AT4G09580

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008356
Physical Location & Seq
Reverse (-)
6052352 .. 6054454
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09580.1

Sequence Viewer

Length: 864 bp
ATGGCGGCTCCTCGGAATTTAACAGGTGACGGTGGAGCAAGACAGCTAGTAAAAGACGAAGAAAGCCCCGCAGCTTCATCGGCAGCTAAAGGACTCTTAAACGATGACTCACCGACTGGTAAACGAACCAAATCGGAGAGATTTCCTCTCTCACGGTGGGAATTCGCCGTGTTTTTCACCGTCTTTCTCGTTTTCACCACCGGACTCTTTTGTATTTACCTCACCATGCCTGCCGCTGAATACGGCAAGCTCAAAGTTCCTAGAACTATCTCCGATCTTCGATTGCTCAAAGAGAATCTTGGGTCTTATGCAAGTGAGTACCAAGCACGGTTCATTTTAGGTTACTGTTCGACGTATATCTTTATGCAGACATTTATGATACCTGGAACGATCTTTATGTCATTGCTTGCTGGAGCTCTTTTCGGTGTGGTTAGAGGTTTTGTTCTTGTTGTCCTTAATGCAACTGCTGGAGCATGTTCTTGCTTCTTCTTATCGAAATTGGTCGGTAGGCCATTGGTTAACTGGTTATGGCCTGAAAAGTTGAGGTTTTTCCAAGCTGAGATTGCGAAAAGAAGAGATAGGCTGCTAAACTACATGCTGTTCTTAAGGATAACACCAACACTTCCAAACCTCTTTATCAATTTGTCTTCTCCAATCGTTGACATACCCTTTCACGTCTTCTTTTTGGCGACTCTAGTCGGTCTTATGCCAGCTTCGTACATCACAGTTAGAGCTGGTTTGGCTCTTGGAGATCTCAGATCAGTAAAGGATTTGTATGATTTCAAGACCTTGTCAGTGCTGTTCCTCATTGGATCCATCTCCATATTCCCTGCCCTTCTAAAGAGAAAGAGAGTATATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

287

Amino Acids

32.14

Weight (kDa)

9.74

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 127 - 246 3.5e-15 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 69, 234
AclWI GGATC 2 cut(s) 807, 820
AcsI RAATTY 2 cut(s) 16, 161
AfaI GTAC 2 cut(s) 320, 719
AflII CTTAAG 1 cut(s) 604
AgsI TTSAA 1 cut(s) 784
AjiI CACGTC 1 cut(s) 676
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 8 cut(s) 46, 74, 86, 250, 416, 557, 713, 734
AluI AGCT 8 cut(s) 46, 74, 86, 250, 416, 557, 713, 734
Alw21I GWGCWC 1 cut(s) 418
AlwI GGATC 2 cut(s) 807, 820
AoxI GGCC 2 cut(s) 509, 530
ApeKI GCWGC 3 cut(s) 71, 83, 583
ApoI RAATTY 2 cut(s) 16, 161
AsuHPI GGTGA 5 cut(s) 38, 102, 169, 187, 214
BamHI GGATCC 1 cut(s) 812
BanII GRGCYC 1 cut(s) 418
BbsI GAAGAC 2 cut(s) 639, 670
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 83, 95, 570
BccI CCATC 1 cut(s) 824
BceAI ACGGC 2 cut(s) 152, 259
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 384
BfaI CTAG 3 cut(s) 47, 261, 695
BfrI CTTAAG 1 cut(s) 604
BglII AGATCT 1 cut(s) 751
BisI GCNGC 5 cut(s) 6, 72, 84, 234, 584
BlsI GCNGC 5 cut(s) 7, 73, 85, 235, 585
Bme1390I CCNGG 1 cut(s) 384
BmgBI CACGTC 1 cut(s) 676
BmiI GGNNCC 2 cut(s) 9, 814
BmrFI CCNGG 1 cut(s) 384
BoxI GACNNNNGTC 1 cut(s) 695
BpiI GAAGAC 2 cut(s) 639, 670
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BpmI CTGGAG 2 cut(s) 432, 489
BsaJI CCNNGG 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 121, 527
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 2 cut(s) 549, 769
BseNI ACTGG 2 cut(s) 121, 527
BseXI GCAGC 3 cut(s) 83, 95, 570
BshFI GGCC 2 cut(s) 511, 532
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 201
BsnI GGCC 2 cut(s) 511, 532
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 5 cut(s) 274, 390, 751, 758, 812
BspACI CCGC 3 cut(s) 5, 69, 234
BspANI GGCC 2 cut(s) 511, 532
BspCNI CTCAG 2 cut(s) 550, 768
BspLI GGNNCC 2 cut(s) 9, 814
BspPI GGATC 2 cut(s) 807, 820
BspTI CTTAAG 1 cut(s) 604
BsrDI GCAATG 1 cut(s) 401
BsrI ACTGG 2 cut(s) 121, 527
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 5 cut(s) 274, 390, 751, 758, 812
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 6 cut(s) 32, 156, 181, 330, 347, 727
Bst6I CTCTTC 1 cut(s) 568
BstAFI CTTAAG 1 cut(s) 604
BstC8I GCNNGC 4 cut(s) 231, 248, 408, 711
BstDEI CTNAG 2 cut(s) 558, 755
BstKTI GATC 5 cut(s) 277, 393, 754, 761, 815
BstMBI GATC 5 cut(s) 274, 390, 751, 758, 812
BstMWI GCNNNNNNNGC 3 cut(s) 80, 563, 740
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 2 cut(s) 477, 598
BstPAI GACNNNNGTC 1 cut(s) 695
BstSCI CCNGG 1 cut(s) 382
BstV1I GCAGC 3 cut(s) 83, 95, 570
BstV2I GAAGAC 2 cut(s) 639, 670
BstX2I RGATCY 2 cut(s) 751, 812
BstYI RGATCY 2 cut(s) 751, 812
BsuRI GGCC 2 cut(s) 511, 532
BtrI CACGTC 1 cut(s) 676
BtsIMutI CAGTG 1 cut(s) 801
Cac8I GCNNGC 4 cut(s) 231, 248, 408, 711
Csp6I GTAC 2 cut(s) 319, 718
CviAII CATG 3 cut(s) 226, 474, 595
CviQI GTAC 2 cut(s) 319, 718
DdeI CTNAG 2 cut(s) 558, 755
DpnI GATC 5 cut(s) 276, 392, 753, 760, 814
DpnII GATC 5 cut(s) 274, 390, 751, 758, 812
Eam1104I CTCTTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 568
Ecl136II GAGCTC 1 cut(s) 416
Eco24I GRGCYC 1 cut(s) 418
Eco53kI GAGCTC 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 418
FaeI CATG 3 cut(s) 229, 477, 598
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 3 cut(s) 225, 473, 594
FauI CCCGC 1 cut(s) 76
Fnu4HI GCNGC 5 cut(s) 6, 72, 84, 234, 584
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 5 cut(s) 6, 72, 84, 234, 584
FspBI CTAG 3 cut(s) 47, 261, 695
GluI GCNGC 5 cut(s) 6, 72, 84, 234, 584
GsuI CTGGAG 2 cut(s) 432, 489
HaeIII GGCC 2 cut(s) 511, 532
HapII CCGG 1 cut(s) 201
Hin1II CATG 3 cut(s) 229, 477, 598
HincII GTYRAC 2 cut(s) 520, 661
HindII GTYRAC 2 cut(s) 520, 661
HinfI GANTC 5 cut(s) 93, 107, 204, 295, 691
HpaI GTTAAC 1 cut(s) 520
HpaII CCGG 1 cut(s) 201
HphI GGTGA 5 cut(s) 38, 102, 169, 187, 214
Hpy166II GTNNAC 3 cut(s) 122, 520, 661
Hpy188I TCNGA 4 cut(s) 15, 136, 274, 758
Hpy188III TCNNGA 1 cut(s) 784
Hpy8I GTNNAC 3 cut(s) 122, 520, 661
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 1 cut(s) 845
HpyCH4III ACNGT 6 cut(s) 32, 156, 181, 330, 347, 727
HpyCH4IV ACGT 2 cut(s) 353, 675
HpyCH4V TGCA 3 cut(s) 311, 367, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 563, 740
HpyF3I CTNAG 2 cut(s) 558, 755
HpySE526I ACGT 2 cut(s) 353, 675
Hsp92II CATG 3 cut(s) 229, 477, 598
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 5 cut(s) 274, 390, 751, 758, 812
LmnI GCTCC 4 cut(s) 13, 35, 413, 470
Lsp1109I GCAGC 3 cut(s) 83, 95, 570
MaeI CTAG 3 cut(s) 47, 261, 695
MaeII ACGT 2 cut(s) 353, 675
MaeIII GTNAC 2 cut(s) 26, 341
MalI GATC 5 cut(s) 276, 392, 753, 760, 814
MboI GATC 5 cut(s) 274, 390, 751, 758, 812
MboII GAAGA 6 cut(s) 71, 269, 478, 585, 639, 670
MflI RGATCY 2 cut(s) 751, 812
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 4 cut(s) 16, 161, 497, 640
MlyI GAGTC 4 cut(s) 87, 101, 198, 685
MnlI CCTC 7 cut(s) 21, 156, 230, 428, 537, 641, 815
MseI TTAA 5 cut(s) 20, 98, 456, 519, 605
MspA1I CMGCKG 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 604
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 3 cut(s) 80, 563, 740
NdeII GATC 5 cut(s) 274, 390, 751, 758, 812
NlaIII CATG 3 cut(s) 229, 477, 598
NlaIV GGNNCC 2 cut(s) 9, 814
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 2 cut(s) 477, 598
PfeI GAWTC 1 cut(s) 295
PflFI GACNNNGTC 1 cut(s) 790
PkrI GCNGC 5 cut(s) 7, 73, 85, 235, 585
PleI GAGTC 4 cut(s) 87, 101, 198, 685
PpsI GAGTC 4 cut(s) 87, 101, 198, 685
PshAI GACNNNNGTC 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 9, 814
PsuI RGATCY 2 cut(s) 751, 812
PsyI GACNNNGTC 1 cut(s) 790
RsaI GTAC 2 cut(s) 320, 719
RsaNI GTAC 2 cut(s) 319, 718
SacI GAGCTC 1 cut(s) 418
SaqAI TTAA 5 cut(s) 20, 98, 456, 519, 605
SatI GCNGC 5 cut(s) 6, 72, 84, 234, 584
Sau3AI GATC 5 cut(s) 274, 390, 751, 758, 812
SchI GAGTC 4 cut(s) 87, 101, 198, 685
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 1 cut(s) 418
SmlI CTYRAG 1 cut(s) 604
SmoI CTYRAG 1 cut(s) 604
Sse9I AATT 4 cut(s) 16, 161, 497, 640
SsiI CCGC 3 cut(s) 5, 69, 234
SspMI CTAG 3 cut(s) 47, 261, 695
SstI GAGCTC 1 cut(s) 418
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 6 cut(s) 32, 156, 181, 330, 347, 727
TaiI ACGT 2 cut(s) 356, 678
TaqI TCGA 3 cut(s) 280, 350, 494
TaqII GACCGA 1 cut(s) 689
TasI AATT 4 cut(s) 16, 161, 497, 640
TauI GCSGC 2 cut(s) 8, 236
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 5 cut(s) 20, 98, 456, 519, 605
Tru9I TTAA 5 cut(s) 20, 98, 456, 519, 605
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 3 cut(s) 71, 83, 583
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 66, 322
TspRI CASTG 1 cut(s) 801
Tth111I GACNNNGTC 1 cut(s) 790
Vha464I CTTAAG 1 cut(s) 604
XapI RAATTY 2 cut(s) 16, 161
XceI RCATGY 2 cut(s) 477, 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 519
XspI CTAG 3 cut(s) 47, 261, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.