 4 cut(s) 194, 259, 452, 494
MlyI GAGTC 2 cut(s) 4, 153
MmeI TCCRAC 2 cut(s) 32, 809
MnlI CCTC 7 cut(s) 111, 152, 163, 233, 442, 555, 770
MseI TTAA 1 cut(s) 497
MslI CAYNNNNRTG 2 cut(s) 179, 317
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 263, 695
NdeII GATC 5 cut(s) 80, 91, 229, 706, 724
NlaIII CATG 4 cut(s) 178, 184, 355, 632
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 27
PfeI GAWTC 4 cut(s) 16, 62, 334, 501
PflFI GACNNNGTC 1 cut(s) 745
PkrI GCNGC 2 cut(s) 190, 670
PleI GAGTC 2 cut(s) 4, 153
PpsI GAGTC 2 cut(s) 4, 153
Psp124BI GAGCTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 3 cut(s) 80, 706, 724
PsyI GACNNNGTC 1 cut(s) 745
RsaI GTAC 2 cut(s) 311, 621
RsaNI GTAC 2 cut(s) 310, 620
RseI CAYNNNNRTG 2 cut(s) 179, 317
SacI GAGCTC 1 cut(s) 373
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 2 cut(s) 189, 669
Sau3AI GATC 5 cut(s) 80, 91, 229, 706, 724
SchI GAGTC 2 cut(s) 4, 153
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 2 cut(s) 609, 666
SmiMI CAYNNNNRTG 2 cut(s) 179, 317
Sse9I AATT 4 cut(s) 194, 259, 452, 494
SspMI CTAG 1 cut(s) 254
SstI GAGCTC 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 1 cut(s) 682
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 449, 615
TasI AATT 4 cut(s) 194, 259, 452, 494
TfiI GAWTC 4 cut(s) 16, 62, 334, 501
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TscAI CASTG 1 cut(s) 756
TseFI GTSAC 1 cut(s) 354
TseI GCWGC 2 cut(s) 188, 668
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 1 cut(s) 340
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 756
Tth111I GACNNNGTC 1 cut(s) 745
XapI RAATTY 1 cut(s) 194
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.