AT1G72330

alanine aminotransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
27233418 .. 27236822
3405 bp
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UTR
Exon/CDS
Intron
AT1G72330.3

Sequence Viewer

Length: 1623 bp
ATGCGGAGATTCTTGATTAACCAAGCTAAAGGTCTCGTCGACCATTCTCGTCGTCAACATCACCACAAAAGTCCAAGCTTTCTCTCTCCTCAACCTCGTCCCCTTGCTTCTTCTCCTCCTGCTCTGTCTCGTTTCTTCTCTTCTACTTCGGAGATGTCTGCTTCTGATTCCACTTCTTCTCTTCCCGTTACTCTTGACTCCATCAATCCCAAGGTTCTGAAATGTGAGTATGCTGTTCGAGGAGAAATTGTCAACATTGCTCAGAAGTTACAAGAAGACTTGAAGACTAATAAGGATGCTTATCCCTTTGATGAGATAATCTATTGCAACATTGGGAATCCTCAATCTCTTGGTCAGCTGCCTATAAAGTTCTTCCGTGAGGTTCTCGCATTGTGTGACCACGCAAGTCTTTTGGATGAGTCTGAAACCCATGGTTTGTTCAGTACCGATTCAATTGACCGAGCATGGAGGATTTTGGACCATATTCCCGGAAGAGCAACTGGGGCTTACAGTCATAGCCAGGGTATCAAGGGTTTACGTGATGTAATTGCAGCTGGAATCGAAGCACGTGATGGTTTCCCTGCTGATCCAAATGATATTTTCTTGACTGATGGTGCAAGTCCAGCGGTTCACATGATGATGCAACTTCTCTTGAGCTCAGAGAAAGATGGTATTCTTTCCCCGATTCCTCAGTATCCATTGTACTCGGCTTCAATTGCCCTTCATGGTGGATCTTTGGTTCCGTACTATCTTGATGAAGCAACAGGATGGGGACTGGAAATATCTGACCTTAAGAAGCAACTAGAGGAAGCTAGGTCCAAGGGCATCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCAACTGGGCAGGTTCTTGCGGAAGAAAACCAGCGTGACATTGTTAATTTCTGCAAGCAAGAGGGTTTGGTTCTTTTAGCTGATGAAGTCTACCAAGAAAATGTTTACGTCCCTGACAAAAAGTTCCATTCTTTCAAGAAAGTGGCTCGGTCTTTGGGCTATGGAGAAAAAGATATCTCGTTAGTCTCGTTCCAATCAGTCTCCAAAGGATATTATGGAGAATGTGGAAAAAGAGGAGGTTACATGGAGGTTACTGGATTCACTTCTGATGTAAGAGAACAGATATACAAAATGGCTTCTGTGAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTGTCATGAGCCCACCCAAGCCTGGTGATGACTCATATGACTCATACATGGCAGAAAGAGATGGAATTCTCTCATCCATGGCTAAACGTGCAAAGACTTTGGAAGACGCTCTCAACAGTTTAGAAGGTGTTACATGTAACAGAGCCGAAGGAGCAATGTATCTCTTCCCGCGAATTAACCTTCCTCAAAAGGCTATCGAAGCTGCTGAGGCTGAAAAAACTGCACCAGATGCGTTCTACTGCAAACGCCTTCTCAATGCTACTGGTGTAGTTGTAGTCCCTGGTTCTGGCTTTGGACAGGTTCCTGGAACATGGCACTTTAGATGCACAATACTTCCACAAGAAGACAAGATTCCAGCGATAGTGAATCGTCTGACAGAGTTCCACAAGAGCTTCATGGACGAGTTCCGCAACTAA

Protein Analysis

540

Amino Acids

59.51

Weight (kDa)

5.95

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 229 - 533 7.5e-36 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 865
AccI GTMKAC 2 cut(s) 39, 954
AccII CGCG 1 cut(s) 1378
AciI CCGC 5 cut(s) 4, 626, 884, 1376, 1615
AclWI GGATC 2 cut(s) 581, 739
AcsI RAATTY 2 cut(s) 1194, 1272
AcvI CACGTG 1 cut(s) 569
AfaI GTAC 3 cut(s) 445, 704, 746
AfiI CCNNNNNNNGG 2 cut(s) 1229, 1493
AflII CTTAAG 1 cut(s) 791
AflIII ACRYGT 1 cut(s) 1340
AgsI TTSAA 4 cut(s) 283, 453, 714, 1000
AjnI CCWGG 4 cut(s) 519, 1228, 1486, 1510
AloI GAACNNNNNNTCC 2 cut(s) 723, 755
AluBI AGCT 9 cut(s) 26, 78, 358, 554, 657, 812, 944, 1409, 1599
AluI AGCT 9 cut(s) 26, 78, 358, 554, 657, 812, 944, 1409, 1599
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 4 cut(s) 38, 132, 1054, 1069
AlwI GGATC 2 cut(s) 581, 739
AoxI GGCC 1 cut(s) 837
ApeKI GCWGC 3 cut(s) 358, 551, 1409
ApoI RAATTY 2 cut(s) 1194, 1272
AspS9I GGNCC 3 cut(s) 478, 816, 837
AsuC2I CCSGG 2 cut(s) 489, 858
AsuHPI GGTGA 2 cut(s) 53, 1244
AsuNHI GCTAGC 1 cut(s) 1202
AvaII GGWCC 2 cut(s) 478, 816
BanII GRGCYC 2 cut(s) 659, 1220
BbrPI CACGTG 1 cut(s) 569
BbsI GAAGAC 4 cut(s) 282, 290, 1317, 1557
Bbv12I GWGCWC 1 cut(s) 659
BbvCI CCTCAGC 1 cut(s) 1413
BbvI GCAGC 3 cut(s) 345, 563, 1396
BccI CCATC 6 cut(s) 209, 566, 605, 662, 762, 1262
BciT130I CCWGG 4 cut(s) 521, 1230, 1488, 1512
BciVI GTATCC 1 cut(s) 705
BcnI CCSGG 2 cut(s) 489, 858
BcoDI GTCTC 4 cut(s) 38, 132, 1054, 1069
BfaI CTAG 3 cut(s) 803, 813, 1203
BfrI CTTAAG 1 cut(s) 791
BfuAI ACCTGC 1 cut(s) 865
BfuI GTATCC 1 cut(s) 705
BisI GCNGC 3 cut(s) 359, 552, 1410
BlsI GCNGC 3 cut(s) 360, 553, 1411
Bme1390I CCNGG 6 cut(s) 489, 521, 858, 1230, 1488, 1512
Bme18I GGWCC 2 cut(s) 478, 816
BmgT120I GGNCC 3 cut(s) 478, 816, 837
BmiI GGNNCC 2 cut(s) 741, 1509
BmrFI CCNGG 6 cut(s) 489, 521, 858, 1230, 1488, 1512
BmrI ACTGGG 2 cut(s) 510, 879
BmsI GCATC 5 cut(s) 286, 630, 834, 1426, 1520
BmtI GCTAGC 1 cut(s) 1206
BmuI ACTGGG 2 cut(s) 510, 879
BpiI GAAGAC 4 cut(s) 282, 290, 1317, 1557
Bpu10I CCTNAGC 1 cut(s) 1413
BpuEI CTTGAG 1 cut(s) 673
BpuMI CCSGG 2 cut(s) 489, 858
BsaAI YACGTR 2 cut(s) 539, 569
BsaBI GATNNNNATC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 8 cut(s) 210, 430, 520, 819, 840, 856, 1284, 1486
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 1229, 1493
Bse1I ACTGG 5 cut(s) 505, 780, 874, 1123, 1474
Bse3DI GCAATG 2 cut(s) 255, 1368
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 4 cut(s) 521, 1230, 1488, 1512
BseDI CCNNGG 8 cut(s) 210, 430, 520, 819, 840, 856, 1284, 1486
BseGI GGATG 4 cut(s) 301, 421, 773, 1280
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 1229, 1493
BseMI GCAATG 2 cut(s) 255, 1368
BseMII CTCAG 4 cut(s) 275, 672, 704, 1404
BseNI ACTGG 5 cut(s) 505, 780, 874, 1123, 1474
BseRI GAGGAG 4 cut(s) 78, 105, 255, 1113
BseXI GCAGC 3 cut(s) 345, 563, 1396
BsgI GTGCAG 1 cut(s) 1413
Bsh1236I CGCG 1 cut(s) 1378
BshFI GGCC 1 cut(s) 839
BsiHKAI GWGCWC 1 cut(s) 659
BsiSI CCGG 2 cut(s) 489, 858
BslFI GGGAC 4 cut(s) 84, 786, 959, 1469
BslI CCNNNNNNNGG 2 cut(s) 1229, 1493
BsmAI GTCTC 4 cut(s) 38, 132, 1054, 1069
BsmFI GGGAC 4 cut(s) 84, 786, 959, 1469
BsnI GGCC 1 cut(s) 839
Bso31I GGTCTC 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 659, 1220
Bsp143I GATC 2 cut(s) 586, 731
Bsp19I CCATGG 2 cut(s) 430, 1284
BspACI CCGC 5 cut(s) 4, 626, 884, 1376, 1615
BspANI GGCC 1 cut(s) 839
BspCNI CTCAG 4 cut(s) 274, 671, 703, 1405
BspFNI CGCG 1 cut(s) 1378
BspHI TCATGA 1 cut(s) 1212
BspLI GGNNCC 2 cut(s) 741, 1509
BspMI ACCTGC 1 cut(s) 865
BspOI GCTAGC 1 cut(s) 1206
BspPI GGATC 2 cut(s) 581, 739
BspQI GCTCTTC 1 cut(s) 487
BspTI CTTAAG 1 cut(s) 791
BspTNI GGTCTC 1 cut(s) 38
BsrDI GCAATG 2 cut(s) 255, 1368
BsrI ACTGG 5 cut(s) 505, 780, 874, 1123, 1474
BssECI CCNNGG 8 cut(s) 210, 430, 520, 819, 840, 856, 1284, 1486
BssMI GATC 2 cut(s) 586, 731
BssT1I CCWWGG 5 cut(s) 210, 430, 819, 840, 1284
Bst2UI CCWGG 4 cut(s) 521, 1230, 1488, 1512
Bst4CI ACNGT 2 cut(s) 512, 1325
Bst6I CTCTTC 4 cut(s) 145, 186, 487, 1376
BstAFI CTTAAG 1 cut(s) 791
BstAPI GCANNNNNTGC 1 cut(s) 1436
BstBAI YACGTR 2 cut(s) 539, 569
BstC8I GCNNGC 2 cut(s) 920, 1204
BstDEI CTNAG 4 cut(s) 261, 658, 690, 1413
BstDSI CCRYGG 2 cut(s) 430, 1284
BstEII GGTNACC 1 cut(s) 860
BstF5I GGATG 4 cut(s) 301, 421, 773, 1280
BstFNI CGCG 1 cut(s) 1378
BstKTI GATC 2 cut(s) 589, 734
BstMAI GTCTC 4 cut(s) 38, 132, 1054, 1069
BstMBI GATC 2 cut(s) 586, 731
BstMWI GCNNNNNNNGC 8 cut(s) 503, 623, 716, 1295, 1358, 1406, 1415, 1436
BstNI CCWGG 4 cut(s) 521, 1230, 1488, 1512
BstNSI RCATGY 1 cut(s) 1344
BstPI GGTNACC 1 cut(s) 860
BstSCI CCNGG 6 cut(s) 487, 519, 856, 1228, 1486, 1510
BstUI CGCG 1 cut(s) 1378
BstV1I GCAGC 3 cut(s) 345, 563, 1396
BstV2I GAAGAC 4 cut(s) 282, 290, 1317, 1557
BstX2I RGATCY 1 cut(s) 731
BstYI RGATCY 1 cut(s) 731
BsuI GTATCC 1 cut(s) 705
BsuRI GGCC 1 cut(s) 839
BtgI CCRYGG 2 cut(s) 430, 1284
BtsCI GGATG 4 cut(s) 301, 421, 773, 1280
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 2 cut(s) 920, 1204
CciI TCATGA 1 cut(s) 1212
Cfr13I GGNCC 3 cut(s) 478, 816, 837
CseI GACGC 1 cut(s) 1322
Csp6I GTAC 3 cut(s) 444, 703, 745
CviQI GTAC 3 cut(s) 444, 703, 745
DdeI CTNAG 4 cut(s) 261, 658, 690, 1413
DpnI GATC 2 cut(s) 588, 733
DpnII GATC 2 cut(s) 586, 731
Eam1104I CTCTTC 4 cut(s) 145, 186, 487, 1376
EarI CTCTTC 4 cut(s) 145, 186, 487, 1376
Ecl136II GAGCTC 1 cut(s) 657
Eco130I CCWWGG 5 cut(s) 210, 430, 819, 840, 1284
Eco24I GRGCYC 2 cut(s) 659, 1220
Eco31I GGTCTC 1 cut(s) 38
Eco32I GATATC 1 cut(s) 1039
Eco47I GGWCC 2 cut(s) 478, 816
Eco53kI GAGCTC 1 cut(s) 657
Eco72I CACGTG 1 cut(s) 569
Eco91I GGTNACC 1 cut(s) 860
EcoICRI GAGCTC 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 837
EcoO65I GGTNACC 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 1272
EcoRII CCWGG 4 cut(s) 519, 1228, 1486, 1510
EcoRV GATATC 1 cut(s) 1039
EcoT14I CCWWGG 5 cut(s) 210, 430, 819, 840, 1284
EcoT38I GRGCYC 2 cut(s) 659, 1220
ErhI CCWWGG 5 cut(s) 210, 430, 819, 840, 1284
FaqI GGGAC 4 cut(s) 84, 786, 959, 1469
FauI CCCGC 1 cut(s) 1383
FauNDI CATATG 1 cut(s) 1243
FblI GTMKAC 2 cut(s) 39, 954
Fnu4HI GCNGC 3 cut(s) 359, 552, 1410
FokI GGATG 4 cut(s) 308, 428, 780, 1267
FriOI GRGCYC 2 cut(s) 659, 1220
Fsp4HI GCNGC 3 cut(s) 359, 552, 1410
FspBI CTAG 3 cut(s) 803, 813, 1203
GluI GCNGC 3 cut(s) 359, 552, 1410
HaeIII GGCC 1 cut(s) 839
HapII CCGG 2 cut(s) 489, 858
HgaI GACGC 1 cut(s) 1322
HincII GTYRAC 3 cut(s) 40, 56, 253
HindII GTYRAC 3 cut(s) 40, 56, 253
HindIII AAGCTT 1 cut(s) 76
HpaII CCGG 2 cut(s) 489, 858
HphI GGTGA 2 cut(s) 53, 1244
Hpy166II GTNNAC 7 cut(s) 40, 56, 253, 536, 631, 955, 970
Hpy188I TCNGA 9 cut(s) 151, 166, 219, 264, 424, 661, 787, 1132, 1581
Hpy188III TCNNGA 7 cut(s) 13, 194, 604, 652, 752, 1000, 1213
Hpy8I GTNNAC 7 cut(s) 40, 56, 253, 536, 631, 955, 970
Hpy99I CGWCG 2 cut(s) 41, 54
HpyAV CCTTC 5 cut(s) 731, 1325, 1349, 1397, 1466
HpyCH4III ACNGT 2 cut(s) 512, 1325
HpyCH4IV ACGT 4 cut(s) 538, 568, 972, 1294
HpyCH4V TGCA 9 cut(s) 327, 551, 617, 643, 918, 1298, 1430, 1449, 1533
HpyF10VI GCNNNNNNNGC 8 cut(s) 503, 623, 716, 1295, 1358, 1406, 1415, 1436
HpyF3I CTNAG 4 cut(s) 261, 658, 690, 1413
HpySE526I ACGT 4 cut(s) 538, 568, 972, 1294
Kzo9I GATC 2 cut(s) 586, 731
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 1 cut(s) 1358
Lsp1109I GCAGC 3 cut(s) 345, 563, 1396
LweI GCATC 5 cut(s) 286, 630, 834, 1426, 1520
MaeI CTAG 3 cut(s) 803, 813, 1203
MaeII ACGT 4 cut(s) 538, 568, 972, 1294
MaeIII GTNAC 9 cut(s) 187, 267, 395, 860, 899, 1103, 1114, 1336, 1343
MalI GATC 2 cut(s) 588, 733
MboI GATC 2 cut(s) 586, 731
MfeI CAATTG 2 cut(s) 453, 714
MflI RGATCY 1 cut(s) 731
MhlI GDGCHC 2 cut(s) 659, 1220
MluCI AATT 8 cut(s) 246, 453, 546, 714, 910, 1194, 1272, 1380
MlyI GAGTC 4 cut(s) 191, 428, 1232, 1241
MseI TTAA 4 cut(s) 18, 792, 909, 1383
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 3 cut(s) 358, 554, 626
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 2 cut(s) 489, 858
MspR9I CCNGG 6 cut(s) 489, 521, 858, 1230, 1488, 1512
MunI CAATTG 2 cut(s) 453, 714
MvaI CCWGG 4 cut(s) 521, 1230, 1488, 1512
MvnI CGCG 1 cut(s) 1378
MwoI GCNNNNNNNGC 8 cut(s) 503, 623, 716, 1295, 1358, 1406, 1415, 1436
NciI CCSGG 2 cut(s) 489, 858
NcoI CCATGG 2 cut(s) 430, 1284
NdeI CATATG 1 cut(s) 1243
NdeII GATC 2 cut(s) 586, 731
NheI GCTAGC 1 cut(s) 1202
NlaIV GGNNCC 2 cut(s) 741, 1509
NmeAIII GCCGAG 1 cut(s) 686
NmuCI GTSAC 2 cut(s) 395, 899
NspI RCATGY 1 cut(s) 1344
PagI TCATGA 1 cut(s) 1212
PciI ACATGT 1 cut(s) 1340
PciSI GCTCTTC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 1049
PfoI TCCNGGA 2 cut(s) 487, 1510
PkrI GCNGC 3 cut(s) 360, 553, 1411
PleI GAGTC 4 cut(s) 191, 427, 1232, 1241
PmaCI CACGTG 1 cut(s) 569
PmlI CACGTG 1 cut(s) 569
PpsI GAGTC 4 cut(s) 191, 427, 1232, 1241
Ppu21I YACGTR 2 cut(s) 539, 569
PscI ACATGT 1 cut(s) 1340
Psp124BI GAGCTC 1 cut(s) 659
Psp6I CCWGG 4 cut(s) 519, 1228, 1486, 1510
PspCI CACGTG 1 cut(s) 569
PspEI GGTNACC 1 cut(s) 860
PspGI CCWGG 4 cut(s) 519, 1228, 1486, 1510
PspN4I GGNNCC 2 cut(s) 741, 1509
PspPI GGNCC 3 cut(s) 478, 816, 837
PsuI RGATCY 1 cut(s) 731
PvuII CAGCTG 2 cut(s) 358, 554
RsaI GTAC 3 cut(s) 445, 704, 746
RsaNI GTAC 3 cut(s) 444, 703, 745
RseI CAYNNNNRTG 1 cut(s) 638
SacI GAGCTC 1 cut(s) 659
SalI GTCGAC 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 4 cut(s) 18, 792, 909, 1383
SatI GCNGC 3 cut(s) 359, 552, 1410
Sau3AI GATC 2 cut(s) 586, 731
Sau96I GGNCC 3 cut(s) 478, 816, 837
SchI GAGTC 4 cut(s) 191, 428, 1232, 1241
ScrFI CCNGG 6 cut(s) 489, 521, 858, 1230, 1488, 1512
SduI GDGCHC 2 cut(s) 659, 1220
SfaNI GCATC 5 cut(s) 286, 630, 834, 1426, 1520
SinI GGWCC 2 cut(s) 478, 816
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 2 cut(s) 652, 791
SmoI CTYRAG 2 cut(s) 652, 791
Sse9I AATT 8 cut(s) 246, 453, 546, 714, 910, 1194, 1272, 1380
SsiI CCGC 5 cut(s) 4, 626, 884, 1376, 1615
SspMI CTAG 3 cut(s) 803, 813, 1203
SstI GAGCTC 1 cut(s) 659
StyD4I CCNGG 6 cut(s) 487, 519, 856, 1228, 1486, 1510
StyI CCWWGG 5 cut(s) 210, 430, 819, 840, 1284
TaaI ACNGT 2 cut(s) 512, 1325
TaiI ACGT 4 cut(s) 541, 571, 975, 1297
TaqI TCGA 4 cut(s) 39, 238, 561, 1404
TaqII GACCGA 2 cut(s) 474, 1002
TasI AATT 8 cut(s) 246, 453, 546, 714, 910, 1194, 1272, 1380
TatI WGTACW 1 cut(s) 702
Tru1I TTAA 4 cut(s) 18, 792, 909, 1383
Tru9I TTAA 4 cut(s) 18, 792, 909, 1383
TseFI GTSAC 2 cut(s) 395, 899
TseI GCWGC 3 cut(s) 358, 551, 1409
Tsp45I GTSAC 2 cut(s) 395, 899
TspDTI ATGAA 4 cut(s) 713, 771, 963, 1591
TspGWI ACGGA 2 cut(s) 365, 732
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 2 cut(s) 478, 816
XapI RAATTY 2 cut(s) 1194, 1272
XceI RCATGY 1 cut(s) 1344
XmiI GTMKAC 2 cut(s) 39, 954
XspI CTAG 3 cut(s) 803, 813, 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.