Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008356

Physical Location & Seq

Genomic Coordinates Reverse (-)

3938459 .. 3943809

Gene Structure 5351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGGCTCCGAGAAATCTGGCGGGGGACGCCGGGAGGCTGCCTGTGGACGAGGAGAATCCCAAGGAGGACGATTGGTCCACCGGCAAGAGGCCCAAGTCCGATAGGTTTCCGCTGTCGCGGTGGGAATTCGCAGCGGCACTCGGCGTTTTCTTGGTCTTCTCTACCGGTCTCTGCTGCGTCTACTTGACCATGCCTGCCGCCGAGTACGGTAAACTCAAGCTGCCGCGCTCCGTCGCCGATCTTCGCTTGCTCAAAGACAATCTGGCAACATATGCCAATGATTATCCGGCACAATTTATTCTGGGTTACTGCTCTACTTACATCTTCATGCAGACTTTTATGATTCCTGGGACAATTTTTATGTCATTGCTAGCTGGAGCTCTTTTTGGCGTAATCAGAGGCCTTATCTTGGTTGTCTGCAATGCTACAGCTGGAGCGTCATCCTGCTTCTTTTTGTCTAAGTTAATTGGAAGGCCTTTGGTTAGTTGGTTGTGGCCAGAAAGGTTGAGATTTTTTCAGGCAGAGATTGCAAAGCGTAGGGAAAAGCTGCTAAATTACATGCTTTTTCTTAGGATAACTCCAACCTTGCCAAACCTTTTCATCAACTTGGCATCTCCAATTGTTGATATACCGTTTCATATTTTCTTTCTGGCGACTTTTGTTGGTCTTATTCCAGCATCTTATATCACAGTCAGGGCTGGCCTTGCTCTGGGAGATCTCAAGTCCGTCAAGATCGATCTCTATGATTTTAAAACTCTGTTTGTGCTTTTCCTCATTGGTTCTGTGATTATACTTCCAACCGTTTTGAAGAGGAAGCGAATCTATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

278

Amino Acids

31.08

Weight (kDa)

9.45

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71940 AT4G09580
fragaria_vesca	FvH4_2g11950 FvH4_2g11950 FvH4_2g11950
malus_domestica	MD05G1041900.v1.1 MD10G1048400.v1.1
prunus_persica	Prupe.8G057800_v2.0.a1
pyrus_communis	pycom05g03460 pycom10g03440
rosa_chinensis	RchiOBHm_Chr6g0272001
rosa_laevigata	RLG00000013710
rosa_multiflora	Rmu_sc0004379.1_g000007
rosa_roxburghii	Rroxscaffold_173G00434980 Rroxscaffold_7G00196800
rosa_rugosa	Rorug06G0064500 Rorug06G0064500 Rorug06G0064500
rosa_samantha	Rh6BG185100 Rh6CG183300 Rh6DG174800
rosa_wichuraiana	Rw6G015620 Rw6G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	2 cut(s)	121, 229
AciI	CCGC	7 cut(s)	5, 23, 113, 121, 137, 201, 227
AcoI	YGGCCR	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	90, 412, 712
AgeI	ACCGGT	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	811
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	5 cut(s)	223, 377, 383, 434, 550
AluI	AGCT	5 cut(s)	223, 377, 383, 434, 550
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	5 cut(s)	92, 403, 476, 497, 703
ApeKI	GCWGC	5 cut(s)	40, 134, 177, 223, 550
ApoI	RAATTY	1 cut(s)	128
AsiGI	ACCGGT	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	78, 93
AsuC2I	CCSGG	1 cut(s)	34
AsuNHI	GCTAGC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	5 cut(s)	27, 146, 164, 210, 537
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	429
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	9 cut(s)	6, 41, 135, 138, 178, 201, 224, 227, 551
BlsI	GCNGC	9 cut(s)	7, 42, 136, 139, 179, 202, 225, 228, 552
Bme1390I	CCNGG	2 cut(s)	34, 351
Bme18I	GGWCC	1 cut(s)	78
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	78, 93
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	34, 351
BmsI	GCATC	2 cut(s)	623, 689
BmtI	GCTAGC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	2 cut(s)	399, 456
BpuEI	CTTGAG	2 cut(s)	203, 707
BpuMI	CCSGG	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	63, 350
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 412, 712
Bse118I	RCCGGY	2 cut(s)	83, 167
Bse3DI	GCAATG	2 cut(s)	368, 430
BseBI	CCWGG	1 cut(s)	351
BseCI	ATCGAT	1 cut(s)	738
BseDI	CCNNGG	2 cut(s)	63, 350
BseGI	GGATG	1 cut(s)	443
BseLI	CCNNNNNNNGG	3 cut(s)	90, 412, 712
BseMI	GCAATG	2 cut(s)	368, 430
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	5 cut(s)	27, 146, 164, 210, 537
Bsh1236I	CGCG	2 cut(s)	121, 229
BshFI	GGCC	5 cut(s)	94, 405, 478, 499, 705
BshTI	ACCGGT	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	738
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	4 cut(s)	33, 84, 168, 290
BslFI	GGGAC	2 cut(s)	41, 367
BslI	CCNNNNNNNGG	3 cut(s)	90, 412, 712
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	2 cut(s)	41, 367
BsnI	GGCC	5 cut(s)	94, 405, 478, 499, 705
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	4 cut(s)	241, 718, 735, 739
BspACI	CCGC	7 cut(s)	5, 23, 113, 121, 137, 201, 227
BspANI	GGCC	5 cut(s)	94, 405, 478, 499, 705
BspDI	ATCGAT	1 cut(s)	738
BspFNI	CGCG	2 cut(s)	121, 229
BspLI	GGNNCC	1 cut(s)	9
BspOI	GCTAGC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	368, 430
BsrFI	RCCGGY	2 cut(s)	83, 167
BssAI	RCCGGY	2 cut(s)	83, 167
BssECI	CCNNGG	2 cut(s)	63, 350
BssMI	GATC	4 cut(s)	241, 718, 735, 739
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	4 cut(s)	212, 636, 694, 805
Bst6I	CTCTTC	1 cut(s)	806
BstACI	GRCGYC	1 cut(s)	30
BstAPI	GCANNNNNTGC	2 cut(s)	275, 530
BstC8I	GCNNGC	4 cut(s)	198, 251, 375, 703
BstDEI	CTNAG	2 cut(s)	462, 572
BstF5I	GGATG	1 cut(s)	443
BstFNI	CGCG	2 cut(s)	121, 229
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	4 cut(s)	244, 721, 738, 742
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	4 cut(s)	241, 718, 735, 739
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 275, 530, 707
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	2 cut(s)	32, 349
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	2 cut(s)	121, 229
BstV1I	GCAGC	5 cut(s)	27, 146, 164, 210, 537
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
Bsu15I	ATCGAT	1 cut(s)	738
BsuRI	GGCC	5 cut(s)	94, 405, 478, 499, 705
BsuTUI	ATCGAT	1 cut(s)	738
BtsCI	GGATG	1 cut(s)	443
Cac8I	GCNNGC	4 cut(s)	198, 251, 375, 703
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	2 cut(s)	83, 167
Cfr13I	GGNCC	2 cut(s)	78, 93
ClaI	ATCGAT	1 cut(s)	738
CseI	GACGC	3 cut(s)	38, 169, 429
Csp6I	GTAC	1 cut(s)	208
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	3 cut(s)	193, 331, 562
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	462, 572
DpnI	GATC	4 cut(s)	243, 720, 737, 741
DpnII	GATC	4 cut(s)	241, 718, 735, 739
DraI	TTTAAA	1 cut(s)	754
DriI	GACNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	497
Eam1104I	CTCTTC	1 cut(s)	806
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	806
Ecl136II	GAGCTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	63
Eco147I	AGGCCT	2 cut(s)	405, 478
Eco24I	GRGCYC	1 cut(s)	385
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	196, 334, 565
FaqI	GGGAC	2 cut(s)	41, 367
FatI	CATG	3 cut(s)	192, 330, 561
FauI	CCCGC	1 cut(s)	16
FauNDI	CATATG	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	9 cut(s)	6, 41, 135, 138, 178, 201, 224, 227, 551
FokI	GGATG	1 cut(s)	430
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	9 cut(s)	6, 41, 135, 138, 178, 201, 224, 227, 551
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	9 cut(s)	6, 41, 135, 138, 178, 201, 224, 227, 551
GsuI	CTGGAG	2 cut(s)	399, 456
HaeIII	GGCC	5 cut(s)	94, 405, 478, 499, 705
HapII	CCGG	4 cut(s)	33, 84, 168, 290
HgaI	GACGC	3 cut(s)	38, 169, 429
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	196, 334, 565
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	58, 346, 822
HpaII	CCGG	4 cut(s)	33, 84, 168, 290
Hpy166II	GTNNAC	4 cut(s)	49, 81, 184, 215
Hpy188I	TCNGA	3 cut(s)	12, 103, 401
Hpy188III	TCNNGA	1 cut(s)	733
Hpy8I	GTNNAC	4 cut(s)	49, 81, 184, 215
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	468
HpyCH4III	ACNGT	4 cut(s)	212, 636, 694, 805
HpyCH4V	TGCA	3 cut(s)	334, 423, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 275, 530, 707
HpyF3I	CTNAG	2 cut(s)	462, 572
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	196, 334, 565
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	241, 718, 735, 739
LmnI	GCTCC	4 cut(s)	13, 236, 380, 437
Lsp1109I	GCAGC	5 cut(s)	27, 146, 164, 210, 537
LweI	GCATC	2 cut(s)	623, 689
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	4 cut(s)	243, 720, 737, 741
MboI	GATC	4 cut(s)	241, 718, 735, 739
MboII	GAAGA	4 cut(s)	151, 236, 319, 823
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	499
MluCI	AATT	6 cut(s)	128, 296, 357, 468, 556, 621
MluNI	TGGCCA	1 cut(s)	499
MmeI	TCCRAC	2 cut(s)	608, 824
MnlI	CCTC	7 cut(s)	30, 46, 61, 84, 395, 785, 807
Mox20I	TGGCCA	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	499
MseI	TTAA	2 cut(s)	467, 753
MslI	CAYNNNNRTG	1 cut(s)	329
Msp20I	TGGCCA	1 cut(s)	499
MspA1I	CMGCKG	3 cut(s)	115, 137, 434
MspI	CCGG	4 cut(s)	33, 84, 168, 290
MspR9I	CCNGG	2 cut(s)	34, 351
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	2 cut(s)	121, 229
MwoI	GCNNNNNNNGC	4 cut(s)	29, 275, 530, 707
NciI	CCSGG	1 cut(s)	34
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	4 cut(s)	241, 718, 735, 739
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	196, 334, 565
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	2 cut(s)	123, 229
NspI	RCATGY	1 cut(s)	565
PceI	AGGCCT	2 cut(s)	405, 478
PfeI	GAWTC	3 cut(s)	58, 346, 822
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	9 cut(s)	7, 42, 136, 139, 179, 202, 225, 228, 552
Psp124BI	GAGCTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	78, 93
PsuI	RGATCY	1 cut(s)	718
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	467, 753
SatI	GCNGC	9 cut(s)	6, 41, 135, 138, 178, 201, 224, 227, 551
Sau3AI	GATC	4 cut(s)	241, 718, 735, 739
Sau96I	GGNCC	2 cut(s)	78, 93
ScrFI	CCNGG	2 cut(s)	34, 351
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	9 cut(s)	110, 225, 379, 385, 436, 509, 552, 590, 600
SfaNI	GCATC	2 cut(s)	623, 689
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	2 cut(s)	218, 722
SmoI	CTYRAG	2 cut(s)	218, 722
Sse9I	AATT	6 cut(s)	128, 296, 357, 468, 556, 621
SseBI	AGGCCT	2 cut(s)	405, 478
SsiI	CCGC	7 cut(s)	5, 23, 113, 121, 137, 201, 227
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	385
StuI	AGGCCT	2 cut(s)	405, 478
StyD4I	CCNGG	2 cut(s)	32, 349
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	4 cut(s)	212, 636, 694, 805
TaqI	TCGA	1 cut(s)	738
TasI	AATT	6 cut(s)	128, 296, 357, 468, 556, 621
TauI	GCSGC	4 cut(s)	8, 140, 203, 229
TfiI	GAWTC	3 cut(s)	58, 346, 822
Tru1I	TTAA	2 cut(s)	467, 753
Tru9I	TTAA	2 cut(s)	467, 753
TseI	GCWGC	5 cut(s)	40, 134, 177, 223, 550
TspDTI	ATGAA	3 cut(s)	319, 592, 629
TspGWI	ACGGA	2 cut(s)	223, 718
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	565
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.