Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008356

Physical Location & Seq

Genomic Coordinates Reverse (-)

33945254 .. 33950067

Gene Structure 4814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG185100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGATGGCGGCTCCGAGAAATCTGGTGGGGCTCAGGGATGAAGAGAATGCCAAGGCGGCGGCGGAGGACGACCAGCAGGACGATGATTGGTCCACCGGCAAGAAGCCCAAGTCGGAGCGCTTGCCCCTCTCCCGCTGGGAGGTCGCCGCTGCTCTCTCCGTCTTCTTCATATTCTCCTCCGGCCTTTTCTGTGTCTACTTGACCATGCCCGCCGCCGATTACGGTAAACTCAAGCTTCCACGCACCATTGCCGATCTTCGCTTGCTCAAAGATCATCTTGGGACCTATGCAAACGATTATCCAGCTCAATTCATTCTGGGTTACTGTTCCACATACATCTTCATGCAGACTTTCATGATTCCCGGAACGATATTCATGTCATTGCTGGCCGGAGCTCTTTTCGGGGTTTTCAGGGGCCTTCTCTTGGTTGTCTTCAACGCCACAGCTGGAGCTTCTTCCTGCTTCTTTTTGTCCAAGTTAATTGGCAGGCCTTTAGTCAGTTGGTTGTGGCCCGAAAAATTGAGATTCTTTCAGGCAGAGATCGCAAAGCGCAGGGAAAAGCTGCTCAACTATATGCTTTTCCTGAGGATAACTCCTACTTTGCCAAACCTTTTCATCAACCTGGCATCTCCCATTGTTGACATACCCTTTCACATTTTCTTTCTTGCAACTTTGATTGGTCTTATTCCAGCATCTTATATCACCGTCAGAGCTGGCCTTGCTCTTGGGGATCTCAAGTCAGTCAAGGACCTCTACGATTTTAAAACATTATTTGTGCTTTTCCTTATTGGTTCAGTGATTATATTTCCAACACTTTTGAAGAGAAAGCGAATCTATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

280

Amino Acids

31.59

Weight (kDa)

9.36

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VTT_dom	PF09335	120 - 239	1.7e-15	VTT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71940 AT4G09580
fragaria_vesca	FvH4_2g11950 FvH4_2g11950 FvH4_2g11950
malus_domestica	MD05G1041900.v1.1 MD10G1048400.v1.1
prunus_persica	Prupe.8G057800_v2.0.a1
pyrus_communis	pycom05g03460 pycom10g03440
rosa_chinensis	RchiOBHm_Chr6g0272001
rosa_laevigata	RLG00000013710
rosa_multiflora	Rmu_sc0004379.1_g000007
rosa_roxburghii	Rroxscaffold_173G00434980 Rroxscaffold_7G00196800
rosa_rugosa	Rorug06G0064500 Rorug06G0064500 Rorug06G0064500
rosa_samantha	Rh6BG185100 Rh6CG183300 Rh6DG174800
rosa_wichuraiana	Rw6G015620 Rw6G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	8 cut(s)	8, 56, 59, 62, 133, 147, 210, 213
AclWI	GGATC	1 cut(s)	738
AcoI	YGGCCR	1 cut(s)	387
AfeI	AGCGCT	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	139, 424
AgsI	TTSAA	2 cut(s)	436, 820
AjnI	CCWGG	1 cut(s)	621
AluBI	AGCT	7 cut(s)	235, 305, 395, 446, 452, 562, 713
AluI	AGCT	7 cut(s)	235, 305, 395, 446, 452, 562, 713
Alw21I	GWGCWC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	738
Aor51HI	AGCGCT	1 cut(s)	119
AoxI	GGCC	6 cut(s)	181, 387, 415, 488, 509, 715
ApeKI	GCWGC	2 cut(s)	149, 562
AspLEI	GCGC	2 cut(s)	120, 552
AspS9I	GGNCC	5 cut(s)	90, 282, 415, 510, 748
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	694
AvaII	GGWCC	3 cut(s)	90, 282, 748
AxyI	CCTNAGG	1 cut(s)	584
BanII	GRGCYC	2 cut(s)	33, 397
BbsI	GAAGAC	2 cut(s)	154, 424
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	136, 549
BciT130I	CCWGG	1 cut(s)	623
BcnI	CCSGG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	7 cut(s)	9, 57, 60, 147, 150, 213, 563
BlsI	GCNGC	7 cut(s)	10, 58, 61, 148, 151, 214, 564
Bme1390I	CCNGG	2 cut(s)	363, 623
Bme18I	GGWCC	3 cut(s)	90, 282, 748
BmgT120I	GGNCC	5 cut(s)	90, 282, 415, 510, 748
BmiI	GGNNCC	3 cut(s)	12, 283, 416
BmrFI	CCNGG	2 cut(s)	363, 623
BmsI	GCATC	2 cut(s)	635, 701
BpiI	GAAGAC	2 cut(s)	154, 424
BplI	GAGNNNNNCTC	2 cut(s)	577, 609
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	2 cut(s)	215, 719
BpuMI	CCSGG	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 424
Bse118I	RCCGGY	1 cut(s)	95
Bse21I	CCTNAGG	1 cut(s)	584
Bse3DI	GCAATG	2 cut(s)	246, 380
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	139, 424
BseMI	GCAATG	2 cut(s)	246, 380
BseMII	CTCAG	2 cut(s)	46, 575
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	136, 549
BseYI	CCCAGC	1 cut(s)	135
BshFI	GGCC	6 cut(s)	183, 389, 417, 490, 511, 717
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	4 cut(s)	96, 180, 363, 390
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	2 cut(s)	139, 424
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	6 cut(s)	183, 389, 417, 490, 511, 717
Bsp1286I	GDGCHC	2 cut(s)	33, 397
Bsp143I	GATC	4 cut(s)	253, 271, 540, 730
BspACI	CCGC	8 cut(s)	8, 56, 59, 62, 133, 147, 210, 213
BspANI	GGCC	6 cut(s)	183, 389, 417, 490, 511, 717
BspCNI	CTCAG	2 cut(s)	45, 576
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	3 cut(s)	12, 283, 416
BspPI	GGATC	1 cut(s)	738
BsrDI	GCAATG	2 cut(s)	246, 380
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	4 cut(s)	253, 271, 540, 730
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	3 cut(s)	224, 326, 706
Bst6I	CTCTTC	2 cut(s)	36, 815
BstC8I	GCNNGC	6 cut(s)	122, 210, 263, 387, 488, 715
BstDEI	CTNAG	2 cut(s)	32, 584
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	2 cut(s)	120, 552
BstKTI	GATC	4 cut(s)	256, 274, 543, 733
BstMBI	GATC	4 cut(s)	253, 271, 540, 730
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 542, 719
BstNI	CCWGG	1 cut(s)	623
BstSCI	CCNGG	2 cut(s)	361, 621
BstV1I	GCAGC	2 cut(s)	136, 549
BstV2I	GAAGAC	2 cut(s)	154, 424
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
Bsu36I	CCTNAGG	1 cut(s)	584
BsuRI	GGCC	6 cut(s)	183, 389, 417, 490, 511, 717
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	801
Cac8I	GCNNGC	6 cut(s)	122, 210, 263, 387, 488, 715
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	2 cut(s)	120, 552
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	5 cut(s)	90, 282, 415, 510, 748
CviAII	CATG	4 cut(s)	205, 343, 355, 376
DdeI	CTNAG	2 cut(s)	32, 584
DpnI	GATC	4 cut(s)	255, 273, 542, 732
DpnII	GATC	4 cut(s)	253, 271, 540, 730
DraI	TTTAAA	1 cut(s)	763
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	36, 815
EarI	CTCTTC	2 cut(s)	36, 815
EciI	GGCGGA	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	490
Eco24I	GRGCYC	2 cut(s)	33, 397
Eco47I	GGWCC	3 cut(s)	90, 282, 748
Eco47III	AGCGCT	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	395
Eco81I	CCTNAGG	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	395
EcoO109I	RGGNCCY	3 cut(s)	282, 415, 748
EcoRII	CCWGG	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	2 cut(s)	33, 397
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	208, 346, 358, 379
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	4 cut(s)	204, 342, 354, 375
FauI	CCCGC	2 cut(s)	140, 217
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	7 cut(s)	9, 57, 60, 147, 150, 213, 563
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	2 cut(s)	33, 397
Fsp4HI	GCNGC	7 cut(s)	9, 57, 60, 147, 150, 213, 563
GlaI	GCGC	2 cut(s)	119, 551
GluI	GCNGC	7 cut(s)	9, 57, 60, 147, 150, 213, 563
GsaI	CCCAGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	6 cut(s)	183, 389, 417, 490, 511, 717
HapII	CCGG	4 cut(s)	96, 180, 363, 390
HhaI	GCGC	2 cut(s)	120, 552
Hin1II	CATG	4 cut(s)	208, 346, 358, 379
Hin6I	GCGC	2 cut(s)	118, 550
HinP1I	GCGC	2 cut(s)	118, 550
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	3 cut(s)	358, 525, 831
HpaII	CCGG	4 cut(s)	96, 180, 363, 390
HphI	GGTGA	1 cut(s)	694
Hpy166II	GTNNAC	4 cut(s)	93, 196, 227, 640
Hpy188I	TCNGA	3 cut(s)	15, 115, 710
Hpy188III	TCNNGA	2 cut(s)	355, 583
Hpy8I	GTNNAC	4 cut(s)	93, 196, 227, 640
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	3 cut(s)	224, 326, 706
HpyCH4V	TGCA	3 cut(s)	290, 346, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 542, 719
HpyF3I	CTNAG	2 cut(s)	32, 584
Hsp92II	CATG	4 cut(s)	208, 346, 358, 379
HspAI	GCGC	2 cut(s)	118, 550
Kzo9I	GATC	4 cut(s)	253, 271, 540, 730
LmnI	GCTCC	4 cut(s)	16, 115, 392, 449
Lsp1109I	GCAGC	2 cut(s)	136, 549
LweI	GCATC	2 cut(s)	635, 701
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	4 cut(s)	255, 273, 542, 732
MboI	GATC	4 cut(s)	253, 271, 540, 730
MboII	GAAGA	8 cut(s)	53, 154, 157, 248, 331, 424, 447, 832
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	2 cut(s)	33, 397
MluCI	AATT	3 cut(s)	308, 480, 518
MmeI	TCCRAC	2 cut(s)	93, 833
MnlI	CCTC	6 cut(s)	58, 133, 137, 187, 579, 761
MseI	TTAA	2 cut(s)	479, 762
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	3 cut(s)	135, 149, 446
MspI	CCGG	4 cut(s)	96, 180, 363, 390
MspR9I	CCNGG	2 cut(s)	363, 623
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	623
MwoI	GCNNNNNNNGC	3 cut(s)	56, 542, 719
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	4 cut(s)	253, 271, 540, 730
NlaIII	CATG	4 cut(s)	208, 346, 358, 379
NlaIV	GGNNCC	3 cut(s)	12, 283, 416
PagI	TCATGA	1 cut(s)	354
PceI	AGGCCT	1 cut(s)	490
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	358, 525, 831
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	7 cut(s)	10, 58, 61, 148, 151, 214, 564
PpuMI	RGGWCCY	2 cut(s)	282, 748
Psp124BI	GAGCTC	1 cut(s)	397
Psp5II	RGGWCCY	2 cut(s)	282, 748
Psp6I	CCWGG	1 cut(s)	621
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	3 cut(s)	12, 283, 416
PspPI	GGNCC	5 cut(s)	90, 282, 415, 510, 748
PspPPI	RGGWCCY	2 cut(s)	282, 748
PsuI	RGATCY	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	446
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	397
SaqAI	TTAA	2 cut(s)	479, 762
SatI	GCNGC	7 cut(s)	9, 57, 60, 147, 150, 213, 563
Sau3AI	GATC	4 cut(s)	253, 271, 540, 730
Sau96I	GGNCC	5 cut(s)	90, 282, 415, 510, 748
ScrFI	CCNGG	2 cut(s)	363, 623
SduI	GDGCHC	2 cut(s)	33, 397
SfaNI	GCATC	2 cut(s)	635, 701
SinI	GGWCC	3 cut(s)	90, 282, 748
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	230, 734
SmoI	CTYRAG	2 cut(s)	230, 734
Sse9I	AATT	3 cut(s)	308, 480, 518
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	8 cut(s)	8, 56, 59, 62, 133, 147, 210, 213
SstI	GAGCTC	1 cut(s)	397
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	2 cut(s)	361, 621
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	224, 326, 706
TasI	AATT	3 cut(s)	308, 480, 518
TauI	GCSGC	5 cut(s)	11, 59, 62, 149, 215
TfiI	GAWTC	3 cut(s)	358, 525, 831
Tru1I	TTAA	2 cut(s)	479, 762
Tru9I	TTAA	2 cut(s)	479, 762
TscAI	CASTG	1 cut(s)	801
TseI	GCWGC	2 cut(s)	149, 562
TspDTI	ATGAA	7 cut(s)	54, 157, 301, 331, 343, 364, 604
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	801
VpaK11BI	GGWCC	3 cut(s)	90, 282, 748
XmiI	GTMKAC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.