Rh6DG174800

membrane protein At4g09580-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008356
Physical Location & Seq
Forward (+)
30737805 .. 30741709
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG174800.1

Sequence Viewer

Length: 849 bp
ATGATGGCGGCTCCGAGAAATCTGGTGGGGCTCAGGGATGAAGAGAATGCCAAGGCGGCGGCGGCGGAGGACGACGACCACCAGGACGATGATTGGTCCACCGGCAAGAAGCCCAAGTCGGAGCGCTTGCCCCTCTCCCGCTGGGAGGTCGCCGCTGCTCTCTCCGTCTTCTTCATATTCTCCTCCGGCCTTTTCTGTGTCTACTTGACCATGCCCGCCGCCGATTACGGTAAACTCAAGCTTCCACGCACCATTGCCGATCTTCGCTTGCTCAAAGATCATCTTGGGACCTATGCAAACGATTATCCAGCTCAATTCATTCTGGGTTACTGTTCCACATACATCTTCATGCAGACTTTCATGATTCCCGGAACGATATTCATGTCGTTGCTGGCCGGAGCTCTTTTCGGGGTTTTCAGGGGCCTTCTCTTGGTTGTCTTCAACGCCACAGCTGGAGCTTCTTCCTGCTTCTTTTTGTCCAAGTTAATTGGCAGGCCTTTAGTCAGTTGGTTGTGGCCCGAAAAATTGAGGTTCTTTCAGGCAGAGATCGCAAAGCGCAGGGAAAAGCTGCTCAACTATATGCTTTTCCTGAGGATAACTCCAACTTTGCCAAACCTTTTCATCAACTTGGCATCTCCCATTGTTGACATACCCTTTCACATTTTCTTTCTTGCAACTTTGATTGGTCTTATTCCAGCATCTTATATCACAGTCAGAGCTGGCCTTGCTCTTGGGGATCTCAAGTCAGTCAAGGACCTCTACGATTTTAAAACATTATTTGTGCTTTTCCTTATTGGTTCAGTGATTATATTTCCAACACTTTTGAAGAGAAAGCGAATCTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

282

Amino Acids

31.79

Weight (kDa)

9.26

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 122 - 241 1.7e-15 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 201
AciI CCGC 9 cut(s) 8, 56, 59, 62, 65, 139, 153, 216, 219
AclWI GGATC 1 cut(s) 744
AcoI YGGCCR 1 cut(s) 393
AfeI AGCGCT 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 145, 430
AgsI TTSAA 2 cut(s) 442, 826
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 7 cut(s) 241, 311, 401, 452, 458, 568, 719
AluI AGCT 7 cut(s) 241, 311, 401, 452, 458, 568, 719
Alw21I GWGCWC 1 cut(s) 403
AlwI GGATC 1 cut(s) 744
Aor51HI AGCGCT 1 cut(s) 125
AoxI GGCC 6 cut(s) 187, 393, 421, 494, 515, 721
ApeKI GCWGC 2 cut(s) 155, 568
AspLEI GCGC 2 cut(s) 126, 558
AspS9I GGNCC 5 cut(s) 96, 288, 421, 516, 754
AsuC2I CCSGG 1 cut(s) 369
AvaII GGWCC 3 cut(s) 96, 288, 754
AxyI CCTNAGG 1 cut(s) 590
BanII GRGCYC 2 cut(s) 33, 403
BbsI GAAGAC 2 cut(s) 160, 430
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 2 cut(s) 142, 555
BciT130I CCWGG 1 cut(s) 83
BcnI CCSGG 1 cut(s) 369
BfoI RGCGCY 1 cut(s) 127
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 8 cut(s) 9, 57, 60, 63, 153, 156, 219, 569
BlsI GCNGC 8 cut(s) 10, 58, 61, 64, 154, 157, 220, 570
Bme1390I CCNGG 2 cut(s) 83, 369
Bme18I GGWCC 3 cut(s) 96, 288, 754
BmgT120I GGNCC 5 cut(s) 96, 288, 421, 516, 754
BmiI GGNNCC 3 cut(s) 12, 289, 422
BmrFI CCNGG 2 cut(s) 83, 369
BmsI GCATC 2 cut(s) 641, 707
BpiI GAAGAC 2 cut(s) 160, 430
BplI GAGNNNNNCTC 2 cut(s) 583, 615
BpmI CTGGAG 1 cut(s) 474
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 2 cut(s) 221, 725
BpuMI CCSGG 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 430
Bse118I RCCGGY 1 cut(s) 101
Bse21I CCTNAGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 145, 430
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 46, 581
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 142, 555
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 6 cut(s) 189, 395, 423, 496, 517, 723
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 4 cut(s) 102, 186, 369, 396
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 2 cut(s) 145, 430
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 6 cut(s) 189, 395, 423, 496, 517, 723
Bsp1286I GDGCHC 2 cut(s) 33, 403
Bsp143I GATC 4 cut(s) 259, 277, 546, 736
BspACI CCGC 9 cut(s) 8, 56, 59, 62, 65, 139, 153, 216, 219
BspANI GGCC 6 cut(s) 189, 395, 423, 496, 517, 723
BspCNI CTCAG 2 cut(s) 45, 582
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 3 cut(s) 12, 289, 422
BspPI GGATC 1 cut(s) 744
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 4 cut(s) 259, 277, 546, 736
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 3 cut(s) 230, 332, 712
Bst6I CTCTTC 2 cut(s) 36, 821
BstC8I GCNNGC 6 cut(s) 128, 216, 269, 393, 494, 721
BstDEI CTNAG 2 cut(s) 32, 590
BstF5I GGATG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 2 cut(s) 126, 558
BstKTI GATC 4 cut(s) 262, 280, 549, 739
BstMBI GATC 4 cut(s) 259, 277, 546, 736
BstMWI GCNNNNNNNGC 4 cut(s) 56, 62, 548, 725
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 2 cut(s) 81, 367
BstV1I GCAGC 2 cut(s) 142, 555
BstV2I GAAGAC 2 cut(s) 160, 430
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
Bsu36I CCTNAGG 1 cut(s) 590
BsuRI GGCC 6 cut(s) 189, 395, 423, 496, 517, 723
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 807
Cac8I GCNNGC 6 cut(s) 128, 216, 269, 393, 494, 721
CciI TCATGA 1 cut(s) 360
CfoI GCGC 2 cut(s) 126, 558
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 5 cut(s) 96, 288, 421, 516, 754
CviAII CATG 4 cut(s) 211, 349, 361, 382
DdeI CTNAG 2 cut(s) 32, 590
DpnI GATC 4 cut(s) 261, 279, 548, 738
DpnII GATC 4 cut(s) 259, 277, 546, 736
DraI TTTAAA 1 cut(s) 769
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 36, 821
EarI CTCTTC 2 cut(s) 36, 821
EciI GGCGGA 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 2 cut(s) 33, 403
Eco47I GGWCC 3 cut(s) 96, 288, 754
Eco47III AGCGCT 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 401
Eco81I CCTNAGG 1 cut(s) 590
EcoICRI GAGCTC 1 cut(s) 401
EcoO109I RGGNCCY 3 cut(s) 288, 421, 754
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 2 cut(s) 33, 403
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 4 cut(s) 214, 352, 364, 385
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 1 cut(s) 301
FatI CATG 4 cut(s) 210, 348, 360, 381
FauI CCCGC 2 cut(s) 146, 223
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 8 cut(s) 9, 57, 60, 63, 153, 156, 219, 569
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 2 cut(s) 33, 403
Fsp4HI GCNGC 8 cut(s) 9, 57, 60, 63, 153, 156, 219, 569
GlaI GCGC 2 cut(s) 125, 557
GluI GCNGC 8 cut(s) 9, 57, 60, 63, 153, 156, 219, 569
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 474
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 6 cut(s) 189, 395, 423, 496, 517, 723
HapII CCGG 4 cut(s) 102, 186, 369, 396
HhaI GCGC 2 cut(s) 126, 558
Hin1II CATG 4 cut(s) 214, 352, 364, 385
Hin6I GCGC 2 cut(s) 124, 556
HinP1I GCGC 2 cut(s) 124, 556
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 2 cut(s) 364, 837
HpaII CCGG 4 cut(s) 102, 186, 369, 396
Hpy166II GTNNAC 4 cut(s) 99, 202, 233, 646
Hpy188I TCNGA 3 cut(s) 15, 121, 716
Hpy188III TCNNGA 2 cut(s) 361, 589
Hpy8I GTNNAC 4 cut(s) 99, 202, 233, 646
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 3 cut(s) 230, 332, 712
HpyCH4V TGCA 3 cut(s) 296, 352, 674
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 62, 548, 725
HpyF3I CTNAG 2 cut(s) 32, 590
Hsp92II CATG 4 cut(s) 214, 352, 364, 385
HspAI GCGC 2 cut(s) 124, 556
Kzo9I GATC 4 cut(s) 259, 277, 546, 736
LmnI GCTCC 4 cut(s) 16, 121, 398, 455
Lsp1109I GCAGC 2 cut(s) 142, 555
LweI GCATC 2 cut(s) 641, 707
MaeIII GTNAC 1 cut(s) 326
MalI GATC 4 cut(s) 261, 279, 548, 738
MboI GATC 4 cut(s) 259, 277, 546, 736
MboII GAAGA 8 cut(s) 53, 160, 163, 254, 337, 430, 453, 838
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 2 cut(s) 33, 403
MluCI AATT 3 cut(s) 314, 486, 524
MmeI TCCRAC 3 cut(s) 99, 626, 839
MnlI CCTC 7 cut(s) 61, 139, 143, 193, 522, 585, 767
MseI TTAA 2 cut(s) 485, 768
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 3 cut(s) 141, 155, 452
MspI CCGG 4 cut(s) 102, 186, 369, 396
MspR9I CCNGG 2 cut(s) 83, 369
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 56, 62, 548, 725
NciI CCSGG 1 cut(s) 369
NdeII GATC 4 cut(s) 259, 277, 546, 736
NlaIII CATG 4 cut(s) 214, 352, 364, 385
NlaIV GGNNCC 3 cut(s) 12, 289, 422
PagI TCATGA 1 cut(s) 360
PceI AGGCCT 1 cut(s) 496
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 364, 837
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 8 cut(s) 10, 58, 61, 64, 154, 157, 220, 570
PpuMI RGGWCCY 2 cut(s) 288, 754
Psp124BI GAGCTC 1 cut(s) 403
Psp5II RGGWCCY 2 cut(s) 288, 754
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 3 cut(s) 12, 289, 422
PspPI GGNCC 5 cut(s) 96, 288, 421, 516, 754
PspPPI RGGWCCY 2 cut(s) 288, 754
PsuI RGATCY 1 cut(s) 736
PvuII CAGCTG 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 403
SaqAI TTAA 2 cut(s) 485, 768
SatI GCNGC 8 cut(s) 9, 57, 60, 63, 153, 156, 219, 569
Sau3AI GATC 4 cut(s) 259, 277, 546, 736
Sau96I GGNCC 5 cut(s) 96, 288, 421, 516, 754
ScrFI CCNGG 2 cut(s) 83, 369
SduI GDGCHC 2 cut(s) 33, 403
SfaNI GCATC 2 cut(s) 641, 707
SinI GGWCC 3 cut(s) 96, 288, 754
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 236, 740
SmoI CTYRAG 2 cut(s) 236, 740
Sse9I AATT 3 cut(s) 314, 486, 524
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 9 cut(s) 8, 56, 59, 62, 65, 139, 153, 216, 219
SstI GAGCTC 1 cut(s) 403
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 2 cut(s) 81, 367
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 3 cut(s) 230, 332, 712
TasI AATT 3 cut(s) 314, 486, 524
TauI GCSGC 6 cut(s) 11, 59, 62, 65, 155, 221
TfiI GAWTC 2 cut(s) 364, 837
Tru1I TTAA 2 cut(s) 485, 768
Tru9I TTAA 2 cut(s) 485, 768
TscAI CASTG 1 cut(s) 807
TseI GCWGC 2 cut(s) 155, 568
TspDTI ATGAA 7 cut(s) 54, 163, 307, 337, 349, 370, 610
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 1 cut(s) 807
VpaK11BI GGWCC 3 cut(s) 96, 288, 754
XmiI GTMKAC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.